##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545856_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4883449 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.46028718637176 31.0 31.0 33.0 30.0 34.0 2 31.864398706733702 31.0 31.0 34.0 30.0 34.0 3 31.936790370903843 31.0 31.0 34.0 30.0 34.0 4 35.696134023310165 37.0 35.0 37.0 33.0 37.0 5 35.624126104316844 37.0 35.0 37.0 33.0 37.0 6 35.6707431571416 37.0 35.0 37.0 33.0 37.0 7 35.96789236459723 37.0 35.0 37.0 35.0 37.0 8 35.954211459974296 37.0 35.0 37.0 35.0 37.0 9 37.71653804513982 39.0 38.0 39.0 35.0 39.0 10 37.21635978997631 39.0 37.0 39.0 33.0 39.0 11 36.980761138285665 39.0 37.0 39.0 33.0 39.0 12 36.40965985310792 38.0 35.0 39.0 32.0 39.0 13 36.18840946224687 38.0 35.0 39.0 32.0 39.0 14 37.24807036993731 39.0 35.0 41.0 32.0 41.0 15 37.36001440784986 39.0 35.0 41.0 32.0 41.0 16 37.43925594390358 39.0 35.0 41.0 33.0 41.0 17 37.32692304148154 39.0 35.0 41.0 32.0 41.0 18 37.23283339295649 39.0 35.0 41.0 32.0 41.0 19 37.119871222162864 38.0 35.0 41.0 32.0 41.0 20 36.94342441172213 38.0 35.0 41.0 32.0 41.0 21 36.83831386382862 38.0 35.0 41.0 32.0 41.0 22 36.73800217837844 38.0 35.0 41.0 31.0 41.0 23 36.655949514369865 38.0 35.0 40.0 31.0 41.0 24 36.712385242479236 38.0 35.0 41.0 32.0 41.0 25 36.6884028071144 38.0 35.0 41.0 31.0 41.0 26 36.44961460639806 38.0 35.0 41.0 31.0 41.0 27 36.4436653275175 38.0 35.0 41.0 31.0 41.0 28 36.41077750581607 38.0 35.0 41.0 31.0 41.0 29 36.3632141955409 38.0 35.0 40.0 31.0 41.0 30 36.21766296730036 38.0 35.0 40.0 30.0 41.0 31 36.05955340170441 38.0 35.0 40.0 30.0 41.0 32 35.83989758058291 38.0 35.0 40.0 30.0 41.0 33 35.55770358203802 38.0 35.0 40.0 28.0 41.0 34 35.26036393540713 38.0 34.0 40.0 26.0 41.0 35 35.047360789474816 38.0 34.0 40.0 25.0 41.0 36 34.89910163902602 38.0 34.0 40.0 24.0 41.0 37 34.82156545507079 38.0 34.0 40.0 24.0 41.0 38 34.761344901933036 38.0 34.0 40.0 24.0 41.0 39 34.648759104477186 37.0 34.0 40.0 23.0 41.0 40 34.55143342338581 37.0 34.0 40.0 23.0 41.0 41 34.51058790621137 37.0 34.0 40.0 23.0 41.0 42 34.478318295122975 37.0 34.0 40.0 23.0 41.0 43 34.368110530078226 37.0 33.0 40.0 23.0 41.0 44 34.25135861969686 37.0 33.0 40.0 23.0 41.0 45 34.160407326870825 37.0 33.0 40.0 23.0 41.0 46 34.09903615252253 37.0 33.0 40.0 22.0 41.0 47 34.04756228640864 36.0 33.0 40.0 22.0 41.0 48 33.941691210453925 36.0 33.0 40.0 22.0 41.0 49 33.88565806666559 36.0 33.0 40.0 22.0 41.0 50 33.75398760179537 36.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 4.0 11 4.0 12 16.0 13 23.0 14 37.0 15 95.0 16 350.0 17 869.0 18 1891.0 19 3954.0 20 7262.0 21 11557.0 22 17837.0 23 26674.0 24 39021.0 25 59251.0 26 87544.0 27 108963.0 28 116926.0 29 119558.0 30 129858.0 31 147168.0 32 176497.0 33 223661.0 34 381301.0 35 587384.0 36 326898.0 37 415925.0 38 657347.0 39 1235571.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.503615579890358 22.838981220035265 28.563582828447682 17.09382037162669 2 32.25345447449129 24.61559442926505 30.190056249179626 12.940894847064033 3 28.141770293904983 23.92239583130693 34.739504804903255 13.196329069884829 4 24.79446391269777 27.288418492749695 33.78053093213423 14.136586662418301 5 22.50679796185032 31.288808381125715 32.24831466449224 13.956078992531712 6 20.75213645110249 39.511603377039464 28.94485024825692 10.791409923601126 7 84.54772436448093 3.5430287077841913 10.212659126776998 1.6965878009578887 8 85.50168129123495 2.7574568711580687 9.931955877905144 1.8089059597018418 9 79.72496487625857 6.318485152604235 11.315527202188454 2.641022768948749 10 37.689940040328054 36.80355830479647 16.097803007669377 9.408698647206105 11 36.43394248614043 21.238595918581314 27.938839946930948 14.388621648347305 12 34.4542555886219 20.406663405310468 29.42135773302844 15.7177232730392 13 22.679380904766283 29.526590735359378 30.026380945106624 17.76764741476772 14 16.18384875115927 32.54292202089138 33.09542087979213 18.177808348157214 15 17.352121420741774 23.330949089465253 43.2171197037176 16.099809786075376 16 20.64848020323341 21.508343795542864 39.7778905851172 18.065285416106526 17 19.007345013739265 20.985045610182475 33.08389214262297 26.923717233455292 18 21.977336099957224 24.00797059619134 34.27647140371487 19.738221900136562 19 24.69387926442971 25.71934302989547 29.682157016485682 19.904620689189137 20 27.313216540195263 24.213829201451677 30.026053307815847 18.446900950537213 21 22.660910352498817 26.515993102415937 31.21287843898851 19.610218106096735 22 22.35819397315299 23.383514397304037 32.09672098551659 22.161570644026384 23 20.572734557072266 26.435128123586427 31.146327114299748 21.84581020504156 24 21.241790382166375 23.12631912404532 37.0075739502962 18.62431654349211 25 19.196842231791507 24.912495246699617 34.044729452483274 21.845933069025598 26 18.050562215352308 29.06685418440942 31.473964405075183 21.40861919516309 27 18.00559399719338 28.160568483463223 32.61661993398518 21.217217585358217 28 16.06508023325318 27.864200076626172 36.47473332884197 19.595986361278676 29 19.263209260504205 24.057873851042572 35.559130442439354 21.119786446013872 30 19.731935359619808 26.221570041992866 33.90013902059794 20.146355577789386 31 24.898345411204254 25.728291623399773 29.25063822720377 20.122724738192208 32 26.45265671864291 25.370716475179734 29.734927097631203 18.441699708546153 33 24.796286395127705 26.77034202671104 29.061530078434323 19.371841499726937 34 19.409212628206006 27.077604373466375 32.461934178077826 21.05124882024979 35 19.698393491976674 27.22874755116722 31.241812907230116 21.83104604962599 36 23.614580596623412 28.832716385489025 28.53172010191977 19.020982915967792 37 21.133362916250377 30.628762581527937 28.985538704305092 19.252335797916594 38 20.4955350204333 30.984494769987357 26.529897209943222 21.99007299963612 39 21.752802169122685 29.144668040968586 28.18364643513222 20.91888335477651 40 22.40023393302561 26.526907519664896 28.18045197154716 22.892406575762337 41 18.08977630359199 26.22109906338737 29.40296909008367 26.286155542936967 42 21.055979083635357 26.523794965402526 26.843487051876657 25.57673889908546 43 21.119458808723095 26.419503920282573 28.25075064774916 24.21028662324517 44 20.129461779983778 28.3196363881347 29.146900070011995 22.404001761869534 45 19.566150890487442 31.332261276814812 26.638160857213826 22.463426975483923 46 20.436150761480256 30.88366439375122 27.72880396621322 20.9513808785553 47 20.127311660263064 27.059604799804397 29.76871469324242 23.044368846690116 48 21.244698163122006 24.599048746080896 31.559047714023432 22.59720537677367 49 20.324365013333814 24.67424150431386 31.993228556292898 23.00816492605943 50 18.42099712723528 28.37912303374111 30.453722358931156 22.746157480092453 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1299.0 1 4368.5 2 7438.0 3 56761.5 4 106085.0 5 73687.0 6 41289.0 7 39528.0 8 37767.0 9 37076.0 10 36385.0 11 35196.0 12 34007.0 13 31816.5 14 29626.0 15 27995.5 16 26365.0 17 25387.5 18 24410.0 19 22831.5 20 21253.0 21 22210.5 22 23168.0 23 23400.0 24 23632.0 25 33200.5 26 42769.0 27 49087.0 28 55405.0 29 68187.0 30 80969.0 31 94292.0 32 107615.0 33 119874.0 34 132133.0 35 145397.5 36 158662.0 37 169820.0 38 180978.0 39 209831.5 40 238685.0 41 286578.0 42 334471.0 43 363733.5 44 392996.0 45 405038.0 46 417080.0 47 398843.5 48 380607.0 49 367278.0 50 353949.0 51 325053.0 52 296157.0 53 281768.0 54 267379.0 55 248077.5 56 228776.0 57 219427.0 58 210078.0 59 197552.0 60 185026.0 61 167052.5 62 149079.0 63 125375.0 64 101671.0 65 81412.5 66 61154.0 67 47273.0 68 33392.0 69 27792.0 70 22192.0 71 18995.5 72 15799.0 73 12938.0 74 10077.0 75 7913.0 76 5749.0 77 4685.0 78 3621.0 79 2745.5 80 1870.0 81 1618.0 82 1366.0 83 981.5 84 597.0 85 401.0 86 205.0 87 150.0 88 95.0 89 89.5 90 84.0 91 54.5 92 25.0 93 17.5 94 10.0 95 6.0 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 4883449.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.86076096664491 #Duplication Level Percentage of deduplicated Percentage of total 1 78.54199251123369 12.457357690646923 2 9.177578976725316 2.911267728046917 3 3.2610090184107965 1.5516625365326102 4 1.5740415394687068 0.9986198643633173 5 0.886330747241602 0.7028940059693409 6 0.5975105993098251 0.5686183674413928 7 0.42776586519192095 0.47492844962493763 8 0.31282605527527774 0.39693274294877023 9 0.2421340653964277 0.3456387479821236 >10 2.3549353258109704 8.629171079085596 >50 0.966353659542174 11.19413892244684 >100 1.6251933338463562 54.961495468717104 >500 0.029437153538707597 2.7953293036368687 >1k 0.0026283172802417498 0.7193111197413193 >5k 1.3141586401208748E-4 0.2042251623073152 >10k+ 1.3141586401208748E-4 1.0884088105086125 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 52218 1.069285253106974 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 9798 0.20063688593860612 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07576612349181899 0.0 2 0.0 0.0 0.0 0.2349978468086797 0.0 3 0.0 0.0 0.0 0.3245247365130669 0.0 4 0.0 0.0 0.0 0.4495593176052417 0.0 5 0.0 0.0 0.0 0.7439004687056218 0.0 6 0.0 0.0 0.0 0.99218810312138 0.0 7 0.0 0.0 0.0 1.172593386354603 0.0 8 0.0 0.0 0.0 1.6184667844386211 0.0 9 0.0 0.0 0.0 1.8112608527292904 0.0 10 0.0 0.0 0.0 2.1598669301143514 0.0 11 0.0 0.0 0.0 2.469729897865218 0.0 12 0.0 0.0 0.0 2.7801457535442675 0.0 13 0.0 0.0 0.0 2.8993647727251783 0.0 14 0.0 0.0 0.0 2.9425924177768623 0.0 15 0.0 0.0 0.0 3.0132392086003152 0.0 16 0.0 0.0 0.0 3.1581777551070975 0.0 17 0.0 0.0 0.0 3.3519752126007663 0.0 18 0.0 0.0 0.0 3.6120782668151135 0.0 19 0.0 0.0 0.0 3.7406349487831245 0.0 20 0.0 0.0 0.0 3.890467577320865 0.0 21 0.0 0.0 0.0 4.062825269599417 0.0 22 0.0 0.0 0.0 4.252916330241188 0.0 23 0.0 0.0 0.0 4.4440517347473065 0.0 24 0.0 0.0 0.0 4.593802453962353 0.0 25 0.0 0.0 0.0 4.7239154130615475 0.0 26 0.0 0.0 0.0 4.850055770010089 0.0 27 0.0 0.0 0.0 4.97767049476712 0.0 28 0.0 0.0 0.0 5.115155292908762 0.0 29 0.0 0.0 0.0 5.265049353438522 0.0 30 0.0 0.0 0.0 5.448935782886235 0.0 31 0.0 0.0 0.0 5.61836521687848 0.0 32 0.0 0.0 0.0 5.775467297805301 0.0 33 0.0 0.0 0.0 5.935210954388999 0.0 34 0.0 0.0 0.0 6.100524444915878 0.0 35 0.0 0.0 0.0 6.286049060817468 0.0 36 0.0 0.0 0.0 6.463403221780344 0.0 37 0.0 0.0 0.0 6.64004067616965 0.0 38 2.0477330673464594E-5 0.0 0.0 6.823742809641301 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 34305 0.0 43.044453 1 CGATACG 60 3.6379788E-12 40.333332 10 CGACGGT 835 0.0 40.311375 28 TATTACG 110 0.0 40.0 1 CGGTCTA 825 0.0 40.0 31 GACCGAT 1915 0.0 38.7154 9 GTCGAAC 40 4.1282146E-7 38.5 40 TATCGCG 200 0.0 38.5 1 CTAGACG 190 0.0 38.210526 1 CGTATGG 380 0.0 38.210526 2 CTACGGG 800 0.0 37.95 3 CGCGATC 35 7.295068E-6 37.714287 20 CGACTAT 35 7.295068E-6 37.714287 21 TCGACTA 35 7.295068E-6 37.714287 27 ACGGGAG 2810 0.0 37.50178 5 TACGGGA 2665 0.0 37.478424 4 GCGGCTA 1380 0.0 37.304348 24 TTAGCGG 1210 0.0 37.272728 2 TAGGGAC 5150 0.0 37.250484 5 CAATACG 65 1.0913936E-11 37.23077 1 >>END_MODULE