##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545836_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2578860 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.749783625322817 31.0 31.0 33.0 30.0 34.0 2 32.16713470293075 33.0 31.0 34.0 30.0 34.0 3 32.16332100230334 34.0 31.0 34.0 30.0 34.0 4 35.83719821936825 37.0 35.0 37.0 35.0 37.0 5 35.81914954669893 37.0 35.0 37.0 35.0 37.0 6 35.86606329928728 37.0 35.0 37.0 35.0 37.0 7 36.123037311059925 37.0 35.0 37.0 35.0 37.0 8 36.0923908238524 37.0 35.0 37.0 35.0 37.0 9 37.90892991476854 39.0 39.0 39.0 35.0 39.0 10 37.649350100431974 39.0 37.0 39.0 35.0 39.0 11 37.288667860992845 39.0 37.0 39.0 35.0 39.0 12 35.88853291764578 37.0 35.0 39.0 33.0 39.0 13 35.45414330363029 35.0 35.0 39.0 32.0 39.0 14 36.22224161063416 36.0 35.0 41.0 32.0 41.0 15 36.5548261634986 36.0 35.0 41.0 33.0 41.0 16 36.7436960517438 36.0 35.0 41.0 33.0 41.0 17 36.70506813087954 36.0 35.0 41.0 33.0 41.0 18 36.66141667248319 36.0 35.0 40.0 33.0 41.0 19 36.580279270685494 36.0 35.0 40.0 32.0 41.0 20 36.34159473565839 36.0 35.0 40.0 32.0 41.0 21 36.18795630627486 35.0 35.0 40.0 32.0 41.0 22 36.160966473558084 35.0 35.0 40.0 32.0 41.0 23 36.19577526503959 35.0 35.0 40.0 32.0 41.0 24 36.158411468633425 35.0 35.0 40.0 32.0 41.0 25 36.06942214777072 35.0 35.0 40.0 32.0 41.0 26 35.94209960990515 35.0 35.0 40.0 32.0 41.0 27 35.829117129274174 35.0 35.0 40.0 32.0 41.0 28 35.872129933381416 36.0 35.0 40.0 32.0 41.0 29 35.90540471371071 36.0 35.0 40.0 32.0 41.0 30 35.82525185547102 36.0 35.0 40.0 32.0 41.0 31 35.57916792691344 35.0 35.0 40.0 31.0 41.0 32 35.3345059444871 35.0 35.0 40.0 31.0 41.0 33 35.16084936755 35.0 35.0 40.0 30.0 41.0 34 34.9664103518609 35.0 35.0 40.0 30.0 41.0 35 34.7175732688087 35.0 34.0 40.0 29.0 41.0 36 34.55430655405877 35.0 34.0 40.0 27.0 41.0 37 34.458265280007446 35.0 34.0 40.0 27.0 41.0 38 34.43235499406715 35.0 34.0 40.0 27.0 41.0 39 34.45751223408793 35.0 34.0 40.0 27.0 41.0 40 34.247997177047225 35.0 34.0 40.0 25.0 41.0 41 34.24809683348456 35.0 34.0 40.0 25.0 41.0 42 34.230543728624276 35.0 34.0 40.0 25.0 41.0 43 34.13009120308974 35.0 34.0 40.0 25.0 41.0 44 33.98719240284467 35.0 34.0 40.0 24.0 41.0 45 33.85283536136122 35.0 34.0 39.0 23.0 41.0 46 33.831059848149955 35.0 34.0 39.0 23.0 41.0 47 33.789247962277905 35.0 34.0 39.0 23.0 41.0 48 33.77414904260022 35.0 34.0 39.0 23.0 41.0 49 33.7880218391072 35.0 34.0 39.0 24.0 41.0 50 33.534116625175464 35.0 34.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 5.0 12 2.0 13 4.0 14 16.0 15 36.0 16 109.0 17 328.0 18 780.0 19 1744.0 20 3225.0 21 5315.0 22 8243.0 23 12671.0 24 18706.0 25 28274.0 26 40334.0 27 49741.0 28 51714.0 29 53342.0 30 59987.0 31 71373.0 32 90724.0 33 123663.0 34 268352.0 35 667416.0 36 130956.0 37 141506.0 38 226460.0 39 523832.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.070069720729315 24.057684403185903 30.776544674778776 15.095701201306003 2 30.57405210054055 26.31899366386698 29.761600086860085 13.345354148732385 3 25.524495319637357 24.522036869004133 34.99329160947085 14.960176201887657 4 24.285226805642804 26.808473511551618 33.81040459738024 15.095895085425342 5 22.25657848816919 31.852136215226885 32.47314704947147 13.418138247132456 6 20.572772465352905 37.83326741273276 29.758110172711973 11.83584994920236 7 84.79413384208526 5.0851926820378 8.10699301241634 2.0136804634605987 8 86.77737449880955 3.6835268296844346 7.531932714455225 2.00716595705079 9 83.82657453293315 4.771100408707723 8.966364982976973 2.4359600753821455 10 62.519524130817494 17.92156224067999 11.936126815724778 7.622786812777739 11 58.874890455472574 14.68427910006747 17.796429430058243 8.644401014401712 12 50.577735898807994 19.19751363005359 20.70100742188409 9.523743049254321 13 19.157302063702566 50.37338203702411 21.198591625757118 9.270724273516205 14 11.255205788604266 51.46460063749099 28.211147561325546 9.069046012579202 15 9.335636676671086 20.061887810893186 61.150702248280254 9.451773264155479 16 10.61023087720931 14.23442916637584 57.17933505502432 17.97600490139054 17 11.189285188028819 13.945890819974718 31.47514793358306 43.38967605841341 18 20.148980557300515 20.325104891308563 39.66838060228163 19.857533949109296 19 30.935645983108817 21.26703271988398 28.062515995439846 19.73480530156736 20 31.90735441241479 20.811211155316688 26.352845831103664 20.928588601164854 21 19.816857060871857 28.274741552468917 30.68759064082579 21.22081074583343 22 21.188470874727592 24.787968327090265 25.441241478792954 28.58231931938919 23 15.161505471409848 31.95140488432873 25.77200778638623 27.115081857875182 24 17.39524441032084 21.402169951063648 46.8153757862001 14.387209852415408 25 12.433711019597807 23.10451129568879 43.537570864645616 20.92420682006778 26 12.677656018550831 37.48346168462034 30.19372901204408 19.64515328478475 27 14.98185244642982 38.27737837649194 30.03067246767952 16.710096709398726 28 11.25532211907587 29.2300086084549 43.892689017627944 15.621980254841286 29 11.182072698789387 24.388101719364368 43.56770045679099 20.862125125055258 30 16.13302001659648 32.38206029020575 33.64769704443049 17.837222648767284 31 30.837385511427527 25.14316403372033 27.055016557703794 16.96443389714835 32 32.783400417238624 25.620041413647893 28.375095972639073 13.221462196474413 33 30.382998689343353 26.039606647898683 25.90935529652637 17.668039366231593 34 18.881327408234647 25.49498615667388 31.043910875348026 24.579775559743453 35 18.860038931931165 24.506797577224045 34.82914931403799 21.804014176806806 36 34.41792109691879 21.664456387706196 27.868515545628686 16.049106969746322 37 18.328447453525975 32.72321878659562 32.2725157627789 16.675817997099493 38 19.40590028151974 34.792195000891866 23.928247365114817 21.873657352473575 39 19.56034837098563 32.95277758389366 28.97206517608556 18.514808869035154 40 23.728469168547342 24.105728887958243 25.376910727996094 26.788891215498325 41 14.925470944525877 22.624027671141512 28.35380749633559 34.09669388799702 42 20.821176799050743 23.858022537090033 25.74591098392313 29.574889679936096 43 22.261503144800415 24.177543565761617 27.541975911837014 26.018977377600955 44 17.54426374444522 32.49823565451401 29.440372877938316 20.51712772310246 45 16.10498437293998 41.74972662339173 21.035612635040287 21.109676368628 46 22.422000418789697 34.38829560348371 25.495296371264825 17.69440760646177 47 22.349875526395387 27.124194411484144 27.213807651442885 23.312122410677585 48 23.76135191518733 22.15955887485168 33.00578550212109 21.073303707839898 49 22.133694733331783 21.33144102432858 35.77026282931218 20.76460141302746 50 18.20257788325074 35.748198816531335 25.60042034077073 20.4488029594472 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4361.0 1 4596.0 2 4831.0 3 16393.0 4 27955.0 5 20883.0 6 13811.0 7 14597.0 8 15383.0 9 16527.5 10 17672.0 11 17203.0 12 16734.0 13 15825.5 14 14917.0 15 14140.5 16 13364.0 17 12206.5 18 11049.0 19 10081.5 20 9114.0 21 8231.0 22 7348.0 23 8474.5 24 9601.0 25 11340.0 26 13079.0 27 12914.5 28 12750.0 29 17417.0 30 22084.0 31 22433.5 32 22783.0 33 30961.0 34 39139.0 35 42420.0 36 45701.0 37 53732.5 38 61764.0 39 104194.5 40 146625.0 41 206032.0 42 265439.0 43 320245.0 44 375051.0 45 375431.5 46 375812.0 47 319640.0 48 263468.0 49 231258.0 50 199048.0 51 186283.0 52 173518.0 53 147595.5 54 121673.0 55 107082.0 56 92491.0 57 77696.0 58 62901.0 59 54077.5 60 45254.0 61 39437.0 62 33620.0 63 26496.5 64 19373.0 65 14157.0 66 8941.0 67 6950.0 68 4959.0 69 3793.0 70 2627.0 71 2364.5 72 2102.0 73 1662.0 74 1222.0 75 975.0 76 728.0 77 520.5 78 313.0 79 222.5 80 132.0 81 92.0 82 52.0 83 46.5 84 41.0 85 28.0 86 15.0 87 14.0 88 13.0 89 6.5 90 0.0 91 0.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2578860.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 12.880280721427656 #Duplication Level Percentage of deduplicated Percentage of total 1 77.6254514521117 9.998376058307528 2 9.771136038780451 2.517099502935017 3 3.7373099770526648 1.4441280494229205 4 1.8855214596151932 0.9714418282447883 5 1.1191168892895655 0.720726984707024 6 0.7366021819380303 0.5692585730026775 7 0.5097955220387662 0.45964166040702475 8 0.3821824350294863 0.3938093639982857 9 0.2750963053627136 0.3188985874649402 >10 2.0751428585022365 5.411324057922443 >50 0.43928392963404583 4.079442879301705 >100 1.0476399977351445 35.199806078516694 >500 0.3743964981727608 32.891090111011586 >1k 0.020715184601910283 3.565033509394201 >5k 0.0 0.0 >10k+ 6.092701353503024E-4 1.4599227553631535 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 20969 0.8131112196862179 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16238 0.6296580659671327 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3561 0.13808426979362975 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06518384092195777 0.0 2 0.0 0.0 0.0 0.28466066401433193 0.0 3 0.0 0.0 0.0 0.40804851756202354 0.0 4 0.0 0.0 0.0 0.6301233878535477 0.0 5 0.0 0.0 0.0 1.061709437503393 0.0 6 0.0 0.0 0.0 1.4414508736418417 0.0 7 0.0 0.0 0.0 1.7044740699378795 0.0 8 0.0 0.0 0.0 2.296518616753139 0.0 9 0.0 0.0 0.0 2.5580295169183285 0.0 10 0.0 0.0 0.0 3.012997991360524 0.0 11 0.0 0.0 0.0 3.377771573485959 0.0 12 0.0 0.0 0.0 3.7315325376329076 0.0 13 0.0 0.0 0.0 3.884080562729268 0.0 14 0.0 0.0 0.0 3.9268513994555736 0.0 15 0.0 0.0 0.0 3.9952537167585676 0.0 16 0.0 0.0 0.0 4.175488394096616 0.0 17 0.0 0.0 0.0 4.3868608610005975 0.0 18 0.0 0.0 0.0 4.778661889361966 0.0 19 0.0 0.0 0.0 4.898986373824092 0.0 20 0.0 0.0 0.0 5.037807403271213 0.0 21 0.0 0.0 0.0 5.196559720186439 0.0 22 0.0 0.0 0.0 5.34612192984497 0.0 23 0.0 0.0 0.0 5.532056800291602 0.0 24 0.0 0.0 0.0 5.6546691173619354 0.0 25 0.0 0.0 0.0 5.752619374452277 0.0 26 0.0 0.0 0.0 5.863870082129313 0.0 27 0.0 0.0 0.0 5.967365425032766 0.0 28 0.0 0.0 0.0 6.083463235693291 0.0 29 0.0 0.0 0.0 6.1981650806945705 0.0 30 0.0 0.0 0.0 6.366572826752907 0.0 31 0.0 0.0 0.0 6.537462289538788 0.0 32 0.0 0.0 0.0 6.678920143008926 0.0 33 0.0 0.0 0.0 6.811536880637181 0.0 34 0.0 0.0 0.0 6.951637545271942 0.0 35 0.0 0.0 0.0 7.150640205362059 0.0 36 0.0 0.0 0.0 7.301171835617288 0.0 37 0.0 0.0 0.0 7.445964495940067 0.0 38 0.0 0.0 0.0 7.583893658438225 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTAG 65 0.0 44.000004 1 TTAATCG 30 2.5289464E-6 44.000004 20 CAAGTCG 30 2.5289464E-6 44.000004 1 CACGGAC 30 2.5289464E-6 44.000004 32 ACGTTCC 20 7.858305E-4 44.000004 34 CTATCGC 30 2.5289464E-6 44.000004 32 TAGCGAT 60 0.0 44.000004 18 GCTATCG 30 2.5289464E-6 44.000004 12 ATTACAC 20 7.858305E-4 44.000004 17 TGTATCG 65 0.0 44.000004 28 AAGCGTC 20 7.858305E-4 44.000004 21 GAATACG 30 2.5289464E-6 44.000004 1 CGACAAC 40 8.3200575E-9 44.000004 18 TATGCGT 30 2.5289464E-6 44.000004 20 GCGCATC 30 2.5289464E-6 44.000004 17 TTATCGG 145 0.0 44.000004 2 TCGATAT 30 2.5289464E-6 44.000004 16 CCGTCGA 20 7.858305E-4 44.000004 27 AATGCGC 30 2.5289464E-6 44.000004 14 TCAATCG 40 8.3200575E-9 44.000004 18 >>END_MODULE