##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545843_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2363278 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.519309619943147 31.0 31.0 33.0 30.0 34.0 2 31.925952850235987 31.0 31.0 34.0 30.0 34.0 3 32.00694839963813 33.0 31.0 34.0 30.0 34.0 4 35.7838472663817 37.0 35.0 37.0 35.0 37.0 5 35.72709304618416 37.0 35.0 37.0 33.0 37.0 6 35.76595347648478 37.0 35.0 37.0 33.0 37.0 7 35.972605000342746 37.0 35.0 37.0 35.0 37.0 8 35.94309810356632 37.0 35.0 37.0 35.0 37.0 9 37.73402917473103 39.0 38.0 39.0 35.0 39.0 10 37.29763362583665 39.0 37.0 39.0 34.0 39.0 11 37.08577196588806 39.0 37.0 39.0 33.0 39.0 12 36.624656515230114 39.0 35.0 39.0 33.0 39.0 13 36.41932096012403 39.0 35.0 39.0 32.0 39.0 14 37.49281125622969 40.0 35.0 41.0 32.0 41.0 15 37.588518151482816 40.0 35.0 41.0 33.0 41.0 16 37.68689125866699 40.0 35.0 41.0 33.0 41.0 17 37.61147947892715 40.0 35.0 41.0 33.0 41.0 18 37.47291897102245 39.0 36.0 41.0 33.0 41.0 19 37.34092053495188 39.0 36.0 41.0 32.0 41.0 20 37.15945182919656 39.0 35.0 41.0 32.0 41.0 21 37.05001654481614 39.0 35.0 41.0 32.0 41.0 22 36.963400412477924 38.0 35.0 41.0 32.0 41.0 23 36.86112594455667 38.0 35.0 41.0 32.0 41.0 24 36.91310290198614 38.0 35.0 41.0 32.0 41.0 25 36.87390226625899 38.0 35.0 41.0 32.0 41.0 26 36.63775611671585 38.0 35.0 41.0 31.0 41.0 27 36.62610450399826 38.0 35.0 41.0 31.0 41.0 28 36.5723512003243 38.0 35.0 41.0 31.0 41.0 29 36.49239488540916 38.0 35.0 41.0 31.0 41.0 30 36.36785558025759 38.0 35.0 41.0 31.0 41.0 31 36.18920710978565 38.0 35.0 41.0 30.0 41.0 32 35.97478417689328 38.0 35.0 41.0 30.0 41.0 33 35.69588173714646 38.0 35.0 41.0 28.0 41.0 34 35.40242493688851 38.0 35.0 41.0 26.0 41.0 35 35.143484600626756 38.0 34.0 40.0 24.0 41.0 36 34.978174383208405 38.0 34.0 40.0 24.0 41.0 37 34.88985595431431 38.0 34.0 40.0 23.0 41.0 38 34.77027459317101 38.0 34.0 40.0 23.0 41.0 39 34.651582251432124 38.0 34.0 40.0 23.0 41.0 40 34.519897362900174 38.0 34.0 40.0 23.0 41.0 41 34.45579022019415 38.0 34.0 40.0 22.0 41.0 42 34.42173921138351 37.0 34.0 40.0 22.0 41.0 43 34.329397133980855 37.0 33.0 40.0 22.0 41.0 44 34.18622861973919 37.0 33.0 40.0 21.0 41.0 45 34.082110949283155 37.0 33.0 40.0 22.0 41.0 46 34.037970987755145 37.0 33.0 40.0 22.0 41.0 47 33.97329429715844 36.0 33.0 40.0 21.0 41.0 48 33.85153418260568 36.0 33.0 40.0 20.0 41.0 49 33.779846044350265 36.0 33.0 40.0 20.0 41.0 50 33.633776898020464 36.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 5.0 13 9.0 14 24.0 15 83.0 16 207.0 17 479.0 18 1072.0 19 2113.0 20 3787.0 21 5792.0 22 9153.0 23 13248.0 24 19516.0 25 29023.0 26 42364.0 27 53059.0 28 55409.0 29 55660.0 30 59216.0 31 67751.0 32 80297.0 33 102997.0 34 171610.0 35 255618.0 36 165100.0 37 218015.0 38 337969.0 39 613698.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.92126444709425 22.092915010421965 27.363517961069327 17.62230258141446 2 33.958213972287645 23.933197871769636 28.878109134854213 13.230479021088504 3 28.30043693547691 23.990956628885808 34.47469997181881 13.233906463818476 4 25.253863489610616 26.600467655519154 33.49635548589713 14.649313368973097 5 23.22655227188676 31.07260339240665 32.01675807924417 13.684086256462422 6 20.371069336743286 39.908550750271445 28.817980787702506 10.902399125282763 7 84.34314541073881 3.8059001099320517 10.247249794565008 1.6037046847641285 8 85.12891839216546 3.078816795992685 10.035383056923477 1.7568817549183804 9 79.91230824304209 5.939419738177227 11.413765117772856 2.7345069010078373 10 38.164320913578514 34.91002751263288 16.54223498039587 10.383416593392738 11 36.08191672752846 21.788422690855665 26.747763064692347 15.381897516923527 12 32.72213425589372 21.322925191196298 29.601299550878057 16.353641002031925 13 23.399320773941955 28.243947601594055 31.1671331091814 17.189598515282587 14 17.87216738784011 30.431206146716548 33.977213006679705 17.719413458763633 15 18.249863113861338 23.15444903223404 40.989422319337805 17.606265534566816 16 21.58192984490187 21.492223936413744 38.321687080402725 18.60415913828166 17 21.562803868186474 21.08871660464829 31.810984573122585 25.53749495404265 18 23.5860529315637 22.573941787635647 33.969638781387545 19.8703664994131 19 26.22052928178572 24.04224132751204 29.450280500220455 20.286948890481778 20 27.089237914456106 23.995145725555776 29.524457131154268 19.39115922883385 21 24.269129573414556 24.714485557771877 31.351537990875382 19.664846877938185 22 23.401944248624158 22.88351180013524 30.567330631436505 23.147213319804102 23 21.137293200376764 25.677131509708122 30.99169881833623 22.193876471578882 24 21.47030522858504 23.396528042828646 35.64383876970885 19.48932795887746 25 20.87651135414454 24.65918101890679 33.00056108506913 21.46374654187954 26 20.37187330479106 27.86371302910618 30.374251357648145 21.390162308454613 27 20.35951758532005 26.552821970161784 32.32802065605485 20.759639788463314 28 18.862867593232792 25.740771927805362 35.03946636832399 20.356894110637853 29 20.211799035069085 23.875735313407905 34.41330220143377 21.499163450089238 30 21.77924052946797 25.402174437370466 32.543314836426354 20.275270196735214 31 25.77178816880621 25.064127030336675 29.27945844712302 19.88462635373409 32 26.233350456442277 24.902360196303608 29.723629636462572 19.140659710791535 33 24.983518655020696 26.040525067300592 29.147142232103036 19.82881404557568 34 21.185108142165245 26.682599338715125 31.261535883632817 20.870756635486813 35 21.345436296533883 26.626702402341156 31.320479435766764 20.7073818653582 36 25.50715573876624 27.230524720324905 27.752003784573798 19.510315756335057 37 22.099981466420793 30.09070452143167 27.989216672774003 19.820097339373532 38 22.09625782493638 29.836481361904948 26.615023708594588 21.452237104564084 39 22.969028611953394 28.204680109576614 27.535482495076753 21.290808783393235 40 23.95427029744279 26.1045886264756 27.703257932414218 22.237883143667396 41 20.58682897230034 25.878842861483076 28.33598078600994 25.19834738020664 42 22.200477472392162 26.71992038177481 26.928359676686362 24.15124246914667 43 22.473911236849833 25.594280486679942 28.38447275352286 23.547335522947364 44 22.20919417859431 27.372869378888137 28.453614005631163 21.964322436886395 45 20.509732667929885 29.888696970902277 26.882998953148974 22.71857140801886 46 21.920738905875652 28.528721546936076 28.35413353824645 21.196406008941818 47 21.49852873847258 26.790246428900875 29.337936544071415 22.373288288555134 48 22.25683986395168 25.493826794816353 30.2583530164458 21.990980324786165 49 22.11834578919619 25.546761743645902 30.478682575642814 21.856209891515093 50 20.515233501940948 28.541246522838193 29.26050172683874 21.68301824838212 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 899.0 1 2509.5 2 4120.0 3 27324.5 4 50529.0 5 35556.0 6 20583.0 7 19659.5 8 18736.0 9 18418.0 10 18100.0 11 17332.0 12 16564.0 13 15703.0 14 14842.0 15 13830.0 16 12818.0 17 12069.0 18 11320.0 19 11119.0 20 10918.0 21 11155.0 22 11392.0 23 12791.5 24 14191.0 25 15900.0 26 17609.0 27 21488.0 28 25367.0 29 30933.5 30 36500.0 31 41999.0 32 47498.0 33 51885.0 34 56272.0 35 64723.5 36 73175.0 37 77354.5 38 81534.0 39 92584.0 40 103634.0 41 120846.5 42 138059.0 43 154796.5 44 171534.0 45 177142.5 46 182751.0 47 177077.0 48 171403.0 49 162652.5 50 153902.0 51 151541.5 52 149181.0 53 141449.5 54 133718.0 55 127465.0 56 121212.0 57 116954.5 58 112697.0 59 108878.0 60 105059.0 61 93695.5 62 82332.0 63 72476.5 64 62621.0 65 53309.0 66 43997.0 67 36627.5 68 29258.0 69 25641.0 70 22024.0 71 18165.0 72 14306.0 73 11893.0 74 9480.0 75 7672.5 76 5865.0 77 4700.5 78 3536.0 79 2714.0 80 1892.0 81 1440.5 82 989.0 83 654.0 84 319.0 85 321.5 86 324.0 87 209.0 88 94.0 89 81.5 90 69.0 91 50.0 92 31.0 93 23.0 94 15.0 95 10.5 96 6.0 97 4.0 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2363278.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.947342893926535 #Duplication Level Percentage of deduplicated Percentage of total 1 78.53780877784459 14.880827930514547 2 6.51632144344519 2.4693395359200463 3 2.3327097668932364 1.3259595547601275 4 1.3465421926405952 1.0205358658040415 5 0.9441611510758454 0.8944672538279208 6 0.6699506330734071 0.7616270620107002 7 0.5431789630090184 0.7204258645429517 8 0.4283993925321929 0.6493624148685833 9 0.397232228782228 0.6773845722529992 >10 5.502003681514246 25.6043282658747 >50 1.8505802551825281 24.874893811078234 >100 0.9277141238734696 24.418049618222387 >500 0.002264926755580211 0.2659831032914269 >1k 9.059707022320843E-4 0.3044772697406702 >5k 0.0 0.0 >10k+ 2.2649267555802108E-4 1.1323378772906727 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26386 1.1165000478149416 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3174 0.13430497808552358 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02378052857090871 0.0 2 0.0 0.0 0.0 0.06947976497051976 0.0 3 0.0 0.0 0.0 0.1048120449646635 0.0 4 0.0 0.0 0.0 0.15025739671761004 0.0 5 0.0 0.0 0.0 0.2557041532989348 0.0 6 0.0 0.0 0.0 0.3980911259699451 0.0 7 0.0 0.0 0.0 0.5041725941679311 0.0 8 0.0 0.0 0.0 0.7659276648790366 0.0 9 0.0 0.0 0.0 0.9138577856688888 0.0 10 0.0 0.0 0.0 1.135879909176999 0.0 11 0.0 0.0 0.0 1.3019204680955858 0.0 12 0.0 0.0 0.0 1.4663530909186309 0.0 13 0.0 0.0 0.0 1.5339710351469442 0.0 14 4.2314107777417635E-5 0.0 0.0 1.5635909105911365 0.0 15 4.2314107777417635E-5 0.0 0.0 1.6019698063452543 0.0 16 4.2314107777417635E-5 0.0 0.0 1.674284616536861 0.0 17 4.2314107777417635E-5 0.0 0.0 1.758574319229477 0.0 18 4.2314107777417635E-5 0.0 0.0 1.887843918489488 0.0 19 4.2314107777417635E-5 0.0 0.0 1.9508073108622854 0.0 20 4.2314107777417635E-5 0.0 0.0 2.0195254218928116 0.0 21 4.2314107777417635E-5 0.0 0.0 2.0999645407776826 0.0 22 4.2314107777417635E-5 0.0 0.0 2.1937749177202175 0.0 23 4.2314107777417635E-5 0.0 0.0 2.288177692171636 0.0 24 4.2314107777417635E-5 0.0 0.0 2.366289535128749 0.0 25 4.2314107777417635E-5 0.0 0.0 2.4324264855848527 0.0 26 4.2314107777417635E-5 0.0 0.0 2.5003829426753854 0.0 27 4.2314107777417635E-5 0.0 0.0 2.575405855764747 0.0 28 4.2314107777417635E-5 0.0 0.0 2.6529676153207538 0.0 29 4.2314107777417635E-5 0.0 0.0 2.7418272416533305 0.0 30 4.2314107777417635E-5 0.0 0.0 2.8511245820424005 0.0 31 4.2314107777417635E-5 0.0 0.0 2.9438347921827224 0.0 32 4.2314107777417635E-5 0.0 0.0 3.039506989867464 0.0 33 4.2314107777417635E-5 0.0 0.0 3.134459847719989 0.0 34 4.2314107777417635E-5 0.0 0.0 3.237917841235775 0.0 35 4.2314107777417635E-5 0.0 0.0 3.358343791970306 0.0 36 4.2314107777417635E-5 0.0 0.0 3.4648484012460656 0.0 37 4.2314107777417635E-5 0.0 0.0 3.578546408843987 0.0 38 4.2314107777417635E-5 0.0 0.0 3.7227528881494263 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTATCG 30 2.5288573E-6 44.0 34 CGTTTTT 17065 0.0 42.63346 1 CGTAAGG 335 0.0 40.059704 2 TACGGGA 1060 0.0 40.056606 4 CGGGATA 640 0.0 39.1875 6 CGTTCGA 75 0.0 38.13333 14 GCGGGAT 1565 0.0 37.814697 5 ATAGGGC 1055 0.0 37.744076 4 ACGACTA 35 7.2934727E-6 37.714287 21 GGGCGAT 3350 0.0 37.62985 7 ACGGGAC 620 0.0 37.612904 5 CGGTCTA 275 0.0 37.6 31 TAAGGGA 3200 0.0 37.46875 4 TATTACG 65 1.0913936E-11 37.23077 1 AGGGATC 2290 0.0 37.17904 6 GTTTTTT 20580 0.0 36.998055 2 GACCGAT 810 0.0 36.93827 9 CGACGGT 280 0.0 36.928574 28 GCGTAAG 155 0.0 36.903225 1 CGCTAAT 30 1.3015115E-4 36.666664 18 >>END_MODULE