##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545833_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3869736 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.74289874037919 31.0 31.0 33.0 30.0 34.0 2 32.17390230237928 33.0 31.0 34.0 30.0 34.0 3 32.23571633827217 34.0 31.0 34.0 30.0 34.0 4 35.91432102861797 37.0 35.0 37.0 35.0 37.0 5 35.90214345371364 37.0 35.0 37.0 35.0 37.0 6 35.956106308027216 37.0 35.0 37.0 35.0 37.0 7 36.119531151479066 37.0 35.0 37.0 35.0 37.0 8 36.05509238873143 37.0 35.0 37.0 35.0 37.0 9 37.80611338861359 39.0 38.0 39.0 35.0 39.0 10 37.59322212161243 39.0 37.0 39.0 35.0 39.0 11 37.352558675837315 39.0 37.0 39.0 35.0 39.0 12 36.56295028911533 38.0 35.0 39.0 33.0 39.0 13 36.3154504596696 38.0 35.0 39.0 33.0 39.0 14 37.325851427590926 39.0 35.0 41.0 33.0 41.0 15 37.492944996764635 39.0 35.0 41.0 33.0 41.0 16 37.56891503709814 39.0 35.0 41.0 33.0 41.0 17 37.50988465363012 39.0 35.0 41.0 33.0 41.0 18 37.45726168400118 39.0 35.0 41.0 33.0 41.0 19 37.37679211191668 39.0 35.0 41.0 33.0 41.0 20 37.2074924490973 38.0 35.0 41.0 33.0 41.0 21 37.101053922024654 38.0 35.0 41.0 33.0 41.0 22 37.091132831800415 38.0 35.0 41.0 33.0 41.0 23 37.09162046196433 38.0 35.0 41.0 33.0 41.0 24 37.060162502041486 38.0 35.0 41.0 33.0 41.0 25 36.96541185238476 38.0 35.0 41.0 33.0 41.0 26 36.87115348437206 38.0 35.0 41.0 33.0 41.0 27 36.7666114691028 38.0 35.0 41.0 32.0 41.0 28 36.7597696587054 38.0 35.0 41.0 32.0 41.0 29 36.73259700403335 38.0 35.0 41.0 32.0 41.0 30 36.64826463614055 38.0 35.0 41.0 32.0 41.0 31 36.49524618733681 38.0 35.0 41.0 32.0 41.0 32 36.32169429645847 38.0 35.0 41.0 31.0 41.0 33 36.16585756754466 38.0 35.0 41.0 31.0 41.0 34 36.00119982345049 38.0 35.0 41.0 30.0 41.0 35 35.807134646911315 38.0 35.0 41.0 30.0 41.0 36 35.64493650212831 38.0 35.0 40.0 29.0 41.0 37 35.568870072790496 38.0 35.0 40.0 29.0 41.0 38 35.505930895544296 38.0 35.0 40.0 29.0 41.0 39 35.479381280790214 37.0 35.0 40.0 29.0 41.0 40 35.30031583549886 37.0 35.0 40.0 27.0 41.0 41 35.234914474785874 37.0 34.0 40.0 28.0 41.0 42 35.22683795483723 37.0 35.0 40.0 27.0 41.0 43 35.16380393908008 37.0 35.0 40.0 27.0 41.0 44 35.051471986719505 37.0 34.0 40.0 27.0 41.0 45 34.944954642900704 36.0 34.0 40.0 27.0 41.0 46 34.916661498355445 36.0 34.0 40.0 27.0 41.0 47 34.876071907747715 36.0 34.0 40.0 27.0 41.0 48 34.808507608787785 36.0 34.0 40.0 27.0 41.0 49 34.746497952315096 36.0 34.0 40.0 26.0 41.0 50 34.585845132587856 36.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 5.0 11 12.0 12 10.0 13 23.0 14 40.0 15 95.0 16 196.0 17 471.0 18 1181.0 19 2467.0 20 4248.0 21 6714.0 22 10675.0 23 15146.0 24 22454.0 25 33808.0 26 49505.0 27 61910.0 28 66762.0 29 69715.0 30 78134.0 31 92180.0 32 115988.0 33 156222.0 34 315907.0 35 663463.0 36 217308.0 37 279348.0 38 476734.0 39 1129014.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.79217600373772 23.98822555337108 28.371341094069468 13.848257348821729 2 31.86527453035556 26.157210724452522 28.863416005639664 13.11409873955226 3 29.959511449876686 24.029727092494166 32.87374125780156 13.137020199827584 4 26.21866194489753 27.437323889795067 31.597090860978632 14.74692330432877 5 23.01012265436195 32.47017367593035 30.13360601343347 14.386097656274227 6 20.9255876886692 40.92501400612342 27.69095876307841 10.458439542128971 7 85.27610152217102 5.180379230004321 7.647963582011796 1.8955556658128616 8 86.38062131370202 4.1878309011260715 7.489012170339268 1.9425356148326398 9 81.6509446639254 6.103207040480281 9.032993465187289 3.2128548304070352 10 48.91023573701151 25.345734179282513 14.956291591984568 10.787738491721399 11 44.04269438535342 20.754335696285224 21.914854139920656 13.288115778440702 12 39.81974480946504 21.975168331896544 25.35532139660173 12.849765462036686 13 22.040728359764078 38.16464482331611 25.096311479646154 14.698315337273653 14 15.911343822937793 39.251282258014506 28.98856666191182 15.848807257135888 15 15.704585532449759 23.098862558065978 46.71318663598757 14.483365273496693 16 17.107988762024075 19.286974615322595 44.3571861232911 19.24785049936223 17 17.68862268640548 20.019789463674005 29.77575214433233 32.51583570558819 18 21.81035088698557 23.467208098950422 34.957268402805774 19.765172611258237 19 28.835972273043947 23.67458658678525 26.963208859725828 20.52623228044497 20 29.094646249770012 23.215718074824743 27.17490288743211 20.514732787973134 21 21.974031303427417 27.834637815086094 29.598582435597677 20.592748445888816 22 22.29717996266412 24.602686074708974 27.363442880858024 25.736691081768885 23 19.525983167844007 29.350710229328303 27.427814197144194 23.69549240568349 24 19.303797468354432 23.530752485440868 39.45796302383419 17.70748702237052 25 17.96218139945464 26.020095427698426 35.078439459436 20.93928371341094 26 17.550111945621097 32.51480204334353 28.925745838992633 21.009340172042744 27 17.906260272018557 32.84720197966993 29.944239090211838 19.302298658099673 28 15.36006590630472 28.29916562783611 37.475088739903704 18.865679725955466 29 16.68762416867714 25.210298583675993 36.24223978069821 21.85983746694865 30 18.20372242447547 30.47440445549774 32.25023619182291 19.07163692820389 31 27.68183669376929 26.908941591881202 26.645977916839804 18.763243797509702 32 28.02428899542501 26.0750604175582 28.405710363704394 17.49494022331239 33 26.777614803697205 27.514486776358904 26.487336603840678 19.220561816103217 34 19.77550923370483 27.232865497801402 29.45733248986494 23.534292778628828 35 21.352231780152444 26.00577920560989 31.366454972638962 21.275534041598704 36 28.38441692146441 27.31700560451669 25.9946673364798 18.3039101375391 37 20.123336579032784 33.84031882278274 27.864743227961803 18.17160137022267 38 20.263036031398524 33.341318374173326 25.35834485866736 21.037300735760788 39 20.917964429614837 31.65864544764811 27.660181469743673 19.763208652993384 40 23.698567550861352 26.71714556238462 26.512997269064346 23.071289617689683 41 16.90670888143274 26.726086740800923 28.09276911913371 28.27443525863263 42 21.344841095103128 26.13142085144826 26.135322926421857 26.388415127026754 43 21.773888451305208 26.98016092053825 26.751540673575665 24.49440995458088 44 19.088072157893976 30.920688129629514 28.175410415594243 21.81582929688227 45 17.43736523628485 36.88711581358521 23.807954857902452 21.86756409222748 46 20.33322169781091 34.56432170049843 26.500722529909016 18.601734071781642 47 22.010131957322155 27.95965926357767 27.826446041797166 22.20376273730301 48 22.34341050655652 25.322037472323693 31.647275162956852 20.687276858162935 49 20.512226157029833 25.85920589931716 32.61139778010696 21.01717016354604 50 19.13412181089356 32.910255376594165 27.973122714314364 19.982500098197914 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2166.0 1 5978.0 2 9790.0 3 27504.5 4 45219.0 5 32617.0 6 20015.0 7 19745.5 8 19476.0 9 19163.0 10 18850.0 11 18160.0 12 17470.0 13 16119.0 14 14768.0 15 14089.5 16 13411.0 17 12293.0 18 11175.0 19 11897.5 20 12620.0 21 12659.5 22 12699.0 23 13279.5 24 13860.0 25 22079.5 26 30299.0 27 38323.5 28 46348.0 29 57355.0 30 68362.0 31 76073.0 32 83784.0 33 89543.0 34 95302.0 35 104767.0 36 114232.0 37 120609.5 38 126987.0 39 161434.5 40 195882.0 41 255950.5 42 316019.0 43 361321.0 44 406623.0 45 405467.0 46 404311.0 47 365268.5 48 326226.0 49 307302.5 50 288379.0 51 273476.0 52 258573.0 53 242258.0 54 225943.0 55 205896.5 56 185850.0 57 163107.5 58 140365.0 59 133843.0 60 127321.0 61 108348.0 62 89375.0 63 71213.0 64 53051.0 65 42132.5 66 31214.0 67 23996.0 68 16778.0 69 13830.0 70 10882.0 71 8738.0 72 6594.0 73 5222.5 74 3851.0 75 3352.0 76 2853.0 77 2167.0 78 1481.0 79 1121.0 80 761.0 81 529.0 82 297.0 83 212.5 84 128.0 85 99.0 86 70.0 87 54.5 88 39.0 89 26.0 90 13.0 91 12.0 92 11.0 93 9.5 94 8.0 95 6.0 96 4.0 97 2.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3869736.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 12.27103381196416 #Duplication Level Percentage of deduplicated Percentage of total 1 79.96043439479237 9.811971940778392 2 8.632816226148837 2.118671596070904 3 2.8482121709941275 1.0485152356175036 4 1.3968179697829564 0.6856160214546316 5 0.7564887755580549 0.464144967162213 6 0.5405236888091445 0.3979670676926763 7 0.3802090409590713 0.32658905980562614 8 0.27677249069705756 0.2717027673252103 9 0.2171041545447897 0.2397683179023306 >10 2.3180633954621204 6.5917911655661605 >50 0.7921363012898334 7.009027573872998 >100 1.6297553814428902 50.08750982569927 >500 0.23830323013772445 17.571936337662304 >1k 0.01129702253783488 1.9084635300104937 >5k 6.394541059151818E-4 0.5258638973598434 >10k+ 4.263027372767879E-4 0.9404606960194245 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22747 0.587817876981789 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 13209 0.3413411147427111 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 8490 0.2193948114289967 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 6299 0.162775961977768 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA 5316 0.13737371231525872 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 4473 0.11558928050905799 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.028218979279206642 0.0 2 0.0 0.0 0.0 0.11269502622401115 0.0 3 0.0 0.0 0.0 0.15688408718320837 0.0 4 0.0 0.0 0.0 0.22267668905579088 0.0 5 0.0 0.0 0.0 0.3791214697850189 0.0 6 0.0 0.0 0.0 0.5064428167709631 0.0 7 0.0 0.0 0.0 0.6043564728963423 0.0 8 0.0 0.0 0.0 0.8262579152686385 0.0 9 0.0 0.0 0.0 0.9200369224153793 0.0 10 0.0 0.0 0.0 1.105811869336823 0.0 11 0.0 0.0 0.0 1.2519717107316881 0.0 12 0.0 0.0 0.0 1.4018010530950948 0.0 13 0.0 0.0 0.0 1.4560941624958395 0.0 14 0.0 0.0 0.0 1.4737439453234018 0.0 15 0.0 0.0 0.0 1.5093019265396916 0.0 16 0.0 0.0 0.0 1.5867749117769274 0.0 17 0.0 0.0 0.0 1.6817684720611432 0.0 18 0.0 0.0 0.0 1.830383261287075 0.0 19 0.0 0.0 0.0 1.8854516173713143 0.0 20 0.0 0.0 0.0 1.9480657078415686 0.0 21 0.0 0.0 0.0 2.031637300322296 0.0 22 0.0 0.0 0.0 2.1180256224197205 0.0 23 0.0 0.0 0.0 2.22071996642665 0.0 24 0.0 0.0 0.0 2.298012060771071 0.0 25 0.0 0.0 0.0 2.3638563457558863 0.0 26 0.0 0.0 0.0 2.4299848878579833 0.0 27 5.16831122329792E-5 0.0 0.0 2.4947696690420225 0.0 28 5.16831122329792E-5 0.0 0.0 2.5620610811693614 0.0 29 5.16831122329792E-5 0.0 0.0 2.633538825387572 0.0 30 5.16831122329792E-5 0.0 0.0 2.7260515962846044 0.0 31 5.16831122329792E-5 0.0 0.0 2.822027135701247 0.0 32 5.16831122329792E-5 0.0 0.0 2.9063481333093524 0.0 33 5.16831122329792E-5 0.0 0.0 2.9874389364028966 0.0 34 5.16831122329792E-5 0.0 0.0 3.0745766636277 0.0 35 5.16831122329792E-5 0.0 0.0 3.189907528575593 0.0 36 5.16831122329792E-5 0.0 0.0 3.2879503924815543 0.0 37 5.16831122329792E-5 0.0 0.0 3.3856573161580017 0.0 38 5.16831122329792E-5 0.0 0.0 3.480366619324936 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTATCG 20 7.858793E-4 44.000004 1 ACTCTCG 20 7.858793E-4 44.000004 26 CTACGAT 20 7.858793E-4 44.000004 23 TACGTCC 40 8.3218765E-9 44.000004 35 CGAACGT 35 1.4472789E-7 44.0 38 CGAACGA 25 4.444801E-5 44.0 22 GTCGAAC 30 2.5292775E-6 44.0 21 GGTCGAA 55 1.8189894E-12 44.0 8 TATGCGC 50 2.7284841E-11 44.0 20 AATGCGC 60 0.0 44.0 33 TCGAACA 50 2.7284841E-11 44.0 37 GTTATGC 30 2.5292775E-6 44.0 20 TAATGCG 105 0.0 43.999996 1 CGCTTAC 45 4.802132E-10 43.999996 18 TTATACG 135 0.0 42.37037 1 TAGTGCG 285 0.0 41.684208 1 TCGAATA 85 0.0 41.411766 19 ACATACG 1225 0.0 41.30612 17 GCTACGA 630 0.0 41.20635 10 CATACGA 1225 0.0 41.12653 18 >>END_MODULE