##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545834_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2184139 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.694471826197876 31.0 31.0 33.0 30.0 34.0 2 32.11829787389905 33.0 31.0 34.0 30.0 34.0 3 32.19555623520298 33.0 31.0 34.0 30.0 34.0 4 35.87588930924268 37.0 35.0 37.0 35.0 37.0 5 35.8542835414779 37.0 35.0 37.0 35.0 37.0 6 35.903591300736814 37.0 35.0 37.0 35.0 37.0 7 36.079422600850954 37.0 35.0 37.0 35.0 37.0 8 36.031505778707306 37.0 35.0 37.0 35.0 37.0 9 37.790808185742755 39.0 38.0 39.0 35.0 39.0 10 37.562208266049 39.0 37.0 39.0 35.0 39.0 11 37.29406141275807 39.0 37.0 39.0 34.0 39.0 12 36.41803520746619 38.0 35.0 39.0 33.0 39.0 13 36.114443265744534 38.0 35.0 39.0 33.0 39.0 14 37.077603119581674 39.0 35.0 41.0 33.0 41.0 15 37.29144482104848 39.0 35.0 41.0 33.0 41.0 16 37.39094398296079 39.0 35.0 41.0 33.0 41.0 17 37.316624079328285 39.0 35.0 41.0 33.0 41.0 18 37.27913470708595 39.0 35.0 41.0 33.0 41.0 19 37.2026501060601 38.0 35.0 41.0 33.0 41.0 20 37.02928293483153 38.0 35.0 41.0 33.0 41.0 21 36.90702697951 38.0 35.0 41.0 33.0 41.0 22 36.897178705201455 38.0 35.0 41.0 33.0 41.0 23 36.899937229269746 38.0 35.0 41.0 33.0 41.0 24 36.86017510790293 38.0 35.0 41.0 33.0 41.0 25 36.75314574759207 38.0 35.0 41.0 32.0 41.0 26 36.647911602695615 38.0 35.0 41.0 32.0 41.0 27 36.55942135550897 38.0 35.0 41.0 32.0 41.0 28 36.525075556088694 38.0 35.0 41.0 32.0 41.0 29 36.517917586747 38.0 35.0 41.0 32.0 41.0 30 36.43801516295437 37.0 35.0 40.0 32.0 41.0 31 36.279506020450164 37.0 35.0 40.0 31.0 41.0 32 36.10343251963359 37.0 35.0 41.0 31.0 41.0 33 35.95202182644969 37.0 35.0 41.0 30.0 41.0 34 35.81523382898249 37.0 35.0 40.0 30.0 41.0 35 35.63104774925039 37.0 35.0 40.0 30.0 41.0 36 35.47482646479917 37.0 35.0 40.0 29.0 41.0 37 35.36632604426733 37.0 35.0 40.0 29.0 41.0 38 35.300949252771915 37.0 34.0 40.0 29.0 41.0 39 35.28320999716593 37.0 35.0 40.0 28.0 41.0 40 35.13034655761378 36.0 34.0 40.0 27.0 41.0 41 35.05600559305063 36.0 34.0 40.0 27.0 41.0 42 35.03189540592426 36.0 34.0 40.0 27.0 41.0 43 34.96571921475694 36.0 34.0 40.0 27.0 41.0 44 34.80888121131485 36.0 34.0 40.0 27.0 41.0 45 34.734378627001306 36.0 34.0 40.0 26.0 41.0 46 34.704490419336864 35.0 34.0 40.0 26.0 41.0 47 34.64916930653223 35.0 34.0 40.0 26.0 41.0 48 34.59618137856611 35.0 34.0 40.0 26.0 41.0 49 34.53629874289136 36.0 34.0 40.0 26.0 41.0 50 34.34990721744358 35.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 5.0 11 7.0 12 10.0 13 10.0 14 38.0 15 57.0 16 136.0 17 295.0 18 724.0 19 1435.0 20 2586.0 21 4341.0 22 6552.0 23 9680.0 24 13905.0 25 20143.0 26 28721.0 27 36380.0 28 39290.0 29 41411.0 30 46384.0 31 55006.0 32 68569.0 33 92320.0 34 188126.0 35 396164.0 36 121741.0 37 155297.0 38 262613.0 39 592192.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.677407436065195 23.597582388300378 29.288108494926373 14.43690168070805 2 31.40312956272472 26.029662031583157 29.292458034951075 13.274750370741057 3 30.02945325366197 23.845002538757836 32.75185324743526 13.373690960144934 4 26.516993652876486 26.585533246739335 31.742347900019187 15.155125200364994 5 22.991714355176114 32.37820486699793 30.130728859289636 14.499351918536322 6 21.31979695431472 40.786781427372524 27.49637271254256 10.397048905770191 7 85.62298461773725 5.197746114143834 7.235162230975227 1.9441070371436984 8 87.54571023181217 3.7024658229169485 7.11131480185098 1.6405091434199013 9 82.42176894419265 6.002823080399187 8.603756445903855 2.9716515295043036 10 51.806592895415534 23.92283641288398 14.203262704434106 10.067307987266378 11 46.6394309153401 19.654335186542614 21.205243805453776 12.500990092663516 12 42.420651799175786 20.51032466340283 24.22876932283156 12.840254214589821 13 21.28843448150507 39.82676926697431 24.415066989784076 14.469729261736546 14 15.059481104453518 41.13250118238811 29.327208570516806 14.480809142641563 15 15.21569826828787 22.471738291381637 48.21249929606128 14.100064144269206 16 16.873605571806557 17.953024052040647 46.09834813626789 19.075022239884916 17 16.471479150365433 18.92741258683628 30.40387997284056 34.197228289957735 18 21.723754761029404 23.040795480507423 34.88376884438216 20.35168091408102 19 29.1185680032269 23.83058037972858 27.14149603115919 19.90935558588533 20 30.611696416757354 22.77167341455832 26.122467480320623 20.494162688363698 21 22.611152495331112 27.048186951471497 28.85997640260075 21.480684150596645 22 22.102210527809817 25.116029703237754 26.743032380265173 26.03872738868726 23 19.632083855468903 29.162612819055926 26.84385013957445 24.361453185900714 24 19.528747941408493 22.962595329326568 40.02419259946368 17.484464129801264 25 17.01471380713407 25.427639907533354 36.36265823741071 21.19498804792186 26 16.72558385707137 33.089057060928816 28.578629839950665 21.606729242049155 27 18.216697746800914 32.979952283256694 30.1372760616426 18.666073908299794 28 15.14871535190755 27.998080708233314 39.271767959823066 17.58143598003607 29 16.490708695737773 24.425185393420474 37.32399815213226 21.760107758709495 30 18.765655482549416 30.02221928183142 31.899984387440544 19.31214084817862 31 28.418429413146324 27.09790906164855 25.913781128398877 18.569880396806244 32 29.494093553569623 26.002465960270843 27.132796951109796 17.370643535049737 33 26.51278146674731 28.381984846202553 26.029341539160285 19.075892147889856 34 18.9281451409457 27.607583583279272 30.111590883180973 23.35268039259406 35 20.682474879117127 25.25274261390873 31.977223061352777 22.087559445621363 36 28.763920245002723 25.84615722717281 26.17832473116409 19.211597796660378 37 20.551347693530495 33.11762667119629 28.344212524935454 17.986813110337756 38 20.479740529334443 33.354882633385515 24.239849203736576 21.92552763354347 39 21.46484266798038 31.769086125013107 26.955198364206673 19.81087284279984 40 23.770831435178806 27.020304110681597 25.399619712847947 23.80924474129165 41 17.457817474071017 25.97682656644106 26.789045935263278 29.77631002422465 42 21.577518646935932 26.698209225694885 24.622013525695937 27.102258601673245 43 22.442115634581867 26.269069871468805 25.596264706596056 25.692549787353276 44 19.026215822344643 30.968404483414286 28.459544012537663 21.54583568170341 45 17.885125443023544 36.81702492378003 23.240965890907127 22.056883742289298 46 21.200253280583333 33.13172833780268 26.154928784294405 19.513089597319585 47 22.05921875851308 28.09042831065239 27.3647418960057 22.48561103482883 48 22.757205470897226 24.53429017109259 31.224203221498264 21.484301136511917 49 20.984195602935525 25.467106260178497 31.831765286000568 21.716932850885406 50 19.33791759590392 32.79228107734902 27.643432950009135 20.226368376737927 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1267.0 1 2973.0 2 4679.0 3 13813.5 4 22948.0 5 16813.5 6 10679.0 7 10412.0 8 10145.0 9 10022.0 10 9899.0 11 9657.0 12 9415.0 13 8923.0 14 8431.0 15 8195.5 16 7960.0 17 7038.0 18 6116.0 19 6138.5 20 6161.0 21 6518.5 22 6876.0 23 8075.0 24 9274.0 25 11350.5 26 13427.0 27 19323.0 28 25219.0 29 29861.0 30 34503.0 31 37647.5 32 40792.0 33 44282.0 34 47772.0 35 54914.0 36 62056.0 37 66342.5 38 70629.0 39 88101.5 40 105574.0 41 138079.0 42 170584.0 43 200396.0 44 230208.0 45 231310.0 46 232412.0 47 215208.5 48 198005.0 49 185641.0 50 173277.0 51 163729.5 52 154182.0 53 142070.5 54 129959.0 55 114703.5 56 99448.0 57 90612.5 58 81777.0 59 72737.5 60 63698.0 61 57502.5 62 51307.0 63 42991.5 64 34676.0 65 27925.0 66 21174.0 67 15870.0 68 10566.0 69 9167.5 70 7769.0 71 6107.5 72 4446.0 73 3640.5 74 2835.0 75 2364.5 76 1894.0 77 1550.0 78 1206.0 79 805.5 80 405.0 81 309.0 82 213.0 83 177.5 84 142.0 85 108.5 86 75.0 87 46.0 88 17.0 89 20.0 90 23.0 91 18.0 92 13.0 93 8.0 94 3.0 95 2.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2184139.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.904196539313162 #Duplication Level Percentage of deduplicated Percentage of total 1 80.34610112732892 11.171479812419124 2 7.452882989762443 2.072526997483218 3 2.370021130580939 0.9885971880576766 4 1.1627777047056738 0.6466995895103652 5 0.6793744461415021 0.4723077911469235 6 0.48220630557995503 0.4022814747167878 7 0.3805420751907127 0.370379226345083 8 0.33583366380940183 0.37355978128988365 9 0.2695992873358799 0.33737053301791525 >10 3.400249736622317 11.479099017317782 >50 1.1206432047680073 11.181681658899146 >100 1.9721186911197495 56.70221666033761 >500 0.02431835548171283 2.087541714009981 >1k 0.002665025258269899 0.8208153434505063 >5k 3.331281572837374E-4 0.37860981983886 >10k+ 3.331281572837374E-4 0.5148333921591545 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11115 0.5088961828894589 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 8174 0.3742435806512315 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 4010 0.18359637367401982 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 3323 0.15214233160069027 No Hit GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 2733 0.1251293988157347 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.019550037795213582 0.0 2 0.0 0.0 0.0 0.06881430165387825 0.0 3 0.0 0.0 0.0 0.09614772686170614 0.0 4 0.0 0.0 0.0 0.14806749936702746 0.0 5 0.0 0.0 0.0 0.26349055623291373 0.0 6 0.0 0.0 0.0 0.38101970616338976 0.0 7 0.0 0.0 0.0 0.47226847741833283 0.0 8 0.0 0.0 0.0 0.7215200131493462 0.0 9 0.0 0.0 0.0 0.8249932811052776 0.0 10 0.0 0.0 0.0 0.9854226310688102 0.0 11 0.0 0.0 0.0 1.1018529498351524 0.0 12 0.0 0.0 0.0 1.2261124406459478 0.0 13 0.0 0.0 0.0 1.2690126406790043 0.0 14 0.0 0.0 0.0 1.2829769533898712 0.0 15 0.0 0.0 0.0 1.30733437752817 0.0 16 0.0 0.0 0.0 1.36140602772992 0.0 17 4.5784631838907686E-5 0.0 0.0 1.4304950371748317 0.0 18 4.5784631838907686E-5 0.0 0.0 1.5461928018317515 0.0 19 4.5784631838907686E-5 0.0 0.0 1.588131524596191 0.0 20 4.5784631838907686E-5 0.0 0.0 1.635701757076816 0.0 21 4.5784631838907686E-5 0.0 0.0 1.6987471951189919 0.0 22 4.5784631838907686E-5 0.0 0.0 1.7695302359419434 0.0 23 4.5784631838907686E-5 0.0 0.0 1.8513473730380714 0.0 24 4.5784631838907686E-5 0.0 0.0 1.9079371779909613 0.0 25 4.5784631838907686E-5 0.0 0.0 1.9593075349142157 0.0 26 4.5784631838907686E-5 0.0 0.0 2.0094417067778196 0.0 27 4.5784631838907686E-5 0.0 0.0 2.061773540969691 0.0 28 4.5784631838907686E-5 0.0 0.0 2.1164403913853467 0.0 29 4.5784631838907686E-5 0.0 0.0 2.175227858666504 0.0 30 4.5784631838907686E-5 0.0 0.0 2.252695455737936 0.0 31 4.5784631838907686E-5 0.0 0.0 2.328514806063167 0.0 32 4.5784631838907686E-5 0.0 0.0 2.4011292321596747 0.0 33 4.5784631838907686E-5 0.0 0.0 2.472827965619404 0.0 34 4.5784631838907686E-5 0.0 0.0 2.545717099506945 0.0 35 4.5784631838907686E-5 0.0 0.0 2.643101011428302 0.0 36 4.5784631838907686E-5 0.0 0.0 2.7300918119222266 0.0 37 4.5784631838907686E-5 0.0 0.0 2.8136029803963942 0.0 38 4.5784631838907686E-5 0.0 0.0 2.897526210557112 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGTA 55 1.8189894E-12 44.000004 43 CGACGTA 20 7.858039E-4 44.000004 42 CGCATAG 20 7.858039E-4 44.000004 14 CGACATA 40 8.3182385E-9 44.000004 40 ATATGCG 110 0.0 44.000004 1 ATCACGC 20 7.858039E-4 44.000004 8 ATATCCG 40 8.3182385E-9 44.000004 29 AACATCG 20 7.858039E-4 44.000004 34 CTACGAT 20 7.858039E-4 44.000004 41 ACTACGG 80 0.0 44.000004 2 CACCGTT 20 7.858039E-4 44.000004 24 CAATACG 75 0.0 44.000004 1 TAATGCG 55 1.8189894E-12 44.000004 1 GCCCGTT 20 7.858039E-4 44.000004 33 GCGTAAG 95 0.0 44.000004 1 AACGTAT 30 2.5287682E-6 44.0 15 ACGTTAG 85 0.0 44.0 1 TAGCCGA 25 4.44416E-5 44.0 1 CGCTATA 25 4.44416E-5 44.0 39 CGCTAAT 35 1.4468787E-7 44.0 27 >>END_MODULE