##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545851_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2242237 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.50337676168933 31.0 31.0 33.0 30.0 34.0 2 31.915873299744852 31.0 31.0 34.0 30.0 34.0 3 31.9790704550857 33.0 31.0 34.0 30.0 34.0 4 35.734476328773454 37.0 35.0 37.0 33.0 37.0 5 35.65325119512344 37.0 35.0 37.0 33.0 37.0 6 35.69509199964143 37.0 35.0 37.0 33.0 37.0 7 35.981510875076985 37.0 35.0 37.0 35.0 37.0 8 35.972625998054625 37.0 35.0 37.0 35.0 37.0 9 37.74858589881444 39.0 38.0 39.0 35.0 39.0 10 37.27057844465148 39.0 37.0 39.0 34.0 39.0 11 37.010486848624836 39.0 37.0 39.0 33.0 39.0 12 36.385611333681496 38.0 35.0 39.0 32.0 39.0 13 36.10420040343639 38.0 35.0 39.0 32.0 39.0 14 37.14760482500289 39.0 35.0 41.0 32.0 41.0 15 37.31705301446725 39.0 35.0 41.0 32.0 41.0 16 37.45720055462469 39.0 35.0 41.0 33.0 41.0 17 37.378834173194 39.0 35.0 41.0 32.0 41.0 18 37.263833394953345 39.0 35.0 41.0 32.0 41.0 19 37.13071187390093 38.0 35.0 41.0 32.0 41.0 20 36.93218112090738 38.0 35.0 41.0 32.0 41.0 21 36.79960503729088 38.0 35.0 41.0 32.0 41.0 22 36.700190479418545 38.0 35.0 41.0 32.0 41.0 23 36.62903430814851 38.0 35.0 40.0 31.0 41.0 24 36.66663604248792 38.0 35.0 41.0 32.0 41.0 25 36.63568034957946 38.0 35.0 41.0 32.0 41.0 26 36.403759727450755 38.0 35.0 41.0 31.0 41.0 27 36.378918018032884 38.0 35.0 40.0 31.0 41.0 28 36.363707315506794 38.0 35.0 40.0 31.0 41.0 29 36.34096038911141 38.0 35.0 40.0 31.0 41.0 30 36.235723074768636 38.0 35.0 40.0 31.0 41.0 31 36.05803311603546 38.0 35.0 40.0 30.0 41.0 32 35.82933115455681 38.0 35.0 40.0 30.0 41.0 33 35.56885690495697 38.0 35.0 40.0 29.0 41.0 34 35.31767426904471 38.0 35.0 40.0 27.0 41.0 35 35.06030852224809 38.0 34.0 40.0 25.0 41.0 36 34.8796456396001 38.0 34.0 40.0 24.0 41.0 37 34.7934504693304 38.0 34.0 40.0 24.0 41.0 38 34.72791903799643 37.0 34.0 40.0 24.0 41.0 39 34.64213997003885 37.0 34.0 40.0 23.0 41.0 40 34.49530624996376 37.0 34.0 40.0 23.0 41.0 41 34.473292073942225 37.0 34.0 40.0 23.0 41.0 42 34.42980068565455 37.0 34.0 40.0 23.0 41.0 43 34.32981348537197 37.0 33.0 40.0 23.0 41.0 44 34.19626471242781 37.0 33.0 40.0 23.0 41.0 45 34.109873309556484 36.0 33.0 40.0 23.0 41.0 46 34.050132523903585 36.0 33.0 40.0 23.0 41.0 47 34.01286884481881 36.0 33.0 40.0 23.0 41.0 48 33.90424339621548 36.0 33.0 40.0 22.0 41.0 49 33.83828515897294 36.0 33.0 40.0 22.0 41.0 50 33.69628678859549 36.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 1.0 12 3.0 13 8.0 14 22.0 15 52.0 16 141.0 17 422.0 18 998.0 19 1928.0 20 3431.0 21 5440.0 22 8370.0 23 12430.0 24 18255.0 25 27411.0 26 40139.0 27 50326.0 28 52258.0 29 52791.0 30 56408.0 31 65592.0 32 79282.0 33 102408.0 34 177455.0 35 298426.0 36 145638.0 37 187178.0 38 294211.0 39 561211.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.531222613845014 23.342224751442423 29.58041455921029 17.546138075502277 2 32.75505666885347 25.014394107313365 29.626752212188094 12.603797011645067 3 27.617330371410336 23.912503450794897 35.363612321088276 13.106553856706494 4 25.4055659593522 26.624527202075427 34.08814500875688 13.881761829815492 5 22.74148540051743 31.02245659134159 32.53701548944202 13.69904251869896 6 20.95652689702293 39.09956886805453 29.19990170530591 10.744002529616628 7 84.79353431416928 3.9454794475338693 9.717215441543422 1.5437707967534207 8 86.17719714731315 2.8949660539898328 9.29147989262509 1.6363569060719272 9 81.211040581348 5.60516127420964 10.76634628721228 2.4174518572300787 10 40.52011451064272 35.288151966094574 15.099563516256309 9.092170007006397 11 39.40511194846932 20.418938765170676 27.020426475881003 13.155522810479 12 36.67007546481483 20.340534921152404 27.897497008567782 15.091892605464988 13 21.59414905739224 33.91769023524275 28.30686497457673 16.181295732788282 14 15.531007649949583 36.23332413121361 31.350611019263354 16.88505719957346 15 14.91929711266026 24.162700017883925 44.992567690212944 15.925435179242871 16 17.530127279141322 20.172622251795865 43.58566913310234 18.711581335960474 17 17.51532063738133 20.470271429826553 32.456337131177484 29.55807080161464 18 20.51553872315906 23.282819791128233 35.52149036877012 20.68015111694259 19 26.556603962917393 23.35975189063422 29.964495278599006 20.119148867849386 20 28.222707947464965 22.489148114137798 29.33534679875499 19.952797139642243 21 22.122103952436785 26.02423383433598 31.19460610096078 20.659056112266455 22 22.205547406451682 23.557902219970504 29.72183582734564 24.514714546232177 23 19.443216751842023 27.84598595063769 29.920878123053008 22.789919174467286 24 18.67741902394796 23.28768100785064 39.70650738525856 18.328392582942836 25 17.360965856865267 25.695901013140006 36.008459409063356 20.934673720931375 26 17.79191940905444 31.390125129502366 30.426132473953466 20.391822987489725 27 18.408223573154846 30.777924010708947 31.445783831057998 19.368068585078206 28 15.823438824709433 27.331856534344944 38.36400880014021 18.48069584080541 29 17.008728336924243 23.523829104595098 37.974397889250774 21.49304466922988 30 18.565923227562475 27.407941265798396 34.16342697047636 19.86270853616277 31 25.41417343483316 25.62601544796558 29.280535465251887 19.67927565194937 32 26.491891802695257 25.765875774951535 29.719070731595277 18.023161690757934 33 25.075404607095503 26.744541277304762 28.458900642527972 19.72115347307176 34 20.60932898707853 25.978743549410698 30.95631728492572 22.455610178585047 35 20.61508217017202 25.10858575609982 32.367631075573186 21.908700998154966 36 26.04541803564922 25.94761392305987 28.79753567530997 19.209432365980938 37 20.124143879527452 30.351742478605072 30.111223746642303 19.41288989522517 38 19.79010247355654 30.711918499248743 28.21258412915316 21.285394898041552 39 21.148032076894637 30.038573085717523 29.12934716535317 19.68404767203467 40 22.839378709743883 26.831195810255558 28.39280593443066 21.936619545569894 41 18.27554357545612 25.570891926232598 28.766093860729264 27.387470637582023 42 21.619168714101143 26.43770484565191 26.43155027769143 25.51157616255552 43 22.16407097019628 26.682371221240214 27.633742552638278 23.519815255925224 44 19.8991899607401 29.734501749815028 29.0738222587532 21.29248603069167 45 18.231525035043127 33.29179743265319 26.139832676028448 22.336844856275228 46 20.039094886044605 31.708467927342205 28.180161151564263 20.072276035048926 47 21.495631371706022 27.34470085008855 29.170957396564233 21.98871038164119 48 22.062163812299946 24.658276533658128 31.537165785775546 21.74239386826638 49 20.23265158856981 25.58721491082343 32.53032574165889 21.649807758947873 50 18.724604044978296 30.5477074903322 29.77120616598513 20.956482298704373 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 456.0 1 1830.5 2 3205.0 3 21601.0 4 39997.0 5 28973.5 6 17950.0 7 17845.0 8 17740.0 9 17837.5 10 17935.0 11 17395.0 12 16855.0 13 15751.0 14 14647.0 15 13763.5 16 12880.0 17 11662.0 18 10444.0 19 9857.5 20 9271.0 21 10206.5 22 11142.0 23 11884.0 24 12626.0 25 14544.5 26 16463.0 27 21877.0 28 27291.0 29 32458.5 30 37626.0 31 43312.5 32 48999.0 33 57197.0 34 65395.0 35 67388.5 36 69382.0 37 73537.0 38 77692.0 39 95353.0 40 113014.0 41 137316.5 42 161619.0 43 187585.5 44 213552.0 45 215164.0 46 216776.0 47 195328.0 48 173880.0 49 167840.5 50 161801.0 51 149781.5 52 137762.0 53 123644.0 54 109526.0 55 103334.5 56 97143.0 57 89037.0 58 80931.0 59 76757.0 60 72583.0 61 65329.0 62 58075.0 63 50780.0 64 43485.0 65 34652.0 66 25819.0 67 21049.0 68 16279.0 69 14176.0 70 12073.0 71 10666.5 72 9260.0 73 6704.5 74 4149.0 75 3368.5 76 2588.0 77 2387.5 78 2187.0 79 1547.0 80 907.0 81 644.0 82 381.0 83 298.0 84 215.0 85 149.0 86 83.0 87 75.0 88 67.0 89 51.0 90 35.0 91 26.0 92 17.0 93 22.5 94 28.0 95 17.0 96 6.0 97 3.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2242237.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.22740260842594 #Duplication Level Percentage of deduplicated Percentage of total 1 80.63684343941887 13.891633670034789 2 7.194560054870304 2.478871653114995 3 2.3649458754389494 1.2222562422996939 4 1.1606094698045581 0.7997714642989956 5 0.7372419091507457 0.6350381594372239 6 0.4997220536634399 0.5165347806461708 7 0.3940031551047826 0.4751355687386128 8 0.30951696217544505 0.42657386572266687 9 0.2608065776875025 0.4043717925073491 >10 3.4122813414221733 14.376922271152786 >50 1.434948247151298 17.86765839060077 >100 1.589542130650605 45.09910991452963 >500 0.003930618522144088 0.43264953942278733 >1k 5.240824696192117E-4 0.13208812107168988 >5k 2.6204123480960586E-4 0.2543350902658581 >10k+ 2.6204123480960586E-4 0.9870494761560147 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21865 0.9751422351874489 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 5634 0.25126692673432827 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01841910556288207 0.0 2 0.0 0.0 0.0 0.09811630081922651 0.0 3 0.0 0.0 0.0 0.16184729803316955 0.0 4 0.0 0.0 0.0 0.2518467048755328 0.0 5 0.0 0.0 0.0 0.44928346111494905 0.0 6 0.0 0.0 0.0 0.6410562308979827 0.0 7 0.0 0.0 0.0 0.7655747363012919 0.0 8 0.0 0.0 0.0 1.0737045191922174 0.0 9 0.0 0.0 0.0 1.2189612427232268 0.0 10 0.0 0.0 0.0 1.4627356519404506 0.0 11 0.0 0.0 0.0 1.669894841624681 0.0 12 0.0 0.0 0.0 1.8683573591908438 0.0 13 0.0 0.0 0.0 1.9483221443585135 0.0 14 0.0 0.0 0.0 1.9779354278784982 0.0 15 0.0 0.0 0.0 2.021374190150283 0.0 16 0.0 0.0 0.0 2.123504339639387 0.0 17 0.0 0.0 0.0 2.255559960878355 0.0 18 0.0 0.0 0.0 2.4404199912854887 0.0 19 0.0 0.0 0.0 2.527921892288817 0.0 20 0.0 0.0 0.0 2.6237190805432253 0.0 21 0.0 0.0 0.0 2.7433763692241273 0.0 22 0.0 0.0 0.0 2.870258585510809 0.0 23 0.0 0.0 0.0 3.007576808339172 0.0 24 0.0 0.0 0.0 3.1050687326986397 0.0 25 0.0 0.0 0.0 3.1866390573342604 0.0 26 0.0 0.0 0.0 3.2735611801963844 0.0 27 0.0 0.0 0.0 3.3628916122604346 0.0 28 4.459831855419387E-5 0.0 0.0 3.457083261046892 0.0 29 4.459831855419387E-5 0.0 0.0 3.563093464250211 0.0 30 4.459831855419387E-5 0.0 0.0 3.688013354520508 0.0 31 4.459831855419387E-5 0.0 0.0 3.8107925255002035 0.0 32 4.459831855419387E-5 0.0 0.0 3.920548987462075 0.0 33 4.459831855419387E-5 0.0 0.0 4.019066673148289 0.0 34 4.459831855419387E-5 0.0 0.0 4.133104573691362 0.0 35 4.459831855419387E-5 0.0 0.0 4.277112544302855 0.0 36 4.459831855419387E-5 0.0 0.0 4.402478417758694 0.0 37 4.459831855419387E-5 0.0 0.0 4.533062294485373 0.0 38 4.459831855419387E-5 0.0 0.0 4.652496591573504 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAACTCG 25 4.4441982E-5 44.0 15 CGTATCT 40 8.3182385E-9 44.0 25 CTCCGTA 35 1.4469151E-7 44.0 35 CGTAGCA 30 2.528799E-6 44.0 33 CGAATCT 25 4.4441982E-5 44.0 44 CGTTTTT 14865 0.0 42.845608 1 CGGTCTA 230 0.0 40.173916 31 CGGGATA 670 0.0 40.059704 6 ACGTAAC 55 7.8216544E-11 40.0 39 GCGTAAC 105 0.0 39.809525 32 GCATAAC 50 1.3496901E-9 39.600002 9 GCGTATG 50 1.3496901E-9 39.600002 1 GCGCGAC 345 0.0 39.536232 9 AAGTACG 45 2.3526809E-8 39.11111 1 CGACGGT 225 0.0 39.11111 28 TAGTACG 90 0.0 39.11111 1 TACGGGA 1165 0.0 39.09013 4 TATGGGA 2160 0.0 39.00926 4 CTCACGA 250 0.0 38.72 24 CTATGCG 160 0.0 38.5 1 >>END_MODULE