##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545861_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2857386 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.402505996739677 31.0 31.0 33.0 30.0 34.0 2 31.79388679023415 31.0 31.0 34.0 30.0 34.0 3 31.837156058019463 31.0 31.0 34.0 30.0 34.0 4 35.63300968087616 37.0 35.0 37.0 33.0 37.0 5 35.574286078254744 37.0 35.0 37.0 33.0 37.0 6 35.624731485350594 37.0 35.0 37.0 33.0 37.0 7 35.96064759888934 37.0 35.0 37.0 35.0 37.0 8 35.95591705145892 37.0 35.0 37.0 35.0 37.0 9 37.74470407568316 39.0 38.0 39.0 35.0 39.0 10 36.99861306802791 39.0 37.0 39.0 33.0 39.0 11 36.81607070238323 39.0 35.0 39.0 32.0 39.0 12 36.32704191873272 38.0 35.0 39.0 32.0 39.0 13 36.04024552510581 38.0 35.0 39.0 32.0 39.0 14 36.99550988210903 39.0 35.0 41.0 31.0 41.0 15 37.1791557038496 39.0 35.0 41.0 32.0 41.0 16 37.334653420993874 39.0 35.0 41.0 32.0 41.0 17 37.28455518435381 39.0 35.0 41.0 32.0 41.0 18 37.15225174337664 39.0 35.0 40.0 32.0 41.0 19 36.974375180672126 38.0 35.0 40.0 32.0 41.0 20 36.74151129738859 38.0 35.0 40.0 32.0 41.0 21 36.58200817110464 38.0 35.0 40.0 31.0 41.0 22 36.52322472357602 38.0 35.0 40.0 31.0 41.0 23 36.464498671163085 38.0 35.0 40.0 31.0 41.0 24 36.50969242517462 38.0 35.0 40.0 31.0 41.0 25 36.490862627590396 38.0 35.0 40.0 31.0 41.0 26 36.25935417895937 38.0 35.0 40.0 31.0 41.0 27 36.242852733232404 38.0 35.0 40.0 31.0 41.0 28 36.22897151452411 38.0 35.0 40.0 31.0 41.0 29 36.192512667172025 38.0 35.0 40.0 31.0 41.0 30 36.039352751080884 38.0 35.0 40.0 30.0 41.0 31 35.83410466769278 38.0 35.0 40.0 30.0 41.0 32 35.569932098778395 38.0 35.0 40.0 29.0 41.0 33 35.22330759652353 38.0 34.0 40.0 27.0 41.0 34 34.878352802176536 38.0 34.0 40.0 24.0 41.0 35 34.596025878197764 37.0 34.0 40.0 23.0 41.0 36 34.396567702088554 37.0 34.0 40.0 22.0 41.0 37 34.28768496800922 37.0 33.0 40.0 21.0 41.0 38 34.19063787671669 37.0 33.0 40.0 21.0 41.0 39 34.07531534066451 37.0 33.0 40.0 21.0 41.0 40 33.954246993580846 37.0 33.0 40.0 19.0 41.0 41 33.89345786673554 37.0 33.0 40.0 18.0 41.0 42 33.87244810466629 37.0 33.0 40.0 18.0 41.0 43 33.77739864337545 37.0 33.0 40.0 18.0 41.0 44 33.665695849283225 36.0 33.0 40.0 18.0 41.0 45 33.56720128117097 36.0 33.0 40.0 18.0 41.0 46 33.52275611345475 36.0 33.0 40.0 18.0 41.0 47 33.463359168134794 36.0 33.0 40.0 18.0 41.0 48 33.355669482527034 36.0 33.0 40.0 18.0 41.0 49 33.30595481324539 36.0 33.0 40.0 18.0 41.0 50 33.138988922042735 35.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 0.0 13 6.0 14 19.0 15 65.0 16 194.0 17 543.0 18 1379.0 19 2686.0 20 4664.0 21 7768.0 22 11926.0 23 17720.0 24 26913.0 25 41800.0 26 62141.0 27 76835.0 28 77990.0 29 75545.0 30 78994.0 31 89193.0 32 105816.0 33 134271.0 34 223346.0 35 351273.0 36 186841.0 37 238066.0 38 377484.0 39 663906.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.175692048606663 21.535907294289256 29.658401070068933 18.629999587035144 2 34.09626840755852 23.815368312156636 29.666975340398533 12.421387939886316 3 26.82826191491104 23.73372026040584 36.9212280034969 12.516789821186217 4 23.56912926709937 25.520388214962907 37.279912479447994 13.630570038489726 5 21.629454333436225 30.798184074535257 35.27892276367281 12.293438828355708 6 19.202340880791045 38.03840293191049 31.981713356193385 10.777542831105073 7 83.23999627631689 3.306028656961293 12.024241737028179 1.4297333296936432 8 84.95761510695439 1.804271456499052 11.64676386039548 1.5913495761510694 9 80.12480637897715 3.5623468442835518 13.77451278896166 2.5383339877776403 10 40.53628036254115 22.31711081386974 24.616835107332367 12.529773716256745 11 37.10849706689961 18.773942337507076 27.411592273497526 16.705968322095792 12 34.342052491332986 20.871908800561073 28.249036007035798 16.53700270107014 13 23.146155262187186 30.87066290658665 29.718980914724156 16.264200916502006 14 17.569904801101426 33.265544102196905 32.705941724359256 16.458609372342416 15 16.56867500575701 22.606606177814268 45.01708904572221 15.807629770706514 16 18.58807315497451 19.514969276114602 42.93378633478291 18.963171234127977 17 19.18960196487279 19.391324798259667 33.745213282349674 27.67385995451787 18 21.702493117835672 21.45719899236575 36.96714409603743 19.87316379376115 19 24.861674271519494 22.85795478804754 31.928132915888856 20.35223802454411 20 25.830496824720218 23.260875499494993 31.512543282566654 19.39608439321814 21 21.062327595921587 24.514503815725284 34.75519233313245 19.667976255220683 22 20.539507087946816 21.608141147188377 33.96485459087432 23.887497173990493 23 18.356567856075447 25.302601748591197 33.3030609095166 23.037769485816757 24 18.359752585055013 23.63985824806309 39.93111186238051 18.069277304501387 25 17.96708600098132 23.824222558660257 37.57007278680584 20.63861865355258 26 18.079111467614105 28.647092132459527 32.92901274101574 20.344783658910625 27 17.992738817926597 28.03971881992842 34.43437463471859 19.533167727426395 28 15.913915725771737 25.55930490315274 39.37724899611043 19.14953037496509 29 17.042814656472736 22.935963149535972 38.39047297075019 21.630749223241104 30 18.826577858224265 25.8532098918382 36.068245592300094 19.251966657637436 31 24.05898258058239 24.599931545825452 31.441814301602932 19.899271571989225 32 25.065041964928785 24.25734569988094 31.88788634087239 18.789725994317884 33 23.820757853506667 25.136785859523354 31.181086489539737 19.86136979743024 34 18.706958037870976 26.319335224572388 32.653096221511554 22.320610516045083 35 19.476332564098794 25.830986783024763 32.72728990762886 21.96539074524758 36 24.918019476542547 24.578548365534093 30.76882157328411 19.73461058463925 37 19.69495895899259 29.22023835771576 31.09208906322072 19.99271362007093 38 20.06515745510057 29.598591159892294 28.918809009353303 21.41744237565383 39 19.982004531414375 28.439874766657358 30.318619885447752 21.259500816480518 40 21.730420741194926 26.16699318887963 29.477501464625362 22.62508460530009 41 18.53032806908132 24.79143524886032 30.19879008296394 26.47944659909442 42 21.304646974542464 25.587582496729528 28.39899824524933 24.708772283478673 43 20.953941819551154 25.995787758461752 29.51820300092462 23.532067421062468 44 19.81863843386928 28.19916525103714 29.999762020252074 21.98243429484151 45 18.438110916760984 31.36762061548562 27.71627634488305 22.477992122870344 46 20.85857493527301 28.63424822547601 29.723495530530354 20.783681308720627 47 20.513049339501208 27.094659244498292 30.127676134760932 22.264615281239568 48 21.13085176451484 25.160233864098164 31.414026666330695 22.294887705056297 49 20.37152138353026 23.90867037215133 33.090384008320896 22.629424235997515 50 19.114253377037613 28.5423110493297 30.474111653098323 21.869323920534363 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 713.0 1 2189.5 2 3666.0 3 34816.0 4 65966.0 5 46923.0 6 27880.0 7 27709.0 8 27538.0 9 28356.5 10 29175.0 11 28355.0 12 27535.0 13 26162.5 14 24790.0 15 22661.0 16 20532.0 17 19145.0 18 17758.0 19 16381.5 20 15005.0 21 14427.5 22 13850.0 23 14644.0 24 15438.0 25 16141.5 26 16845.0 27 19999.0 28 23153.0 29 27606.0 30 32059.0 31 37969.0 32 43879.0 33 50677.5 34 57476.0 35 65920.5 36 74365.0 37 82079.0 38 89793.0 39 107168.5 40 124544.0 41 155085.0 42 185626.0 43 216169.0 44 246712.0 45 262525.0 46 278338.0 47 269158.0 48 259978.0 49 254053.0 50 248128.0 51 229559.5 52 210991.0 53 192972.5 54 174954.0 55 158815.5 56 142677.0 57 125840.5 58 109004.0 59 98525.5 60 88047.0 61 74037.5 62 60028.0 63 50741.0 64 41454.0 65 33235.0 66 25016.0 67 19685.0 68 14354.0 69 10975.0 70 7596.0 71 6227.0 72 4858.0 73 4228.0 74 3598.0 75 2726.5 76 1855.0 77 1461.0 78 1067.0 79 836.5 80 606.0 81 442.0 82 278.0 83 212.5 84 147.0 85 105.5 86 64.0 87 48.5 88 33.0 89 21.5 90 10.0 91 8.0 92 6.0 93 3.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2857386.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.72753567047777 #Duplication Level Percentage of deduplicated Percentage of total 1 79.52193424175645 15.68771794339638 2 8.474307322156129 3.343543999608519 3 2.908499649606388 1.7213259175554634 4 1.414691204861782 1.1163348482648792 5 0.836463993505291 0.8250686634472957 6 0.5403460559814541 0.6395817656265668 7 0.41106836627179894 0.5676556101042354 8 0.3252266255137563 0.5132735884649394 9 0.24728829977713143 0.4390549879270645 >10 2.9842311357933116 13.839259533177767 >50 1.0975400685158219 15.627906502802638 >100 1.2308386259636006 43.092103806453494 >500 0.006483780254709589 0.7981521990269747 >1k 7.204200283010654E-4 0.19754835410389862 >5k 1.8010500707526636E-4 0.21378569184229462 >10k+ 1.8010500707526636E-4 1.3776865881976024 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 38775 1.3570095184899764 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 6017 0.2105770798905013 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07800836148843733 0.0 2 0.0 0.0 0.0 0.281201069788961 0.0 3 0.0 0.0 0.0 0.3883969474197746 0.0 4 0.0 0.0 0.0 0.5465134917018561 0.0 5 0.0 0.0 0.0 0.9150671277874253 0.0 6 0.0 0.0 0.0 1.2453690190964748 0.0 7 0.0 0.0 0.0 1.4771892911913196 0.0 8 0.0 0.0 0.0 2.0330469877013466 0.0 9 0.0 0.0 0.0 2.219511119603722 0.0 10 0.0 0.0 0.0 2.554222635653706 0.0 11 0.0 0.0 0.0 2.893378773466378 0.0 12 3.4997021753448784E-5 0.0 0.0 3.185358925955401 0.0 13 3.4997021753448784E-5 0.0 0.0 3.2952145772394767 0.0 14 3.4997021753448784E-5 0.0 0.0 3.335391158212436 0.0 15 3.4997021753448784E-5 0.0 0.0 3.3997506812170286 0.0 16 3.4997021753448784E-5 0.0 0.0 3.5629767906751137 0.0 17 3.4997021753448784E-5 0.0 0.0 3.7651195883230337 0.0 18 3.4997021753448784E-5 0.0 0.0 4.0350866141291375 0.0 19 3.4997021753448784E-5 0.0 0.0 4.169755153836409 0.0 20 3.4997021753448784E-5 0.0 0.0 4.316602657113879 0.0 21 3.4997021753448784E-5 0.0 0.0 4.522070171828378 0.0 22 3.4997021753448784E-5 0.0 0.0 4.75021575663911 0.0 23 3.4997021753448784E-5 0.0 0.0 4.989420400323932 0.0 24 3.4997021753448784E-5 0.0 0.0 5.1788592790753505 0.0 25 3.4997021753448784E-5 0.0 0.0 5.34649501327437 0.0 26 3.4997021753448784E-5 0.0 0.0 5.510421063167525 0.0 27 3.4997021753448784E-5 0.0 0.0 5.679351687171422 0.0 28 3.4997021753448784E-5 0.0 0.0 5.84331273408633 0.0 29 3.4997021753448784E-5 0.0 0.0 6.037301225665696 0.0 30 3.4997021753448784E-5 0.0 0.0 6.258972361452041 0.0 31 3.4997021753448784E-5 0.0 0.0 6.452365903661598 0.0 32 3.4997021753448784E-5 0.0 0.0 6.634665389975313 0.0 33 3.4997021753448784E-5 0.0 0.0 6.818994703550728 0.0 34 3.4997021753448784E-5 0.0 0.0 7.01648289730544 0.0 35 3.4997021753448784E-5 0.0 0.0 7.239868887157703 0.0 36 3.4997021753448784E-5 0.0 0.0 7.44106676521828 0.0 37 3.4997021753448784E-5 0.0 0.0 7.6359301823414825 0.0 38 3.4997021753448784E-5 0.0 0.0 7.86848539189315 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACTA 25 4.4445063E-5 44.0 12 CGTCTAC 20 7.8584487E-4 44.0 36 CGCGAGT 25 4.4445063E-5 44.0 27 AATACCG 20 7.8584487E-4 44.0 1 CGTTTTT 25965 0.0 43.28827 1 ACCGCTC 165 0.0 41.333332 18 CGTAAGG 655 0.0 40.9771 2 TATAGCG 245 0.0 40.40816 1 ACGGGTA 535 0.0 39.887848 5 ACGGGAT 765 0.0 39.686275 5 GCGATAT 100 0.0 39.600002 9 AGTACGG 400 0.0 39.600002 2 TACGGGT 540 0.0 39.11111 4 TACGATA 45 2.3530447E-8 39.11111 34 ATTAGCG 175 0.0 38.971428 1 CGACGGT 435 0.0 38.942528 28 GCGCGAC 510 0.0 38.823532 9 TAATGCG 125 0.0 38.72 1 CGTATGG 325 0.0 38.584614 2 TAGTCCG 40 4.1274143E-7 38.5 1 >>END_MODULE