##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545831_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 169125 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.68062084257206 31.0 31.0 33.0 30.0 34.0 2 32.10570288248337 33.0 31.0 34.0 30.0 34.0 3 32.176946045824096 33.0 31.0 34.0 30.0 34.0 4 35.871071692535104 37.0 35.0 37.0 35.0 37.0 5 35.84269031781227 37.0 35.0 37.0 35.0 37.0 6 35.888768662232074 37.0 35.0 37.0 35.0 37.0 7 36.07969253510717 37.0 35.0 37.0 35.0 37.0 8 36.02877753141168 37.0 35.0 37.0 35.0 37.0 9 37.78287657058389 39.0 38.0 39.0 35.0 39.0 10 37.54615816703622 39.0 37.0 39.0 35.0 39.0 11 37.25772062084257 39.0 37.0 39.0 34.0 39.0 12 36.394039911308205 38.0 35.0 39.0 33.0 39.0 13 36.116541019955655 38.0 35.0 39.0 33.0 39.0 14 37.048656319290465 39.0 35.0 41.0 33.0 41.0 15 37.27569549150037 39.0 35.0 41.0 33.0 41.0 16 37.38169401330377 39.0 35.0 41.0 33.0 41.0 17 37.332747967479676 39.0 35.0 41.0 33.0 41.0 18 37.26141611234294 38.0 35.0 41.0 33.0 41.0 19 37.1880206947524 38.0 35.0 41.0 33.0 41.0 20 37.02368662232077 38.0 35.0 41.0 33.0 41.0 21 36.906134515890614 38.0 35.0 41.0 33.0 41.0 22 36.89759645232816 38.0 35.0 41.0 32.0 41.0 23 36.88966740576497 38.0 35.0 41.0 33.0 41.0 24 36.8570051736881 38.0 35.0 41.0 33.0 41.0 25 36.74115003695491 38.0 35.0 41.0 32.0 41.0 26 36.64176201034738 38.0 35.0 41.0 32.0 41.0 27 36.54277014042868 38.0 35.0 41.0 32.0 41.0 28 36.53163045084996 38.0 35.0 41.0 32.0 41.0 29 36.49579896526238 38.0 35.0 41.0 32.0 41.0 30 36.42708647450111 38.0 35.0 41.0 31.0 41.0 31 36.25439172209904 38.0 35.0 40.0 31.0 41.0 32 36.089614190687364 38.0 35.0 41.0 31.0 41.0 33 35.9209756097561 38.0 35.0 40.0 30.0 41.0 34 35.75761714708056 37.0 35.0 40.0 30.0 41.0 35 35.55168070953437 37.0 35.0 40.0 29.0 41.0 36 35.41937620103474 37.0 35.0 40.0 29.0 41.0 37 35.3319911308204 37.0 35.0 40.0 29.0 41.0 38 35.240023651145606 37.0 34.0 40.0 28.0 41.0 39 35.20238876570584 37.0 34.0 40.0 27.0 41.0 40 35.019725055432374 36.0 34.0 40.0 27.0 41.0 41 34.95343680709534 36.0 34.0 40.0 26.0 41.0 42 34.95995269770879 36.0 34.0 40.0 27.0 41.0 43 34.895432372505546 36.0 34.0 40.0 27.0 41.0 44 34.78930376940133 36.0 34.0 40.0 26.0 41.0 45 34.69073170731707 36.0 34.0 40.0 26.0 41.0 46 34.65311456023651 35.0 34.0 40.0 26.0 41.0 47 34.59354323725056 35.0 34.0 40.0 26.0 41.0 48 34.507429416112345 35.0 34.0 40.0 26.0 41.0 49 34.44760975609756 36.0 34.0 40.0 26.0 41.0 50 34.29517812269032 35.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 4.0 14 0.0 15 4.0 16 19.0 17 27.0 18 61.0 19 131.0 20 226.0 21 330.0 22 507.0 23 749.0 24 1082.0 25 1667.0 26 2307.0 27 2812.0 28 3139.0 29 3151.0 30 3632.0 31 4290.0 32 5383.0 33 7189.0 34 14635.0 35 29951.0 36 9718.0 37 12418.0 38 20585.0 39 45106.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.20990391722099 24.493126385809312 29.858980044345895 13.4379896526238 2 31.679526977087953 25.41552106430155 29.7490022172949 13.155949741315595 3 28.8549889135255 24.5439763488544 33.420842572062085 13.180192165558019 4 27.095343680709533 26.56082779009608 31.66060606060606 14.683222468588323 5 22.598078344419807 32.51441241685144 30.513525498891354 14.373983739837398 6 21.09090909090909 41.20739098300074 27.44242424242424 10.259275683665928 7 86.47745750184774 4.490169992609017 7.000147819660015 2.0322246858832225 8 87.82143385070215 3.493865484109387 6.8753880266075384 1.8093126385809313 9 83.43532889874353 5.0838137472283815 8.458832224685883 3.0220251293422025 10 52.52564671101256 23.963340724316335 13.628972653362897 9.882039911308203 11 46.26991869918699 19.253215077605322 21.75609756097561 12.720768662232077 12 41.2339985218034 21.42439024390244 23.99940872135994 13.34220251293422 13 22.724611973392463 37.86962305986697 23.94560236511456 15.460162601626015 14 14.799113082039911 40.137176644493714 29.189061345158905 15.874648928307463 15 15.037989652623798 23.010199556541018 47.64464153732446 14.307169253510718 16 17.595861049519588 17.909830007390983 45.369992609017004 19.12431633407243 17 17.728898743532888 18.44079822616408 29.64671101256467 34.183592017738356 18 22.08189209164819 23.028529194382852 33.620694752402066 21.26888396156689 19 30.165853658536584 23.51160384331116 26.35210643015521 19.970436067997042 20 30.491056910569103 23.46430155210643 25.614190687361422 20.430450849963044 21 22.906134515890614 26.82690317812269 28.790539541759053 21.476422764227642 22 22.656023651145603 24.015964523281596 27.107760532150778 26.220251293422024 23 20.01241685144124 29.096230598669624 27.321212121212124 23.570140428677014 24 19.885291943828527 23.716186252771617 38.08662232076866 18.31189948263119 25 17.889726533628973 25.551515151515154 35.4849963045085 21.073762010347377 26 17.267110125646713 32.71840354767184 28.17087952697709 21.84360679970436 27 18.593939393939394 31.376201034737623 30.41359940872136 19.616260162601627 28 15.303473762010347 27.929046563192905 38.002069475240205 18.76541019955654 29 16.61670362158167 24.4629711751663 37.00931263858093 21.9110125646711 30 19.651145602365112 29.416703621581668 31.478492239467847 19.453658536585365 31 28.7739837398374 26.310125646711015 25.056023651145605 19.859866962305986 32 29.516629711751662 25.808130081300813 26.58920916481892 18.086031042128603 33 26.726385809312635 27.079379157427937 25.935846267553586 20.25838876570584 34 20.234146341463415 25.9529933481153 30.31249076127125 23.500369549150037 35 21.835920177383592 24.491943828529195 31.80192165558019 21.870214338507022 36 28.412712490761272 26.211973392461196 26.469179600886918 18.906134515890614 37 21.00339985218034 31.74988913525499 29.002217294900223 18.24449371766445 38 21.398965262379896 32.81655580192165 25.073170731707318 20.71130820399113 39 21.39778270509978 30.70983000739098 26.938654841093868 20.953732446415373 40 24.050258684405026 25.72594235033259 26.025720620842574 24.19807834441981 41 17.894456762749446 25.01640798226164 27.56836659275684 29.52076866223208 42 21.832963784183296 26.37753141167775 25.333333333333336 26.456171470805618 43 21.956541019955655 27.40339985218034 25.94530672579453 24.694752402069476 44 20.590687361419068 29.47228381374723 28.147228381374724 21.78980044345898 45 18.32431633407243 35.13555062823355 23.28277900960828 23.257354028085736 46 21.697560975609758 32.65572801182557 25.630155210643014 20.01655580192166 47 22.244493717664447 27.064597191426458 28.454101995565413 22.23680709534368 48 23.002512934220253 24.409756097560976 31.188174427198817 21.399556541019958 49 21.352845528455287 25.030007390983002 32.031337767923134 21.58580931263858 50 19.405764966740577 31.59379157427938 28.425129342202517 20.575314116777534 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 57.0 1 190.0 2 323.0 3 950.0 4 1577.0 5 1168.0 6 759.0 7 732.5 8 706.0 9 734.5 10 763.0 11 744.0 12 725.0 13 684.0 14 643.0 15 587.0 16 531.0 17 567.0 18 603.0 19 489.0 20 375.0 21 482.0 22 589.0 23 604.5 24 620.0 25 851.5 26 1083.0 27 1474.5 28 1866.0 29 2016.0 30 2166.0 31 2518.5 32 2871.0 33 3243.0 34 3615.0 35 4036.5 36 4458.0 37 4943.0 38 5428.0 39 6961.5 40 8495.0 41 10814.5 42 13134.0 43 15212.0 44 17290.0 45 17603.0 46 17916.0 47 16077.5 48 14239.0 49 14178.0 50 14117.0 51 12980.0 52 11843.0 53 10465.5 54 9088.0 55 8825.5 56 8563.0 57 7799.5 58 7036.0 59 6412.5 60 5789.0 61 5142.0 62 4495.0 63 3704.0 64 2913.0 65 2297.5 66 1682.0 67 1340.5 68 999.0 69 848.5 70 698.0 71 537.5 72 377.0 73 338.5 74 300.0 75 251.0 76 202.0 77 145.5 78 89.0 79 65.0 80 41.0 81 37.0 82 33.0 83 25.5 84 18.0 85 12.5 86 7.0 87 4.0 88 1.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 169125.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.60960827790096 #Duplication Level Percentage of deduplicated Percentage of total 1 68.62108874467822 19.632224685883223 2 7.398834373579135 4.233555062823355 3 4.0114909271276815 3.4430155210643014 4 2.856198073823007 3.2685883222468592 5 1.975778117637333 2.826311899482631 6 1.723639069152234 2.958758314855876 7 1.3826313396436984 2.7689578713968954 8 1.147025999255983 2.625277161862528 9 0.9258876534534782 2.3840354767184038 >10 9.845823171991897 52.996895787139685 >50 0.0971355350721283 1.6573540280857353 >100 0.012400281073037657 0.7526977087952698 >500 0.0020667135121729425 0.4523281596452328 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 765 0.4523281596452328 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 457 0.2702143385070214 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 304 0.17974870657797487 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.020694752402069475 0.0 2 0.0 0.0 0.0 0.0892830746489283 0.0 3 0.0 0.0 0.0 0.14072431633407242 0.0 4 0.0 0.0 0.0 0.21167775314116777 0.0 5 0.0 0.0 0.0 0.4150776053215078 0.0 6 0.0 0.0 0.0 0.5936437546193644 0.0 7 0.0 0.0 0.0 0.7302291204730229 0.0 8 0.0 0.0 0.0 1.0424242424242425 0.0 9 0.0 0.0 0.0 1.1967479674796748 0.0 10 0.0 0.0 0.0 1.4569105691056912 0.0 11 0.0 0.0 0.0 1.665631929046563 0.0 12 0.0 0.0 0.0 1.8483370288248337 0.0 13 0.0 0.0 0.0 1.9127864005912787 0.0 14 0.0 0.0 0.0 1.9370288248337029 0.0 15 0.0 0.0 0.0 1.9683665927568366 0.0 16 0.0 0.0 0.0 2.0611973392461196 0.0 17 0.0 0.0 0.0 2.1670362158167036 0.0 18 0.0 0.0 0.0 2.327864005912786 0.0 19 0.0 0.0 0.0 2.38640059127864 0.0 20 0.0 0.0 0.0 2.4626755358462677 0.0 21 0.0 0.0 0.0 2.5495934959349595 0.0 22 0.0 0.0 0.0 2.663118994826312 0.0 23 0.0 0.0 0.0 2.7719142645971915 0.0 24 0.0 0.0 0.0 2.8582409460458242 0.0 25 0.0 0.0 0.0 2.925646711012565 0.0 26 0.0 0.0 0.0 2.9859571322985956 0.0 27 0.0 0.0 0.0 3.0557280118255727 0.0 28 0.0 0.0 0.0 3.126681448632668 0.0 29 0.0 0.0 0.0 3.2011825572801182 0.0 30 0.0 0.0 0.0 3.296378418329638 0.0 31 0.0 0.0 0.0 3.3963045084996306 0.0 32 0.0 0.0 0.0 3.496230598669623 0.0 33 0.0 0.0 0.0 3.5819660014781967 0.0 34 0.0 0.0 0.0 3.6830746489283075 0.0 35 0.0 0.0 0.0 3.8119733924611974 0.0 36 0.0 0.0 0.0 3.91189948263119 0.0 37 0.0 0.0 0.0 4.0118255728011825 0.0 38 0.0 0.0 0.0 4.1182557280118255 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCCTTA 20 7.8374264E-4 44.0 17 TTCTACG 20 7.8374264E-4 44.0 1 CAAACGC 20 7.8374264E-4 44.0 34 CGACGGT 20 7.8374264E-4 44.0 28 ATAGCGG 30 2.5148802E-6 44.0 2 CGACCCC 20 7.8374264E-4 44.0 20 AGGGTAC 35 1.4363104E-7 44.0 6 TGAGTAG 30 2.5148802E-6 44.0 1 CACGACG 20 7.8374264E-4 44.0 26 TGCGGGT 20 7.8374264E-4 44.0 4 GGCTTAA 25 4.4267006E-5 44.0 8 ACCTAGG 20 7.8374264E-4 44.0 2 CGAGGGC 35 1.4363104E-7 44.0 4 ACCAGAA 45 4.7475623E-10 44.0 2 GACGGTC 20 7.8374264E-4 44.0 29 CGGGACT 20 7.8374264E-4 44.0 6 GCGATAA 25 4.4267006E-5 44.0 9 TATAGCG 20 7.8374264E-4 44.0 1 CGTAAAT 20 7.8374264E-4 44.0 16 CGGTCTA 20 7.8374264E-4 44.0 31 >>END_MODULE