##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545842_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2185736 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.6835034057178 31.0 31.0 33.0 30.0 34.0 2 32.109077674522446 33.0 31.0 34.0 30.0 34.0 3 32.152498746417685 33.0 31.0 34.0 30.0 34.0 4 35.82833928708682 37.0 35.0 37.0 35.0 37.0 5 35.78726570820996 37.0 35.0 37.0 35.0 37.0 6 35.849243916008156 37.0 35.0 37.0 35.0 37.0 7 36.08440269090137 37.0 35.0 37.0 35.0 37.0 8 36.046959010603295 37.0 35.0 37.0 35.0 37.0 9 37.870353052701695 39.0 39.0 39.0 35.0 39.0 10 37.59434625224638 39.0 37.0 39.0 35.0 39.0 11 37.26965150411578 39.0 37.0 39.0 34.0 39.0 12 36.06347701643748 37.0 35.0 39.0 33.0 39.0 13 35.638547839263296 37.0 35.0 39.0 32.0 39.0 14 36.49508266323106 38.0 35.0 41.0 32.0 41.0 15 36.84159203124256 38.0 35.0 41.0 33.0 41.0 16 36.99181282643467 38.0 35.0 41.0 33.0 41.0 17 36.90147346248586 37.0 35.0 41.0 33.0 41.0 18 36.87608521797692 37.0 35.0 41.0 33.0 41.0 19 36.825213566505745 37.0 35.0 41.0 33.0 41.0 20 36.64626103060937 36.0 35.0 41.0 33.0 41.0 21 36.47828649022572 36.0 35.0 41.0 32.0 41.0 22 36.444661660877614 36.0 35.0 41.0 32.0 41.0 23 36.45500646006654 35.0 35.0 40.0 32.0 41.0 24 36.44375533001241 35.0 35.0 41.0 32.0 41.0 25 36.36943299648265 35.0 35.0 40.0 32.0 41.0 26 36.26313973874247 35.0 35.0 40.0 32.0 41.0 27 36.146290311364226 35.0 35.0 40.0 32.0 41.0 28 36.185641358334216 36.0 35.0 40.0 32.0 41.0 29 36.17220606697241 36.0 35.0 40.0 32.0 41.0 30 36.11175686359194 36.0 35.0 40.0 32.0 41.0 31 35.909197176603215 36.0 35.0 40.0 31.0 41.0 32 35.659904947349546 35.0 35.0 40.0 31.0 41.0 33 35.4605556206239 35.0 35.0 40.0 30.0 41.0 34 35.249467913782816 35.0 35.0 40.0 30.0 41.0 35 35.06707397416705 35.0 35.0 40.0 29.0 41.0 36 34.84684792673955 35.0 34.0 40.0 27.0 41.0 37 34.72862093134761 35.0 34.0 40.0 27.0 41.0 38 34.71211207574931 35.0 34.0 40.0 27.0 41.0 39 34.771581288865626 35.0 34.0 40.0 27.0 41.0 40 34.62214009377162 35.0 34.0 40.0 26.0 41.0 41 34.576208197147324 35.0 34.0 40.0 26.0 41.0 42 34.5494744104503 35.0 34.0 40.0 26.0 41.0 43 34.482538147333436 35.0 34.0 40.0 26.0 41.0 44 34.38622505188184 35.0 34.0 40.0 26.0 41.0 45 34.20923341153735 35.0 34.0 40.0 24.0 41.0 46 33.98223527452538 35.0 34.0 39.0 24.0 41.0 47 33.908999531507924 35.0 34.0 39.0 23.0 41.0 48 34.04279519576015 35.0 34.0 39.0 24.0 41.0 49 34.12380452168057 35.0 34.0 39.0 24.0 41.0 50 34.02171122221531 35.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 1.0 13 8.0 14 22.0 15 40.0 16 103.0 17 296.0 18 741.0 19 1565.0 20 2792.0 21 4519.0 22 7034.0 23 10401.0 24 15287.0 25 23129.0 26 32392.0 27 41828.0 28 44065.0 29 43511.0 30 48573.0 31 58322.0 32 73436.0 33 99703.0 34 210952.0 35 508124.0 36 103793.0 37 124156.0 38 209416.0 39 521525.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.69396304036718 23.164782938104146 30.831262329942867 15.30999169158581 2 29.01388822803852 26.477031077861184 31.595673036450876 12.913407657649415 3 26.85415805019453 26.363247894530723 32.940940717451696 13.841653337823049 4 24.632023263559734 27.97465018648181 31.783939139951027 15.60938741000743 5 22.698669921710582 32.702805828334256 30.90414395883126 13.694380291123906 6 20.60655998711647 39.714906100279265 28.06903486971894 11.609499042885325 7 85.79274898706889 4.995022271674164 7.557591584711054 1.6546371565458957 8 88.14870597363999 3.386410801670467 6.710233989832258 1.7546492348572746 9 85.28706120043775 4.189344001288353 8.104363930502128 2.419230867771771 10 59.949280242444644 22.299902641490096 10.799840419886024 6.950976696179227 11 51.61378135328329 17.538119882730577 14.885146239070043 15.962952524916094 12 45.423921278690564 19.61041955661617 22.30068041154101 12.664978753152257 13 17.048765267168587 46.249318307425966 28.063178718747366 8.638737706658077 14 9.018243740323625 45.919635308198245 31.949604160795264 13.112516790682863 15 7.987698422865341 17.522518730532873 64.02484106040254 10.46494178619925 16 16.199852132187967 10.942538348638628 56.70122100747758 16.156388511695834 17 14.198146528217498 15.602433230728687 28.33251591226022 41.866904328793595 18 16.59029269774575 18.91436111222947 43.73675503354477 20.758591156480012 19 27.391871662451457 17.838430624741505 36.09887012887192 18.670827583935115 20 29.054744031301126 16.885525058836016 28.78357679060966 25.276154119253196 21 17.467114052200266 24.496233762906407 35.69786104085763 22.338791144035692 22 25.371682581976962 21.481688547930766 26.456671802999082 26.68995706709319 23 17.704196664190004 35.87066324569847 22.324608278401417 24.100531811710106 24 14.792225593575804 23.25893886544395 41.01469710889147 20.93413843208878 25 10.560012737128362 28.90957553885739 39.00585432092439 21.524557403089855 26 14.928243850126458 37.38571355369542 28.88450389251035 18.80153870366778 27 15.973612549731534 41.75440217848816 27.05198615020295 15.219999121577354 28 12.647135793160746 29.691920707715845 39.165708941976526 18.495234557146883 29 11.363677955617696 21.5821581380368 45.51052826141858 21.543635644926926 30 13.301926673669648 30.098968951419568 36.19485610339034 20.40424827152044 31 29.707842118169808 28.08248571648177 23.70149002441283 18.508182140935595 32 36.30712949779845 24.264778545990914 27.280055779838 12.148036176372628 33 37.65436447951628 22.53899830537631 23.395734892045517 16.410902323061887 34 20.957151275359877 28.513873587661088 28.235294655896233 22.293680481082802 35 17.597093153061486 27.73866560279924 33.72790675543615 20.936334488703118 36 38.58906107599454 22.18991680605526 24.461417115333234 14.759605002616969 37 21.467963194091144 38.00770083852762 26.10470797937171 14.41962798800953 38 16.658141696892944 41.877930363044754 19.659922332797738 21.804005607264557 39 16.660612260584077 38.324482005146095 26.34243110787396 18.672474626395868 40 21.425551850726713 25.405355450063503 22.769584249881962 30.399508449327822 41 12.67737732278738 23.50137436543114 23.204220454803327 40.617027856978154 42 18.11508800696882 26.875935611620065 21.51101505396809 33.49796132744302 43 18.466914577057796 27.66500620385994 26.424783230911693 27.443295988170576 44 20.233504869755542 31.976185596064667 27.790867698569272 19.999441835610522 45 19.297298484354926 39.57682904065267 18.54876343712141 22.577109037870997 46 21.892122378914927 32.25298023183038 25.557203614709188 20.297693774545507 47 23.830142341069553 23.42638818228734 26.23642562505261 26.507043851590495 48 22.38019596145189 19.33312165787634 29.486269156018842 28.80041322465293 49 18.147205334953533 21.02010489830428 36.11117719614811 24.72151257059407 50 19.409571878763035 33.534059008041226 24.61784039792546 22.43852871527028 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2619.0 1 3055.0 2 3491.0 3 9485.5 4 15480.0 5 12472.5 6 9465.0 7 10752.0 8 12039.0 9 13225.5 10 14412.0 11 14100.5 12 13789.0 13 13354.5 14 12920.0 15 11465.0 16 10010.0 17 9094.5 18 8179.0 19 7633.0 20 7087.0 21 6710.0 22 6333.0 23 6167.5 24 6002.0 25 5648.5 26 5295.0 27 6863.5 28 8432.0 29 10461.0 30 12490.0 31 13895.5 32 15301.0 33 18490.5 34 21680.0 35 27427.5 36 33175.0 37 33345.0 38 33515.0 39 59097.0 40 84679.0 41 143014.0 42 201349.0 43 249702.5 44 298056.0 45 329980.0 46 361904.0 47 336005.5 48 310107.0 49 272206.0 50 234305.0 51 193711.0 52 153117.0 53 124742.5 54 96368.0 55 78495.5 56 60623.0 57 55421.5 58 50220.0 59 40153.0 60 30086.0 61 25897.0 62 21708.0 63 17518.0 64 13328.0 65 10712.0 66 8096.0 67 6174.0 68 4252.0 69 3663.0 70 3074.0 71 2220.5 72 1367.0 73 1065.5 74 764.0 75 518.0 76 272.0 77 236.5 78 201.0 79 142.5 80 84.0 81 60.5 82 37.0 83 24.5 84 12.0 85 11.0 86 10.0 87 5.0 88 0.0 89 1.0 90 2.0 91 1.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2185736.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.235239505024548 #Duplication Level Percentage of deduplicated Percentage of total 1 79.81219331194839 10.563334939049554 2 9.237905338608018 2.44531779362444 3 3.1728561989816857 1.259805351255733 4 1.4809798163096246 0.7840449028386056 5 0.8059090500385665 0.5333199648263621 6 0.47753796268786775 0.37921975853492434 7 0.3596052702252739 0.3331623315090401 8 0.24394345463000774 0.2582920038168994 9 0.20086648144734012 0.23926643914384052 >10 1.7443751134082155 5.024989538860235 >50 0.5387328060207623 5.1655475994822115 >100 1.7344397565422804 56.35491729963512 >500 0.1819097768055638 13.94696915385294 >1k 0.007696182864850777 1.3775287365896682 >5k 6.99652987713707E-4 0.6225085326515223 >10k+ 3.498264938568535E-4 0.7117756543288846 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 15373 0.703332881921696 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8376 0.3832118792022458 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCC 5069 0.23191272871014612 No Hit GAATCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTT 3023 0.1383058155239242 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06501242602034281 0.0 2 0.0 0.0 0.0 0.2855788622230681 0.0 3 0.0 0.0 0.0 0.3948326787864591 0.0 4 0.0 0.0 0.0 0.6091769545818891 0.0 5 0.0 0.0 0.0 1.1313809170000402 0.0 6 0.0 0.0 0.0 1.4630312169447728 0.0 7 0.0 0.0 0.0 1.7257344894351376 0.0 8 0.0 0.0 0.0 2.203056544797725 0.0 9 0.0 0.0 0.0 2.3576040290318683 0.0 10 0.0 0.0 0.0 2.847782165824235 0.0 11 0.0 0.0 0.0 3.092642478323091 0.0 12 0.0 0.0 0.0 3.417796110783736 0.0 13 0.0 0.0 0.0 3.526043401398888 0.0 14 0.0 0.0 0.0 3.5635593685605214 0.0 15 0.0 0.0 0.0 3.62811428278621 0.0 16 0.0 0.0 0.0 3.7483026312418333 0.0 17 0.0 0.0 0.0 3.900242298246449 0.0 18 0.0 0.0 0.0 4.187605456468668 0.0 19 0.0 0.0 0.0 4.267715771712595 0.0 20 4.5751179465406616E-5 0.0 0.0 4.360133154232716 0.0 21 4.5751179465406616E-5 0.0 0.0 4.495785401347646 0.0 22 4.5751179465406616E-5 0.0 0.0 4.605679734423553 0.0 23 4.5751179465406616E-5 0.0 0.0 4.74037120676971 0.0 24 4.5751179465406616E-5 0.0 0.0 4.82862523195848 0.0 25 4.5751179465406616E-5 0.0 0.0 4.913402167507878 0.0 26 4.5751179465406616E-5 0.0 0.0 5.00312023043954 0.0 27 4.5751179465406616E-5 0.0 0.0 5.0705574689715505 0.0 28 4.5751179465406616E-5 0.0 0.0 5.138269214580352 0.0 29 4.5751179465406616E-5 0.0 0.0 5.21796776920909 0.0 30 4.5751179465406616E-5 0.0 0.0 5.342639733252323 0.0 31 4.5751179465406616E-5 0.0 0.0 5.466762683141972 0.0 32 4.5751179465406616E-5 0.0 0.0 5.5797680964215255 0.0 33 4.5751179465406616E-5 0.0 0.0 5.670080924686238 0.0 34 4.5751179465406616E-5 0.0 0.0 5.761674785975982 0.0 35 4.5751179465406616E-5 0.0 0.0 5.922078421181698 0.0 36 4.5751179465406616E-5 0.0 0.0 6.040345220099774 0.0 37 9.150235893081323E-5 0.0 0.0 6.1739386641387615 0.0 38 9.150235893081323E-5 0.0 0.0 6.2789376210118695 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCGAG 40 8.3182385E-9 44.0 1 ACGCGAA 25 4.4441622E-5 44.0 30 TATCATC 55 1.8189894E-12 44.0 41 TATTTCG 35 1.4468787E-7 44.0 1 TCTTGTC 30 2.5287682E-6 44.0 34 AACCGAG 80 0.0 44.0 1 ATCTCGA 25 4.4441622E-5 44.0 12 ACCGGTT 20 7.858041E-4 44.0 34 AGTCCAT 25 4.4441622E-5 44.0 27 GTACCAT 50 2.7284841E-11 44.0 38 AAATCCG 35 1.4468787E-7 44.0 21 CGTATTG 20 7.858041E-4 44.0 38 GCGACGG 165 0.0 44.0 2 ACGCCAT 30 2.5287682E-6 44.0 34 GCGACAG 35 1.4468787E-7 44.0 1 TACTTGC 95 0.0 44.0 19 ATCTACG 30 2.5287682E-6 44.0 1 GTCGACG 25 4.4441622E-5 44.0 1 GTCTGGC 25 4.4441622E-5 44.0 21 AGTCAAT 95 0.0 44.0 14 >>END_MODULE