##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545859_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2232425 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.503455211261297 31.0 31.0 33.0 30.0 34.0 2 31.89856635721245 31.0 31.0 34.0 30.0 34.0 3 31.9125623481192 31.0 31.0 34.0 30.0 34.0 4 35.69522693931487 37.0 35.0 37.0 33.0 37.0 5 35.65004737001243 37.0 35.0 37.0 33.0 37.0 6 35.706653974937566 37.0 35.0 37.0 33.0 37.0 7 36.02537688836131 37.0 35.0 37.0 35.0 37.0 8 36.02143185101403 37.0 35.0 37.0 35.0 37.0 9 37.808493454427364 39.0 38.0 39.0 35.0 39.0 10 37.31804159154283 39.0 37.0 39.0 34.0 39.0 11 37.05577298229504 39.0 37.0 39.0 33.0 39.0 12 36.492756979517786 38.0 35.0 39.0 33.0 39.0 13 36.23779074325005 38.0 35.0 39.0 32.0 39.0 14 37.30333068300167 39.0 35.0 41.0 32.0 41.0 15 37.46491550667996 39.0 35.0 41.0 33.0 41.0 16 37.58058344625239 39.0 35.0 41.0 33.0 41.0 17 37.49068031400831 39.0 35.0 41.0 33.0 41.0 18 37.33851797932741 39.0 36.0 41.0 33.0 41.0 19 37.189261005408916 38.0 35.0 41.0 32.0 41.0 20 36.978167687604284 38.0 35.0 41.0 32.0 41.0 21 36.847694771380894 38.0 35.0 41.0 32.0 41.0 22 36.74412219895405 38.0 35.0 40.0 32.0 41.0 23 36.66458358063541 38.0 35.0 40.0 32.0 41.0 24 36.70912438267803 38.0 35.0 40.0 32.0 41.0 25 36.688466129881185 38.0 35.0 40.0 32.0 41.0 26 36.44973694525012 38.0 35.0 40.0 31.0 41.0 27 36.423193164384024 38.0 35.0 40.0 31.0 41.0 28 36.41884721771168 38.0 35.0 40.0 31.0 41.0 29 36.39360426442098 38.0 35.0 40.0 31.0 41.0 30 36.25407034950782 38.0 35.0 40.0 31.0 41.0 31 36.026813442780835 38.0 35.0 40.0 30.0 41.0 32 35.73063686350045 38.0 35.0 40.0 30.0 41.0 33 35.37327345823488 38.0 34.0 40.0 27.0 41.0 34 35.02879962372756 38.0 34.0 40.0 25.0 41.0 35 34.71026843007044 38.0 34.0 40.0 23.0 41.0 36 34.52384066653975 38.0 34.0 40.0 22.0 41.0 37 34.429895293234935 38.0 34.0 40.0 22.0 41.0 38 34.36834787282888 37.0 34.0 40.0 22.0 41.0 39 34.26319271644064 37.0 34.0 40.0 21.0 41.0 40 34.14183141650895 37.0 33.0 40.0 21.0 41.0 41 34.0984512357638 37.0 34.0 40.0 20.0 41.0 42 34.06808112254611 37.0 33.0 40.0 20.0 41.0 43 33.9666398647211 37.0 33.0 40.0 19.0 41.0 44 33.842536255417315 37.0 33.0 40.0 18.0 41.0 45 33.73400181417069 37.0 33.0 40.0 18.0 41.0 46 33.67976930915932 36.0 33.0 40.0 18.0 41.0 47 33.60601050427226 36.0 33.0 40.0 18.0 41.0 48 33.48314321869716 36.0 33.0 40.0 18.0 41.0 49 33.4443446028422 36.0 33.0 40.0 18.0 41.0 50 33.27367503947501 36.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 0.0 11 0.0 12 0.0 13 8.0 14 7.0 15 33.0 16 96.0 17 296.0 18 702.0 19 1606.0 20 2906.0 21 4932.0 22 8015.0 23 12464.0 24 19545.0 25 30955.0 26 46804.0 27 57219.0 28 57232.0 29 54586.0 30 57665.0 31 64879.0 32 79235.0 33 101946.0 34 171646.0 35 276662.0 36 149933.0 37 190904.0 38 303239.0 39 538907.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.94424224777988 22.161864340347382 29.663572124483466 17.230321287389273 2 34.74177184003942 24.12345319551609 28.98914857162055 12.145626392823946 3 26.905808705779588 23.785838270042667 36.73812110149277 12.570231922684972 4 23.92411839143532 25.93524978442725 36.75276885001736 13.387862974120072 5 21.747023976169412 31.664535202750372 33.79535706686675 12.793083754213466 6 19.71286829344771 39.09045096699777 31.03244229929337 10.164238440261151 7 84.35306897208193 3.1198808470609314 11.219548249101313 1.307501931755826 8 85.82653392611174 2.205762791583144 10.864597914823566 1.1031053674815503 9 80.68100832054829 5.643190700695432 11.921789085859547 1.7540118928967379 10 37.107360829591144 39.00117585137239 16.193690717493308 7.697772601543165 11 35.12046317345487 20.313649954645733 31.37449186422836 13.19139500767103 12 32.57251643392276 21.62527296549716 31.791124001926157 14.011086598653929 13 21.02435692128515 32.77382218887532 32.20578518875214 13.996035701087383 14 15.280289371423454 35.22465480363282 34.10273581419309 15.392320010750641 15 14.89469970995666 23.980693640323864 46.9097954018612 14.21481124785827 16 17.9098513947837 21.438525370393183 44.097338096464604 16.554285138358512 17 18.371188281801178 20.324445390102692 33.546927668342725 27.757438659753408 18 20.305228619102543 22.94012116868428 37.65362778144842 19.101022430764754 19 24.689698422119445 23.01752578474081 33.46791045611835 18.8248653370214 20 26.890533836523062 23.83439533242998 31.619920042106674 17.655150788940276 21 22.357973952092454 24.9720371345062 34.40917388042152 18.26081503297983 22 22.005756072432444 22.221530398557622 32.904397684132725 22.86831584487721 23 17.68435669731346 27.7119276123498 32.36480508863679 22.238910601699946 24 18.334860073686688 24.00062712073194 40.623044447181876 17.0414683583995 25 17.565562112948925 25.461684043136945 38.13503253188797 18.837721312026158 26 17.887051076743898 30.69066150038635 32.979517788951476 18.442769633918275 27 17.85255943648723 29.935787316483196 34.535404324893335 17.676248922136242 28 15.536423396082736 26.62682956874251 41.03560030012206 16.80114673505269 29 16.615160643694637 23.731233972025937 39.267522985094686 20.386082399184744 30 18.610479635374087 27.96456767864542 35.191283021826045 18.23366966415445 31 25.080170666427765 25.515974780787708 30.991052330985365 18.412802221799165 32 26.249661242818906 25.777797686372445 31.266044771940827 16.706496298867823 33 25.508583715018425 26.08226480172906 29.93511540141326 18.474036081839255 34 20.166276582639956 27.207901721222438 31.536423396082736 21.089398300054874 35 20.017290614466333 26.064257477854795 33.18010683449612 20.73834507318275 36 27.070741458279674 25.211552459769088 29.756609964500484 17.961096117450754 37 20.46774247735086 30.26309954421761 31.03656337838897 18.232594600042553 38 19.58932550925563 31.466141079767517 28.16860588821573 20.775927522761123 39 20.60131919325397 30.564520644590527 30.188337794102825 18.645822368052677 40 22.964713260243904 27.328980816824753 28.52696059218115 21.179345330750195 41 18.8777226558563 26.46749610849189 29.244789858561877 25.409991377089934 42 21.62249571654143 26.841842391121762 27.864900276605038 23.670761615731774 43 21.93023281857173 26.915842637490623 28.479881742947693 22.674042800989955 44 20.55464349306248 28.90587589728658 29.71141247746285 20.82806813218809 45 19.161002049340965 33.21876434818639 26.63802815324143 20.982205449231216 46 21.896950625440944 30.716910982451818 28.476522167598016 18.90961622450922 47 21.554005173746038 27.43809982418222 29.431134304623896 21.576760697447842 48 21.96445569280043 25.932517329809514 31.516534710012657 20.586492267377405 49 20.881507777416935 24.846254633414336 32.67424437551094 21.597993213657794 50 19.707940916268182 31.340896110731602 28.842805469388672 20.108357503611543 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 481.0 1 1474.5 2 2468.0 3 23032.0 4 43596.0 5 32444.5 6 21293.0 7 21407.5 8 21522.0 9 22105.5 10 22689.0 11 22477.5 12 22266.0 13 21009.0 14 19752.0 15 18616.0 16 17480.0 17 16062.0 18 14644.0 19 13785.0 20 12926.0 21 13517.5 22 14109.0 23 13939.5 24 13770.0 25 16915.0 26 20060.0 27 22959.0 28 25858.0 29 31113.5 30 36369.0 31 41574.0 32 46779.0 33 54811.5 34 62844.0 35 70253.0 36 77662.0 37 85661.5 38 93661.0 39 106822.0 40 119983.0 41 143348.5 42 166714.0 43 186909.5 44 207105.0 45 207855.0 46 208605.0 47 195703.0 48 182801.0 49 177760.0 50 172719.0 51 160392.5 52 148066.0 53 133498.5 54 118931.0 55 102538.0 56 86145.0 57 76644.0 58 67143.0 59 62030.5 60 56918.0 61 49177.5 62 41437.0 63 33642.0 64 25847.0 65 20806.5 66 15766.0 67 12723.0 68 9680.0 69 8237.0 70 6794.0 71 4963.5 72 3133.0 73 2708.0 74 2283.0 75 1655.0 76 1027.0 77 765.5 78 504.0 79 392.0 80 280.0 81 230.5 82 181.0 83 130.5 84 80.0 85 56.5 86 33.0 87 22.0 88 11.0 89 7.0 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 2.5 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2232425.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.312843927347455 #Duplication Level Percentage of deduplicated Percentage of total 1 80.76715661359486 15.598434901339864 2 7.505064324338395 2.8988827192130167 3 2.3999741593105655 1.3905097910529562 4 1.21933144975372 0.9419503193919961 5 0.743705948504229 0.7181538455651041 6 0.5309298609914155 0.6152259325017292 7 0.39154992168421365 0.5293359769076637 8 0.3202812435732775 0.49484333359899707 9 0.25284647713361463 0.4394866095415013 >10 3.3215297176856646 15.529889692353315 >50 1.2676152211239229 17.694868884720922 >100 1.2743824327849365 41.31630088726203 >500 0.005163243727828942 0.5654402638287908 >1k 0.0 0.0 >5k 2.3469289671949732E-4 0.2300288047239369 >10k+ 2.3469289671949732E-4 1.0366480379982583 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22871 1.0244913042991366 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 5075 0.22733126532806253 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.479433799567734E-5 0.0 0.0 0.03695532884643381 0.0 2 4.479433799567734E-5 0.0 0.0 0.1297244028354816 0.0 3 4.479433799567734E-5 0.0 0.0 0.1835224027682901 0.0 4 4.479433799567734E-5 0.0 0.0 0.266974254454237 0.0 5 4.479433799567734E-5 0.0 0.0 0.4588284040897231 0.0 6 4.479433799567734E-5 0.0 0.0 0.6133688701748099 0.0 7 4.479433799567734E-5 0.0 0.0 0.7218159624623448 0.0 8 4.479433799567734E-5 0.0 0.0 1.0017805749353281 0.0 9 4.479433799567734E-5 0.0 0.0 1.1075400069431225 0.0 10 4.479433799567734E-5 0.0 0.0 1.3126084862873333 0.0 11 4.479433799567734E-5 0.0 0.0 1.5140486242538944 0.0 12 4.479433799567734E-5 0.0 0.0 1.7100238529849827 0.0 13 4.479433799567734E-5 0.0 0.0 1.7819635598060406 0.0 14 4.479433799567734E-5 0.0 0.0 1.809243311645408 0.0 15 4.479433799567734E-5 0.0 0.0 1.8636236379721602 0.0 16 8.958867599135469E-5 0.0 0.0 1.9809400091828393 0.0 17 8.958867599135469E-5 0.0 0.0 2.141169356193377 0.0 18 8.958867599135469E-5 0.0 0.0 2.36093037840017 0.0 19 8.958867599135469E-5 0.0 0.0 2.4669585764359385 0.0 20 8.958867599135469E-5 0.0 0.0 2.585977132490453 0.0 21 8.958867599135469E-5 0.0 0.0 2.7242572538831094 0.0 22 8.958867599135469E-5 0.0 0.0 2.8882941196232794 0.0 23 8.958867599135469E-5 0.0 0.0 3.0614242359765726 0.0 24 8.958867599135469E-5 0.0 0.0 3.192044525571968 0.0 25 8.958867599135469E-5 0.0 0.0 3.302641746083295 0.0 26 8.958867599135469E-5 0.0 0.0 3.420540443687918 0.0 27 8.958867599135469E-5 0.0 0.0 3.5398725601084022 0.0 28 8.958867599135469E-5 0.0 0.0 3.6751514608553477 0.0 29 8.958867599135469E-5 0.0 0.0 3.8170599236256537 0.0 30 8.958867599135469E-5 0.0 0.0 3.9856658118413835 0.0 31 8.958867599135469E-5 0.0 0.0 4.149075556849614 0.0 32 8.958867599135469E-5 0.0 0.0 4.294701949673561 0.0 33 8.958867599135469E-5 0.0 0.0 4.441000257567444 0.0 34 8.958867599135469E-5 0.0 0.0 4.607456017559381 0.0 35 8.958867599135469E-5 0.0 0.0 4.802714536882538 0.0 36 1.3438301398703204E-4 0.0 0.0 4.981712711513265 0.0 37 1.3438301398703204E-4 0.0 0.0 5.158023225864251 0.0 38 1.3438301398703204E-4 0.0 0.0 5.335184832637155 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGATC 40 8.3182385E-9 44.000004 33 CGAATCG 40 8.3182385E-9 44.000004 2 CGTAACG 20 7.858076E-4 44.000004 35 CGGTCTA 160 0.0 44.000004 31 CTTACGC 20 7.858076E-4 44.000004 11 TACGATT 30 2.5287936E-6 44.0 44 CTACCGT 55 1.8189894E-12 44.0 11 TTACGGC 25 4.4441927E-5 44.0 12 CGTCGCG 25 4.4441927E-5 44.0 41 GCGGATA 25 4.4441927E-5 44.0 5 CGTTTTT 19545 0.0 43.268353 1 CGTTAGG 300 0.0 42.533337 2 TATTGCG 85 0.0 41.411766 1 CGGACGG 195 0.0 40.615383 2 CGTAAGG 365 0.0 40.383564 2 GCGTAAG 235 0.0 39.319153 1 TTTACGG 270 0.0 39.11111 2 GAATACG 45 2.3526809E-8 39.11111 1 ATATACG 90 0.0 39.11111 1 AACACGT 125 0.0 38.72 41 >>END_MODULE