##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545840_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 646068 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.76167059814137 31.0 31.0 33.0 30.0 34.0 2 32.20367825058663 33.0 31.0 34.0 31.0 34.0 3 32.249622330776326 34.0 31.0 34.0 30.0 34.0 4 35.90986862064055 37.0 35.0 37.0 35.0 37.0 5 35.91421800801154 37.0 35.0 37.0 35.0 37.0 6 35.96292805091724 37.0 35.0 37.0 35.0 37.0 7 36.137414327903564 37.0 35.0 37.0 35.0 37.0 8 36.090442492121575 37.0 35.0 37.0 35.0 37.0 9 37.872788932434354 39.0 38.0 39.0 35.0 39.0 10 37.6271073633116 39.0 37.0 39.0 35.0 39.0 11 37.408018970139366 39.0 37.0 39.0 35.0 39.0 12 36.61773838048007 39.0 35.0 39.0 33.0 39.0 13 36.33414129782005 39.0 35.0 39.0 33.0 39.0 14 37.318646024876635 39.0 35.0 41.0 33.0 41.0 15 37.526484828222415 40.0 35.0 41.0 33.0 41.0 16 37.61760062408291 39.0 35.0 41.0 33.0 41.0 17 37.54462533355622 39.0 35.0 41.0 33.0 41.0 18 37.47032820074667 39.0 35.0 41.0 33.0 41.0 19 37.40346526990967 39.0 35.0 41.0 33.0 41.0 20 37.25222577190017 39.0 35.0 41.0 33.0 41.0 21 37.134111270021116 39.0 35.0 41.0 33.0 41.0 22 37.13568850337735 39.0 35.0 41.0 33.0 41.0 23 37.146193589529275 39.0 35.0 41.0 33.0 41.0 24 37.10407418414161 38.0 35.0 41.0 33.0 41.0 25 36.995276039054716 38.0 35.0 41.0 33.0 41.0 26 36.87301646266337 38.0 35.0 41.0 33.0 41.0 27 36.79284533516596 38.0 35.0 41.0 32.0 41.0 28 36.77003194710154 38.0 35.0 41.0 32.0 41.0 29 36.742003937666006 38.0 35.0 41.0 32.0 41.0 30 36.64408545230533 38.0 35.0 41.0 32.0 41.0 31 36.46835472427051 38.0 35.0 41.0 31.0 41.0 32 36.267657584031404 38.0 35.0 41.0 31.0 41.0 33 36.116995424630225 38.0 35.0 41.0 30.0 41.0 34 35.948972863537584 38.0 35.0 41.0 30.0 41.0 35 35.74063101716847 38.0 35.0 41.0 30.0 41.0 36 35.57228496071621 38.0 35.0 40.0 29.0 41.0 37 35.50556597757512 38.0 35.0 40.0 29.0 41.0 38 35.425063615594645 38.0 35.0 40.0 28.0 41.0 39 35.38977940402558 38.0 35.0 40.0 28.0 41.0 40 35.21057690521741 37.0 35.0 40.0 27.0 41.0 41 35.122541280484405 37.0 34.0 40.0 27.0 41.0 42 35.087371607942195 37.0 34.0 40.0 27.0 41.0 43 35.028037296383665 37.0 34.0 40.0 27.0 41.0 44 34.88686949361367 37.0 34.0 40.0 26.0 41.0 45 34.795165524372045 36.0 34.0 40.0 26.0 41.0 46 34.779784790455494 36.0 34.0 40.0 26.0 41.0 47 34.71949547106497 36.0 34.0 40.0 26.0 41.0 48 34.658210900400576 36.0 34.0 40.0 25.0 41.0 49 34.618160936619674 36.0 34.0 40.0 26.0 41.0 50 34.45070178371317 36.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 2.0 12 3.0 13 6.0 14 17.0 15 23.0 16 26.0 17 84.0 18 233.0 19 401.0 20 742.0 21 1294.0 22 1932.0 23 2866.0 24 4221.0 25 5993.0 26 8753.0 27 10761.0 28 11487.0 29 11503.0 30 12990.0 31 15423.0 32 19116.0 33 25909.0 34 51675.0 35 105923.0 36 36178.0 37 47467.0 38 83010.0 39 188028.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.551836648773815 23.500931790461685 29.17943622033594 14.767795340428561 2 33.092027464601244 24.47915699276237 29.096472817102843 13.332342725533536 3 29.390714290136643 23.975030492146338 33.09527789644434 13.538977321272682 4 26.209934557972225 27.099469405697235 32.47970801835101 14.210888017979531 5 23.500622225524246 31.380133360575048 30.994879795934793 14.12436461796591 6 21.538909216986447 40.253967074673255 28.05973984162658 10.14738386671372 7 86.34029235312691 4.328646520180538 7.6300017954766375 1.701059331215909 8 88.0981568503625 3.0238303088838943 7.166583084133558 1.7114297566200463 9 83.57185311762848 5.077484103840463 8.924292798900426 2.426369979630627 10 48.01677222831033 27.47419776246463 14.237665385067826 10.27136462415721 11 44.273203439885584 19.841255100082343 22.908888847613564 12.976652612418507 12 39.55373118619093 21.466780586563644 25.45738219506306 13.522106032182371 13 22.73259161574323 36.77136152850783 25.771745389030258 14.724301466718673 14 16.538816347505218 37.74680064637159 30.60978101376326 15.104601992359937 15 15.743234458292315 22.942012295919316 46.759938582316416 14.554814663471957 16 18.00894023539318 19.188382647027865 43.213562659038985 19.589114458539967 17 18.489539800764007 19.48927976621656 30.24898307918052 31.772197353838916 18 22.515431812131233 23.150349498814364 34.58939306698366 19.744825622070742 19 27.65869846517704 24.229183305782055 27.92972256790307 20.182395661137836 20 29.70987574063411 22.82886631128612 27.61303763690509 19.848220311174675 21 22.723923797495 26.50448559594346 30.099617996867202 20.671972609694336 22 22.792647213606 23.177745995777535 28.37054303881325 25.659063751803217 23 19.96771237702533 29.02759461852313 27.15441718209229 23.850275822359258 24 19.9523889126222 23.3401128054632 39.33254703839225 17.374951243522354 25 18.511983258728186 25.791093197620064 35.669465133701095 20.027458409950654 26 17.566262374858375 31.93781459536767 29.679074029359136 20.816849000414816 27 18.048409764916386 31.938433725242543 30.818737346533183 19.194419163307888 28 15.936557761721676 27.434418668003985 37.95003002779893 18.678993542475407 29 17.02173764990682 24.119906882866818 37.6915433050391 21.166812162187263 30 19.576267513636335 29.582799333816258 32.03904232990954 18.801890822637866 31 27.865487843384905 26.3035779515469 27.287220540252726 18.543713664815467 32 28.58615501773807 25.456298717782026 28.300890927889945 17.656655336589957 33 26.768544487577163 27.18815976027291 26.702142808496937 19.34115294365299 34 19.396255502516762 26.764984490796635 30.814403437409066 23.024356569277536 35 21.237083402985444 26.05731904381582 32.086560547806116 20.61903700539262 36 28.305843966888933 26.0051573518577 27.359039605738094 18.32995907551527 37 20.124042670430974 31.826526000359095 29.712507042602326 18.3369242866076 38 20.60185615136487 31.572527969192098 26.479101271073635 21.346514608369397 39 20.75601949020846 30.947516360506945 28.176291040571584 20.120173108713015 40 24.585337766303237 26.805537497600874 26.743624510113484 21.865500225982405 41 19.1006209872645 25.252450206479814 28.56433068964877 27.08259811660692 42 22.51961093878663 25.264213674102415 26.098181615557497 26.11799377155346 43 22.352910219976845 26.555409028151832 27.313533559934868 23.77814719193645 44 19.425199824167116 29.74655918572039 29.037965043927265 21.79027594618523 45 18.24157828587703 35.629840821709166 24.422970956617572 21.705609935796232 46 21.052892265210474 31.278131713689582 27.91904257756149 19.74993344353845 47 22.024307038887546 27.371886550641726 28.645127138319804 21.95867927215092 48 22.734294222899138 25.118872935975777 31.619272274745075 20.52756056638001 49 21.386912832704915 24.608864701548445 32.511593206907015 21.492629258839628 50 19.524879734021805 32.68324696471579 27.981729477392474 19.810143823869932 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 359.0 1 926.0 2 1493.0 3 4408.0 4 7323.0 5 5366.0 6 3409.0 7 3388.0 8 3367.0 9 3378.5 10 3390.0 11 3336.5 12 3283.0 13 3077.0 14 2871.0 15 2638.0 16 2405.0 17 2306.5 18 2208.0 19 2185.0 20 2162.0 21 2441.0 22 2720.0 23 2905.5 24 3091.0 25 3488.0 26 3885.0 27 4483.5 28 5082.0 29 6794.5 30 8507.0 31 10287.5 32 12068.0 33 13833.0 34 15598.0 35 17942.0 36 20286.0 37 21140.5 38 21995.0 39 28518.0 40 35041.0 41 43497.0 42 51953.0 43 58122.0 44 64291.0 45 63625.0 46 62959.0 47 57747.5 48 52536.0 49 52501.0 50 52466.0 51 49642.0 52 46818.0 53 42526.0 54 38234.0 55 34934.0 56 31634.0 57 28645.0 58 25656.0 59 22700.5 60 19745.0 61 16840.0 62 13935.0 63 12289.0 64 10643.0 65 8247.0 66 5851.0 67 4676.0 68 3501.0 69 2803.0 70 2105.0 71 1724.5 72 1344.0 73 1042.5 74 741.0 75 655.0 76 569.0 77 410.0 78 251.0 79 185.5 80 120.0 81 107.0 82 94.0 83 64.5 84 35.0 85 29.0 86 23.0 87 17.0 88 11.0 89 7.0 90 3.0 91 2.5 92 2.0 93 2.5 94 3.0 95 2.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 646068.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.125778269362765 #Duplication Level Percentage of deduplicated Percentage of total 1 76.46238231875071 14.624025701756699 2 5.967802374525718 2.2827772994111095 3 2.369322310767235 1.3594539949316504 4 1.478519891275683 1.1311137442952421 5 1.1572536621942375 1.1066688472267512 6 0.8928637117507412 1.024602802542294 7 0.760088866719263 1.0176103790918696 8 0.5997502210432126 0.9176551795739032 9 0.5761462120087966 0.9917320231452161 >10 6.893393494399762 30.68789772674482 >50 2.2972551937938737 31.253487857060414 >100 0.5435942151804136 12.807193980228812 >500 0.0 0.0 >1k 0.00162752759036052 0.7957804639912249 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3476 0.5380238612653776 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1637 0.25337890129212404 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01810954884006018 0.0 2 0.0 0.0 0.0 0.08791644223208703 0.0 3 0.0 0.0 0.0 0.12521901719323664 0.0 4 0.0 0.0 0.0 0.17165375780877554 0.0 5 0.0 0.0 0.0 0.29903972956407066 0.0 6 0.0 0.0 0.0 0.3911352984515562 0.0 7 0.0 0.0 0.0 0.454905675563563 0.0 8 0.0 0.0 0.0 0.6194394398112892 0.0 9 0.0 0.0 0.0 0.6876985085161315 0.0 10 0.0 0.0 0.0 0.8271575128314667 0.0 11 0.0 0.0 0.0 0.9591869586483156 0.0 12 0.0 0.0 0.0 1.0782146770928138 0.0 13 0.0 0.0 0.0 1.1232563754898865 0.0 14 0.0 0.0 0.0 1.1436876613607236 0.0 15 0.0 0.0 0.0 1.1727867654797948 0.0 16 0.0 0.0 0.0 1.2331519282799952 0.0 17 0.0 0.0 0.0 1.3088405554833238 0.0 18 0.0 0.0 0.0 1.423224799866268 0.0 19 0.0 0.0 0.0 1.4719812775125838 0.0 20 0.0 0.0 0.0 1.527238618845075 0.0 21 0.0 0.0 0.0 1.6016889862986559 0.0 22 0.0 0.0 0.0 1.673972399190178 0.0 23 0.0 0.0 0.0 1.7555427602048082 0.0 24 0.0 0.0 0.0 1.815288793130135 0.0 25 0.0 0.0 0.0 1.867450485088257 0.0 26 0.0 0.0 0.0 1.9213147842022822 0.0 27 0.0 0.0 0.0 1.9883355931573765 0.0 28 0.0 0.0 0.0 2.047617278676548 0.0 29 0.0 0.0 0.0 2.115102435037798 0.0 30 0.0 0.0 0.0 2.195124971365243 0.0 31 0.0 0.0 0.0 2.270349251162416 0.0 32 0.0 0.0 0.0 2.3378344075236663 0.0 33 0.0 0.0 0.0 2.405629128822353 0.0 34 0.0 0.0 0.0 2.480234278744652 0.0 35 0.0 0.0 0.0 2.5748063671316332 0.0 36 0.0 0.0 0.0 2.656067163208826 0.0 37 0.0 0.0 0.0 2.737173176817301 0.0 38 0.0 0.0 0.0 2.8289591807673498 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATATCG 30 2.5259887E-6 44.000004 1 TTCGTAA 30 2.5259887E-6 44.000004 18 CGTAAGT 30 2.5259887E-6 44.000004 20 AGTAGCG 60 0.0 44.000004 1 AATACGG 30 2.5259887E-6 44.000004 2 AACGTCG 20 7.853919E-4 44.0 1 AGCCGTA 20 7.853919E-4 44.0 12 CGAACAC 20 7.853919E-4 44.0 22 ACGCCTA 20 7.853919E-4 44.0 43 CAAGTCG 20 7.853919E-4 44.0 34 CGACGGA 20 7.853919E-4 44.0 28 TCCGATA 20 7.853919E-4 44.0 14 ACGTTCA 20 7.853919E-4 44.0 41 TTGTACG 25 4.4406694E-5 44.0 1 TAACGGA 20 7.853919E-4 44.0 3 GCGCACC 20 7.853919E-4 44.0 36 GACCCCG 35 1.4447687E-7 44.0 9 AATGCCG 25 4.4406694E-5 44.0 18 CTAACCG 20 7.853919E-4 44.0 17 CCGTACT 20 7.853919E-4 44.0 14 >>END_MODULE