##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545844_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1401997 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.486047402383885 31.0 31.0 33.0 30.0 34.0 2 31.89619663950779 31.0 31.0 34.0 30.0 34.0 3 31.954209602445655 31.0 31.0 34.0 30.0 34.0 4 35.719247616079066 37.0 35.0 37.0 33.0 37.0 5 35.651343048522925 37.0 35.0 37.0 33.0 37.0 6 35.69444941750945 37.0 35.0 37.0 33.0 37.0 7 35.9780056590706 37.0 35.0 37.0 35.0 37.0 8 35.95929235226609 37.0 35.0 37.0 35.0 37.0 9 37.746311867999715 39.0 38.0 39.0 35.0 39.0 10 37.246653880143825 39.0 37.0 39.0 34.0 39.0 11 36.99584449895399 39.0 37.0 39.0 33.0 39.0 12 36.41431543719423 38.0 35.0 39.0 32.0 39.0 13 36.14941401443798 38.0 35.0 39.0 32.0 39.0 14 37.122413956663245 39.0 35.0 41.0 32.0 41.0 15 37.295113327631945 39.0 35.0 41.0 32.0 41.0 16 37.44052804677899 39.0 35.0 41.0 32.0 41.0 17 37.367313196818536 39.0 35.0 41.0 32.0 41.0 18 37.244119637916484 39.0 35.0 41.0 32.0 41.0 19 37.11454304110494 38.0 35.0 41.0 32.0 41.0 20 36.91567599645363 38.0 35.0 41.0 32.0 41.0 21 36.78250452747046 38.0 35.0 41.0 32.0 41.0 22 36.71125330510693 38.0 35.0 41.0 31.0 41.0 23 36.62653343766071 38.0 35.0 40.0 31.0 41.0 24 36.66944365786803 38.0 35.0 41.0 31.0 41.0 25 36.630522747195606 38.0 35.0 41.0 31.0 41.0 26 36.394467320543484 38.0 35.0 40.0 31.0 41.0 27 36.372340311712506 38.0 35.0 40.0 31.0 41.0 28 36.3454044480837 38.0 35.0 40.0 31.0 41.0 29 36.271317271007 38.0 35.0 40.0 31.0 41.0 30 36.146369072116414 38.0 35.0 40.0 30.0 41.0 31 35.9507473981756 38.0 35.0 40.0 30.0 41.0 32 35.747274066920255 38.0 35.0 40.0 29.0 41.0 33 35.48444326200413 38.0 34.0 40.0 28.0 41.0 34 35.18716231204489 38.0 34.0 40.0 26.0 41.0 35 34.91862821389775 38.0 34.0 40.0 24.0 41.0 36 34.72441167848433 37.0 34.0 40.0 23.0 41.0 37 34.62874742242673 37.0 34.0 40.0 23.0 41.0 38 34.52138841951873 37.0 34.0 40.0 23.0 41.0 39 34.39637032033592 37.0 34.0 40.0 23.0 41.0 40 34.258118954605465 37.0 33.0 40.0 22.0 41.0 41 34.19954108318349 37.0 33.0 40.0 22.0 41.0 42 34.16199678030695 37.0 33.0 40.0 22.0 41.0 43 34.04625473520985 36.0 33.0 40.0 21.0 41.0 44 33.922636781676424 36.0 33.0 40.0 21.0 41.0 45 33.826528872743665 36.0 33.0 40.0 21.0 41.0 46 33.78632336588452 36.0 33.0 40.0 21.0 41.0 47 33.71273262353628 36.0 33.0 40.0 21.0 41.0 48 33.58152763522318 35.0 33.0 40.0 20.0 41.0 49 33.51400181312799 36.0 33.0 40.0 20.0 41.0 50 33.35399719114948 35.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 5.0 13 8.0 14 23.0 15 44.0 16 131.0 17 306.0 18 679.0 19 1411.0 20 2422.0 21 3908.0 22 5913.0 23 8412.0 24 12116.0 25 17908.0 26 26207.0 27 32171.0 28 34185.0 29 34109.0 30 37239.0 31 42291.0 32 50894.0 33 65262.0 34 110609.0 35 168227.0 36 98632.0 37 126514.0 38 192812.0 39 329559.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.222320732497998 22.38178826345563 28.96767967406492 17.428211329981448 2 34.4027840287818 23.191775731331806 29.465968900076106 12.939471339810286 3 27.669674043525056 23.16559878516145 35.96755199904137 13.197175172272125 4 25.303620478503163 27.019815306309503 34.04507998233947 13.63148423284786 5 22.997267469188593 30.907412783336913 32.047857449053026 14.047462298421465 6 20.071583605385747 40.09887325008542 29.14457020949403 10.684972935034812 7 84.86466090868954 3.5411630695358123 9.885898471965348 1.708277549809308 8 85.75531901994084 2.7204052505105216 9.715356024299624 1.808919705249013 9 81.16764871822122 5.049083557240137 11.251949897182376 2.531317827356264 10 41.52540982612659 31.93102410347526 16.33869402003 10.204872050368154 11 38.691951551964806 21.324368026465105 25.849056738352505 14.134623683217582 12 34.61854768590803 21.10104372548586 28.415538692308186 15.864869896297924 13 24.105686388772586 29.544642392244775 29.659335932958484 16.69033528602415 14 17.766942439962424 32.0157603760921 32.658843064571464 17.558454119374005 15 17.073431683520006 22.825726445919642 43.218637415058666 16.882204455501686 16 20.84398183448324 20.406534393440214 39.87447904667414 18.87500472540241 17 21.67715052172009 19.899614621143982 31.406771911780123 27.0164629453558 18 23.241989818808456 21.85040338888029 34.66355491488213 20.244051877429126 19 26.98622036994373 22.80275920704538 29.573886392053623 20.63713403095727 20 28.18971795232087 23.419236988381574 28.799419684920867 19.591625374376694 21 23.609109006652655 24.80875494027448 31.81682985056316 19.765306202509706 22 23.250976999237515 21.928149632274536 31.25862608835825 23.5622472801297 23 20.85396759051553 25.902266552638842 30.652633350855957 22.59113250598967 24 20.97172818486773 23.37066341796737 36.26819458244204 19.389413814722857 25 20.06673338102721 24.150978925061896 34.318190409822556 21.46409728408834 26 19.34105422479506 28.083512304234603 30.54528647350886 22.03014699746148 27 19.472866204421265 27.909403515128776 32.090296912190254 20.527433368259704 28 18.535132386160598 25.289069805427545 36.55314526350627 19.622652544905588 29 19.631211764361836 23.024015029989364 36.086382495825596 21.258390709823203 30 22.188635211059655 25.162464684303888 33.10192532508985 19.546974779546602 31 26.056831790652907 24.179081695609906 29.725669883744406 20.03841662999279 32 28.05847658732508 23.91417385343906 29.324884432705634 18.702465126530228 33 27.26853195834228 25.061537221548974 27.705194804268483 19.964736015840263 34 21.72151580923497 25.665461481016006 30.89985213948389 21.713170570265127 35 21.568163127310545 25.68143869066767 31.345359512181552 21.405038669840234 36 26.881155951118295 25.060324665459344 28.587436349721145 19.471083033701213 37 21.80717933062624 29.637723903831464 29.09264427812613 19.462452487416165 38 22.778936046225493 28.13501027462969 27.178374846736475 21.907678832408344 39 21.656394414538692 28.103412489470376 27.95105838314918 22.289134712841754 40 23.842989678294604 25.270310849452603 28.167250001248217 22.719449471004573 41 21.088276223130293 24.23885357814603 28.724526514678704 25.94834368404497 42 22.9246567574681 24.88528862757909 27.405336815984626 24.784717798968188 43 22.27650986414379 25.694491500338444 28.361544282905026 23.667454352612737 44 21.74648019931569 27.239002651218225 29.343928695995785 21.670588453470298 45 20.223367097076526 30.338296016325284 26.807190029650563 22.631146856947627 46 22.09163072388885 28.283298751709168 28.081943114000957 21.54312741040102 47 21.89056039349585 26.58807401157064 29.146068072898874 22.37529752203464 48 22.80832269969194 24.481079488757825 31.038154860531087 21.672442951019153 49 22.333500000356636 24.39891098197785 31.27175022485783 21.99583879280769 50 20.939417131420395 28.85469797724246 28.791502406923836 21.414382484413306 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 478.0 1 1464.0 2 2450.0 3 14729.5 4 27009.0 5 19118.0 6 11227.0 7 11077.0 8 10927.0 9 10843.0 10 10759.0 11 10594.5 12 10430.0 13 9650.0 14 8870.0 15 8337.0 16 7804.0 17 7405.5 18 7007.0 19 6786.5 20 6566.0 21 6708.5 22 6851.0 23 7418.0 24 7985.0 25 8555.0 26 9125.0 27 10807.5 28 12490.0 29 13954.5 30 15419.0 31 20019.0 32 24619.0 33 27288.0 34 29957.0 35 34728.0 36 39499.0 37 43266.0 38 47033.0 39 53920.5 40 60808.0 41 72808.0 42 84808.0 43 99889.0 44 114970.0 45 116524.5 46 118079.0 47 111778.5 48 105478.0 49 101818.0 50 98158.0 51 93332.5 52 88507.0 53 83467.5 54 78428.0 55 73512.5 56 68597.0 57 66173.5 58 63750.0 59 61056.0 60 58362.0 61 53207.5 62 48053.0 63 43280.5 64 38508.0 65 32329.5 66 26151.0 67 22153.0 68 18155.0 69 15303.0 70 12451.0 71 10598.0 72 8745.0 73 7051.0 74 5357.0 75 4604.0 76 3851.0 77 2898.0 78 1945.0 79 1587.5 80 1230.0 81 965.5 82 701.0 83 459.0 84 217.0 85 147.5 86 78.0 87 59.5 88 41.0 89 39.5 90 38.0 91 26.5 92 15.0 93 10.5 94 6.0 95 5.5 96 5.0 97 2.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1401997.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.39025574276441 #Duplication Level Percentage of deduplicated Percentage of total 1 78.09511427515592 16.704744666059966 2 6.659686369495045 2.849047892202025 3 2.461881622164706 1.5798083251954431 4 1.4192243566198306 1.2143028777783382 5 0.9759992814344403 1.0438437117318484 6 0.7204230686068916 0.9246020208293113 7 0.6207044479877956 0.9293918818191249 8 0.4991563107331639 0.8541664913757725 9 0.4222340871674338 0.8128525597041681 >10 5.78155713576141 29.79662469980111 >50 1.8038447838966944 27.270998274501718 >100 0.5394990431504382 14.811308360141764 >500 0.0 0.0 >1k 3.3760891311028284E-4 0.10774539160758789 >5k 0.0 0.0 >10k+ 3.3760891311028284E-4 1.1005628472517692 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15240 1.0870208709433757 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1492 0.10641962857267169 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.132682880205878E-5 0.0 0.0 0.029457980295250274 0.0 2 7.132682880205878E-5 0.0 0.0 0.10948668221116023 0.0 3 7.132682880205878E-5 0.0 0.0 0.15321002826682226 0.0 4 7.132682880205878E-5 0.0 0.0 0.22503614487049545 0.0 5 7.132682880205878E-5 0.0 0.0 0.37632034875966214 0.0 6 7.132682880205878E-5 0.0 0.0 0.5699726889572517 0.0 7 7.132682880205878E-5 0.0 0.0 0.7040671271051222 0.0 8 7.132682880205878E-5 0.0 0.0 1.1243248024068526 0.0 9 7.132682880205878E-5 0.0 0.0 1.3462938936388593 0.0 10 7.132682880205878E-5 0.0 0.0 1.6911591108968136 0.0 11 7.132682880205878E-5 0.0 0.0 1.9412309726768318 0.0 12 7.132682880205878E-5 0.0 0.0 2.1642699663408695 0.0 13 7.132682880205878E-5 0.0 0.0 2.2518593121097976 0.0 14 7.132682880205878E-5 0.0 0.0 2.2878080338260354 0.0 15 7.132682880205878E-5 0.0 0.0 2.3349550676641964 0.0 16 7.132682880205878E-5 0.0 0.0 2.4315315938621835 0.0 17 7.132682880205878E-5 0.0 0.0 2.543871349225426 0.0 18 7.132682880205878E-5 0.0 0.0 2.712131338369483 0.0 19 7.132682880205878E-5 0.0 0.0 2.7905908500517476 0.0 20 7.132682880205878E-5 0.0 0.0 2.886739415276923 0.0 21 7.132682880205878E-5 0.0 0.0 2.997295999920114 0.0 22 7.132682880205878E-5 0.0 0.0 3.1119895406338243 0.0 23 7.132682880205878E-5 0.0 0.0 3.230606056931648 0.0 24 7.132682880205878E-5 0.0 0.0 3.323830222175939 0.0 25 7.132682880205878E-5 0.0 0.0 3.4057847484695047 0.0 26 7.132682880205878E-5 0.0 0.0 3.4892371381679133 0.0 27 7.132682880205878E-5 0.0 0.0 3.5898792936076185 0.0 28 7.132682880205878E-5 0.0 0.0 3.6873117417512304 0.0 29 7.132682880205878E-5 0.0 0.0 3.7975116922504113 0.0 30 7.132682880205878E-5 0.0 0.0 3.9215490475371917 0.0 31 7.132682880205878E-5 0.0 0.0 4.026827446849031 0.0 32 7.132682880205878E-5 0.0 0.0 4.13039400226962 0.0 33 7.132682880205878E-5 0.0 0.0 4.238382821075937 0.0 34 7.132682880205878E-5 0.0 0.0 4.353575649591262 0.0 35 7.132682880205878E-5 0.0 0.0 4.484460380443039 0.0 36 7.132682880205878E-5 0.0 0.0 4.601008418705604 0.0 37 7.132682880205878E-5 0.0 0.0 4.728326808117278 0.0 38 7.132682880205878E-5 0.0 0.0 4.884675216851392 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGGTAA 20 7.857074E-4 44.000004 25 ATACTCG 25 4.4433426E-5 44.0 44 CGTTTTT 9595 0.0 42.555496 1 TACGGGA 485 0.0 41.27835 4 ACGGGTA 105 0.0 39.80952 5 TACGGGT 95 0.0 39.368423 4 CGGTCTA 185 0.0 39.24324 31 TTACGGG 450 0.0 38.622223 3 CGGGTAC 110 0.0 38.000004 6 AGGGATC 1405 0.0 37.893238 6 TTAGCGG 355 0.0 37.80282 2 TATTGCG 165 0.0 37.333332 1 AACGGGA 525 0.0 37.295235 4 CGACGGT 195 0.0 37.23077 28 ATAGGGC 385 0.0 37.142853 4 AAGGGAT 1885 0.0 37.11406 5 GACCGAT 600 0.0 37.033333 9 AGTACGG 185 0.0 36.864864 2 CGCATGG 90 0.0 36.666668 2 GCGAATC 30 1.3012414E-4 36.666664 18 >>END_MODULE