##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545823_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2022962 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.739955570099685 31.0 31.0 33.0 30.0 34.0 2 32.16654638099974 33.0 31.0 34.0 30.0 34.0 3 32.225847544343395 34.0 31.0 34.0 30.0 34.0 4 35.91160684184874 37.0 35.0 37.0 35.0 37.0 5 35.902852352145025 37.0 35.0 37.0 35.0 37.0 6 35.96322273972522 37.0 35.0 37.0 35.0 37.0 7 36.10524962900934 37.0 35.0 37.0 35.0 37.0 8 36.04324648708182 37.0 35.0 37.0 35.0 37.0 9 37.762753329029415 39.0 38.0 39.0 35.0 39.0 10 37.5855656211041 39.0 37.0 39.0 35.0 39.0 11 37.35453953163727 39.0 37.0 39.0 35.0 39.0 12 36.72713427142971 39.0 35.0 39.0 33.0 39.0 13 36.54062755504058 39.0 35.0 39.0 33.0 39.0 14 37.602270334291994 40.0 35.0 41.0 33.0 41.0 15 37.74027094923187 40.0 35.0 41.0 33.0 41.0 16 37.80382478761341 40.0 35.0 41.0 33.0 41.0 17 37.75091820805334 40.0 35.0 41.0 33.0 41.0 18 37.65636329303269 39.0 35.0 41.0 33.0 41.0 19 37.58332336445272 39.0 36.0 41.0 33.0 41.0 20 37.4447251110006 39.0 35.0 41.0 33.0 41.0 21 37.334742323385214 39.0 35.0 41.0 33.0 41.0 22 37.339308894581315 39.0 35.0 41.0 33.0 41.0 23 37.30690344158714 39.0 35.0 41.0 33.0 41.0 24 37.2825836570336 39.0 35.0 41.0 33.0 41.0 25 37.20071360707715 39.0 35.0 41.0 33.0 41.0 26 37.10424812725103 39.0 35.0 41.0 33.0 41.0 27 37.01060524122549 39.0 35.0 41.0 33.0 41.0 28 36.95546530285789 39.0 35.0 41.0 32.0 41.0 29 36.903897354473294 38.0 35.0 41.0 32.0 41.0 30 36.82677282123935 38.0 35.0 41.0 32.0 41.0 31 36.687833483772806 38.0 35.0 41.0 32.0 41.0 32 36.514659197750625 38.0 35.0 41.0 31.0 41.0 33 36.35947437470402 38.0 35.0 41.0 31.0 41.0 34 36.18577956481634 38.0 35.0 41.0 30.0 41.0 35 35.97549039477756 38.0 35.0 41.0 30.0 41.0 36 35.836507556741054 38.0 35.0 41.0 29.0 41.0 37 35.767832514896476 38.0 35.0 41.0 29.0 41.0 38 35.68923538850458 38.0 35.0 41.0 29.0 41.0 39 35.64294732179843 38.0 35.0 41.0 29.0 41.0 40 35.51548224830719 38.0 35.0 41.0 28.0 41.0 41 35.437129318296634 38.0 35.0 40.0 27.0 41.0 42 35.41915765100877 38.0 35.0 40.0 27.0 41.0 43 35.34237914503584 38.0 35.0 40.0 27.0 41.0 44 35.206528348036194 38.0 34.0 40.0 27.0 41.0 45 35.07680915410176 37.0 34.0 40.0 26.0 41.0 46 35.04860298908235 37.0 34.0 40.0 26.0 41.0 47 34.98445447813651 37.0 34.0 40.0 26.0 41.0 48 34.91612793517624 37.0 34.0 40.0 26.0 41.0 49 34.85200957803458 37.0 34.0 40.0 26.0 41.0 50 34.71057637266543 37.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 6.0 11 9.0 12 6.0 13 23.0 14 27.0 15 62.0 16 123.0 17 313.0 18 661.0 19 1266.0 20 2247.0 21 3745.0 22 5562.0 23 7985.0 24 11738.0 25 17700.0 26 25666.0 27 32302.0 28 34477.0 29 35691.0 30 39736.0 31 46298.0 32 58235.0 33 77724.0 34 153422.0 35 297704.0 36 114439.0 37 152192.0 38 267569.0 39 636034.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.581519573773505 23.42560067860889 27.105551167051082 14.887328580566518 2 33.00541483231025 25.43888614813328 28.77972992077953 12.775969098776944 3 30.33077240205204 24.223292380183118 32.14430127703832 13.301633940726518 4 27.233581253627108 26.08249685362355 31.374143458947817 15.309778433801524 5 22.698844565543 32.137430164283856 30.59434631001472 14.569378960158422 6 21.65008536986854 41.071359719065406 27.359535176637028 9.91901973442902 7 84.68260896645612 5.092977525035073 7.9888796724802535 2.235533836028556 8 85.46977155280227 4.412292470150205 8.079835409661674 2.038100567385843 9 79.86818338653914 6.836361730966771 9.853917176892102 3.441537705601984 10 45.04750954293753 27.988711602096334 16.100203562894407 10.863575292071724 11 39.354619612231964 21.898681240675803 24.443266853257747 14.303432293834486 12 36.27176387890628 22.120286985123794 27.642783206011778 13.96516592995815 13 22.03521371137965 35.85776697733324 26.71142611675355 15.39559319453356 14 15.609438041841617 38.07753185675262 29.79210682158142 16.520923279824338 15 15.43825341257028 24.054332211875458 45.08057986259752 15.426834512956745 16 17.40803831213834 20.465040865819525 42.6784091841567 19.44851163788544 17 17.505815729608365 20.791641167753028 31.024557060389668 30.67798604224894 18 21.989587545391363 23.77953713416268 34.00948707884775 20.221388241598213 19 26.46510413937583 25.140758946534834 27.858555919488353 20.535580994600984 20 28.11140298235953 23.726990422954064 27.95920041997823 20.202406174708177 21 21.894430048611888 26.391449765245216 29.54178081446908 22.172339371673814 22 22.322614067886594 25.28035623012197 28.13162086089605 24.265408841095386 23 19.08903874615539 28.41135918519478 28.91942606929839 23.580175999351447 24 19.719450983261176 24.773624022596568 37.68661991673595 17.8203050774063 25 17.97053034115322 26.725761531852797 34.637625422524 20.66608270446998 26 18.127972744915624 31.3484385767009 29.2836939102168 21.23989476816668 27 19.152559464784805 30.176197081309486 30.8284090358593 19.842834418046408 28 16.902887943520444 27.600617312633652 35.95495120521295 19.541543538632954 29 17.060923536873158 25.221185568488185 36.29420621840648 21.423684676232178 30 18.953050032575995 29.075583228948442 32.79097679541187 19.180389943063687 31 26.328621101137838 27.113806388849614 27.527556128093362 19.030016381919186 32 26.223873705981624 27.008317506705517 28.480268042602873 18.287540744709986 33 24.887862451197797 28.30641406017513 27.312821496399835 19.49290199222724 34 19.302784728531726 27.50990873778153 30.788269873581413 22.39903666010533 35 21.375092562292323 26.242608610542362 30.983429248794593 21.398869578370725 36 25.877945309897072 28.161576935206888 27.24341831433314 18.717059440562895 37 20.87211722217224 32.33862030033189 29.082800368963923 17.706462108531944 38 20.56123644438205 31.79802685369275 26.72353707088912 20.917199631036073 39 21.602926797438606 30.25088953722314 27.742043597457588 20.404140067880665 40 22.02132318847314 27.9882667099036 27.443520936132266 22.546889165491 41 18.215369344555164 27.89988146094687 27.97585916097287 25.9088900335251 42 21.397880929053535 28.163949693568146 25.94853487114439 24.48963450623393 43 22.07446308927207 27.486280019100708 27.57199591490102 22.867260976726207 44 19.856181183828465 30.29463726950877 28.162961044250956 21.68622050241181 45 17.68629366246128 34.70411208910499 25.356877687272426 22.252716561161307 46 20.556985252318135 32.276681420609975 27.566212316395465 19.600121010676425 47 21.394371223977515 28.09019645450582 29.409054643636413 21.106377677880257 48 21.474896710862588 25.850955183537806 31.416358784791804 21.257789320807806 49 20.04965985520242 26.482158340097346 32.20698164374813 21.26120016095211 50 19.02388675615261 31.127722616638376 29.368421156699924 20.479969470509086 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1116.0 1 2773.5 2 4431.0 3 14804.5 4 25178.0 5 17983.0 6 10788.0 7 10621.5 8 10455.0 9 10276.5 10 10098.0 11 9885.0 12 9672.0 13 9171.0 14 8670.0 15 8185.0 16 7700.0 17 7399.0 18 7098.0 19 7309.0 20 7520.0 21 8025.0 22 8530.0 23 9785.5 24 11041.0 25 12913.5 26 14786.0 27 20523.0 28 26260.0 29 33241.0 30 40222.0 31 42480.0 32 44738.0 33 51515.5 34 58293.0 35 62919.5 36 67546.0 37 71230.5 38 74915.0 39 88733.0 40 102551.0 41 125427.0 42 148303.0 43 173288.0 44 198273.0 45 200809.0 46 203345.0 47 187032.0 48 170719.0 49 160241.0 50 149763.0 51 144721.0 52 139679.0 53 128531.5 54 117384.0 55 105737.0 56 94090.0 57 84516.5 58 74943.0 59 69123.0 60 63303.0 61 55438.5 62 47574.0 63 36950.5 64 26327.0 65 21080.5 66 15834.0 67 12220.5 68 8607.0 69 6853.0 70 5099.0 71 4332.5 72 3566.0 73 2722.5 74 1879.0 75 1457.5 76 1036.0 77 857.5 78 679.0 79 597.0 80 515.0 81 360.5 82 206.0 83 141.0 84 76.0 85 70.0 86 64.0 87 47.0 88 30.0 89 36.5 90 43.0 91 24.5 92 6.0 93 5.5 94 5.0 95 5.0 96 5.0 97 2.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2022962.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 14.615041881061034 #Duplication Level Percentage of deduplicated Percentage of total 1 80.35490102503177 11.743902438293533 2 6.959591950701272 2.0342945566918864 3 2.2428852265405985 0.9833958456091172 4 1.1498403511631847 0.6721985955513547 5 0.7258925083331614 0.53044747052188 6 0.5030646426917325 0.44113864930924046 7 0.40290315505730867 0.41219125396219347 8 0.3345444159456313 0.3911504520096402 9 0.2960154747009127 0.3893650704176402 >10 3.7295181152853956 13.15517097075115 >50 1.28200712295603 13.599731524319699 >100 2.0044622003560786 52.78285625426027 >500 0.010267008026409756 0.9525848891792205 >1k 0.0034223360088032517 1.0059536514136247 >5k 3.422336008803252E-4 0.2760470466463701 >10k+ 3.422336008803252E-4 0.6295713310632107 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12587 0.6222064477731168 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 5519 0.2728177790784009 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 3951 0.1953076726107559 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA 3390 0.16757605926359467 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 3054 0.1509667507348136 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 2053 0.10148485240948667 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02120652785371154 0.0 2 0.0 0.0 0.0 0.07622486235529881 0.0 3 0.0 0.0 0.0 0.1102838313324719 0.0 4 0.0 0.0 0.0 0.17355738763259024 0.0 5 0.0 0.0 0.0 0.33984820278383876 0.0 6 0.0 0.0 0.0 0.4644674492155562 0.0 7 0.0 0.0 0.0 0.5602675680512041 0.0 8 0.0 0.0 0.0 0.7763863087887959 0.0 9 0.0 0.0 0.0 0.8750040781784334 0.0 10 0.0 0.0 0.0 1.0853392204104675 0.0 11 0.0 0.0 0.0 1.2255296935879172 0.0 12 0.0 0.0 0.0 1.3899915075023654 0.0 13 0.0 0.0 0.0 1.4378915669201893 0.0 14 0.0 0.0 0.0 1.4566264714809274 0.0 15 0.0 0.0 0.0 1.4853961666111375 0.0 16 0.0 0.0 0.0 1.5475822086623476 0.0 17 0.0 0.0 0.0 1.6242519632103816 0.0 18 0.0 0.0 0.0 1.7483768849835044 0.0 19 0.0 0.0 0.0 1.8000832442725074 0.0 20 0.0 0.0 0.0 1.8582158241232412 0.0 21 0.0 0.0 0.0 1.930337791812204 0.0 22 0.0 0.0 0.0 2.0110610085607146 0.0 23 0.0 0.0 0.0 2.097963283541658 0.0 24 0.0 0.0 0.0 2.165488031905691 0.0 25 0.0 0.0 0.0 2.2191716898290723 0.0 26 0.0 0.0 0.0 2.273893429535503 0.0 27 0.0 0.0 0.0 2.3312845223983447 0.0 28 9.886493171893491E-5 0.0 0.0 2.391394400883457 0.0 29 9.886493171893491E-5 0.0 0.0 2.4564969584203755 0.0 30 9.886493171893491E-5 0.0 0.0 2.5408781776424867 0.0 31 9.886493171893491E-5 0.0 0.0 2.6194263658931805 0.0 32 9.886493171893491E-5 0.0 0.0 2.689818197277062 0.0 33 9.886493171893491E-5 0.0 0.0 2.7615447052391495 0.0 34 9.886493171893491E-5 0.0 0.0 2.8376212701968697 0.0 35 9.886493171893491E-5 0.0 0.0 2.9370299590402587 0.0 36 9.886493171893491E-5 0.0 0.0 3.024723153474954 0.0 37 9.886493171893491E-5 0.0 0.0 3.1101424544801137 0.0 38 9.886493171893491E-5 0.0 0.0 3.188591777799089 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATCG 20 7.857901E-4 44.000004 41 GCGCATA 20 7.857901E-4 44.000004 36 CGCCTAC 20 7.857901E-4 44.000004 15 TACGCCC 20 7.857901E-4 44.000004 24 ACGGATC 20 7.857901E-4 44.000004 36 AGCGCAT 20 7.857901E-4 44.000004 35 AACGACA 20 7.857901E-4 44.000004 23 CGACTCG 20 7.857901E-4 44.000004 36 AACCGAT 35 1.446806E-7 44.0 8 TCGTTAC 30 2.5286754E-6 44.0 44 TAACGCC 25 4.4440443E-5 44.0 12 GCGCATC 30 2.5286754E-6 44.0 20 ATCGTAC 45 4.802132E-10 44.0 28 CGACTTA 50 2.7284841E-11 44.0 43 ATACGTC 30 2.5286754E-6 44.0 1 TAGTCCG 25 4.4440443E-5 44.0 34 AAGTCGT 30 2.5286754E-6 44.0 30 CGCATGG 310 0.0 43.290325 2 CTTAACG 105 0.0 41.904762 1 GCGTATG 95 0.0 41.68421 1 >>END_MODULE