##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545821_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1337139 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.67493955377863 31.0 31.0 33.0 30.0 34.0 2 32.106557358659046 33.0 31.0 34.0 30.0 34.0 3 32.198232943620674 33.0 31.0 34.0 30.0 34.0 4 35.87671364009277 37.0 35.0 37.0 35.0 37.0 5 35.84169559036121 37.0 35.0 37.0 35.0 37.0 6 35.897807931710915 37.0 35.0 37.0 35.0 37.0 7 36.060748358996335 37.0 35.0 37.0 35.0 37.0 8 36.00152414969573 37.0 35.0 37.0 35.0 37.0 9 37.7362727435218 39.0 38.0 39.0 35.0 39.0 10 37.53691874965879 39.0 37.0 39.0 35.0 39.0 11 37.271997152128534 39.0 37.0 39.0 34.0 39.0 12 36.38749598957177 38.0 35.0 39.0 33.0 39.0 13 36.12589192297884 38.0 35.0 39.0 33.0 39.0 14 37.08606958588449 39.0 35.0 41.0 33.0 41.0 15 37.27236435404247 39.0 35.0 41.0 33.0 41.0 16 37.3685847170713 39.0 35.0 41.0 33.0 41.0 17 37.31037162179848 39.0 35.0 41.0 33.0 41.0 18 37.26048152061977 38.0 35.0 41.0 33.0 41.0 19 37.20229310490532 38.0 35.0 41.0 33.0 41.0 20 37.04345098004022 38.0 35.0 41.0 33.0 41.0 21 36.901542023678914 38.0 35.0 41.0 32.0 41.0 22 36.891365071245396 38.0 35.0 41.0 32.0 41.0 23 36.89786028228927 38.0 35.0 41.0 33.0 41.0 24 36.8391902412539 38.0 35.0 41.0 33.0 41.0 25 36.74131186062182 38.0 35.0 41.0 32.0 41.0 26 36.63345022469616 38.0 35.0 41.0 32.0 41.0 27 36.54834613304974 38.0 35.0 41.0 32.0 41.0 28 36.51735608639042 38.0 35.0 41.0 32.0 41.0 29 36.50886332684934 38.0 35.0 41.0 32.0 41.0 30 36.431615561284204 38.0 35.0 40.0 31.0 41.0 31 36.2927175110441 38.0 35.0 40.0 31.0 41.0 32 36.091288190681745 38.0 35.0 40.0 31.0 41.0 33 35.965429173780734 38.0 35.0 40.0 30.0 41.0 34 35.82577204015439 37.0 35.0 40.0 30.0 41.0 35 35.65346908586168 37.0 35.0 40.0 30.0 41.0 36 35.49877462253363 37.0 35.0 40.0 29.0 41.0 37 35.41729693023687 37.0 35.0 40.0 29.0 41.0 38 35.368512174127 37.0 35.0 40.0 29.0 41.0 39 35.320639813811425 37.0 35.0 40.0 28.0 41.0 40 35.15854073510682 37.0 34.0 40.0 27.0 41.0 41 35.10971110707264 36.0 34.0 40.0 27.0 41.0 42 35.08213730958412 36.0 34.0 40.0 27.0 41.0 43 34.99117743181524 36.0 34.0 40.0 27.0 41.0 44 34.86412033453515 36.0 34.0 40.0 27.0 41.0 45 34.74236485511229 36.0 34.0 40.0 26.0 41.0 46 34.71875698786738 36.0 34.0 40.0 26.0 41.0 47 34.68190517216235 35.0 34.0 40.0 26.0 41.0 48 34.61611096527736 35.0 34.0 40.0 26.0 41.0 49 34.56919288121878 36.0 34.0 40.0 26.0 41.0 50 34.40510522840184 35.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 5.0 11 8.0 12 8.0 13 15.0 14 13.0 15 46.0 16 104.0 17 237.0 18 557.0 19 919.0 20 1668.0 21 2660.0 22 4100.0 23 5839.0 24 8352.0 25 12237.0 26 17191.0 27 21552.0 28 23405.0 29 25207.0 30 28371.0 31 34059.0 32 41898.0 33 57258.0 34 117033.0 35 239547.0 36 73974.0 37 97043.0 38 164736.0 39 359097.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.81578130620676 23.782269457401213 29.09473136300714 13.307217873384891 2 32.381973751420006 25.556056625377018 28.78459157948426 13.277378043718716 3 29.75980806782242 24.429920898276094 31.490518188460587 14.3197528454409 4 27.706992317178692 26.661252121133256 30.30163655386613 15.330119007821924 5 23.223314853579172 32.237560941682204 29.817842423263404 14.721281781475223 6 21.44900417981975 40.803611292468474 27.062033191762414 10.685351335949367 7 85.3945625697852 5.3480602988918875 7.2068049768946985 2.050572154428223 8 86.93479137172724 3.9755777073288567 6.833545353175698 2.256085567768198 9 82.38477824668938 6.033179796565653 8.486477471676467 3.0955644850684934 10 52.73759870888517 23.536670458344272 13.265561770317072 10.460169062453492 11 46.829162861901416 19.950132334783444 20.55657639183361 12.66412841148153 12 41.66440437381603 21.518705235581344 24.04634073196579 12.770549658636835 13 23.108816660048056 38.18578322822085 23.226979394064493 15.4784207176666 14 15.240674305363916 41.55932928439003 28.36571216605005 14.834284244196002 15 15.310151001503957 22.951241419179308 47.495585724446 14.243021854870735 16 17.29625715800676 17.868673339121813 45.67610398021447 19.158965522656956 17 17.256246358830307 19.038933125127606 29.595502038307163 34.109318477734924 18 22.07175170270256 23.378571711691905 33.24688009249599 21.30279649310954 19 29.150447335692103 24.043349270345118 26.24274664040163 20.563456753561148 20 31.193914768771236 22.319145578731906 25.41313954644955 21.073800106047315 21 23.298699686420036 26.45042886341659 28.103809701160465 22.14706174900291 22 21.95396290138871 25.242102728287787 26.62572851438781 26.178205855935694 23 20.97343656867386 28.443938887430555 26.69954282987782 23.883081714017766 24 20.578638421286044 23.20873147817841 37.921786740196794 18.290843360338755 25 19.084702487923842 24.142217076908235 35.184823716906024 21.5882567182619 26 17.070850524889334 32.67401519213784 28.488287305956973 21.766846977015852 27 18.49725421216493 32.004900014134655 29.644337649264585 19.85350812443583 28 16.003272659013014 28.439077762296964 36.718845235985185 18.838804342704833 29 17.575510100296228 24.69855415181219 36.64076808768572 21.085167660205858 30 19.00176421449079 28.959592084293405 31.719888508225395 20.318755192990405 31 28.634644565748214 26.536807317713418 24.879612366403194 19.948935750135178 32 29.7753636682499 26.330546038968272 26.77657296661005 17.117517326171775 33 27.5371520836652 26.309830167245142 26.833709883564833 19.319307865524827 34 20.189748410599048 26.91552635889014 29.96120822143397 22.933517009076844 35 21.230627481510897 25.117209205624846 31.737837277949417 21.914326034914843 36 28.503618546762905 26.30601605367879 26.562907820353754 18.627457579204556 37 21.158234110290703 33.035982048238814 27.657782773518687 18.1480010679518 38 21.60044692436613 33.43078019562663 23.51423449618925 21.454538383817987 39 21.54458137860013 31.757954857348413 26.841263324157026 19.85620043989443 40 23.917408736114947 27.09179823488807 25.0459376325124 23.944855396484584 41 17.97853476714089 26.118301836981793 26.76198959120929 29.141173804668025 42 22.61544985225919 26.64173283405839 23.992569209334256 26.750248104348163 43 22.606625040478214 26.656465782540185 25.84458309869056 24.89232607829104 44 20.68027332984828 29.9403427766298 28.213297196476955 21.166086697044957 45 18.869840757019276 35.08700292191014 23.345815206945574 22.69734111412501 46 21.10506087998331 33.74241570995985 26.07036366451057 19.082159745546274 47 22.74670023086605 27.144148813249778 27.218037915280313 22.891113040603855 48 22.81714915203281 23.756243741301393 31.566052594382484 21.860554512283315 49 20.404460568422582 25.359218450736986 31.980893534628784 22.25542744621165 50 19.75187321587359 31.83423712867548 27.7941934234212 20.61969623202973 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 661.0 1 1681.5 2 2702.0 3 7511.0 4 12320.0 5 9048.5 6 5777.0 7 5772.0 8 5767.0 9 5728.0 10 5689.0 11 5596.0 12 5503.0 13 5093.0 14 4683.0 15 4527.0 16 4371.0 17 3985.0 18 3599.0 19 3456.5 20 3314.0 21 3547.0 22 3780.0 23 5067.5 24 6355.0 25 6969.5 26 7584.0 27 9764.5 28 11945.0 29 15596.5 30 19248.0 31 20784.5 32 22321.0 33 26808.5 34 31296.0 35 30479.5 36 29663.0 37 33951.0 38 38239.0 39 48016.0 40 57793.0 41 81302.0 42 104811.0 43 120287.5 44 135764.0 45 141665.5 46 147567.0 47 133919.0 48 120271.0 49 112234.0 50 104197.0 51 100873.0 52 97549.0 53 88334.5 54 79120.0 55 72529.0 56 65938.0 57 61353.5 58 56769.0 59 54204.0 60 51639.0 61 44106.0 62 36573.0 63 29167.5 64 21762.0 65 17324.0 66 12886.0 67 10359.5 68 7833.0 69 6275.0 70 4717.0 71 3916.0 72 3115.0 73 2516.5 74 1918.0 75 1470.5 76 1023.0 77 772.0 78 521.0 79 383.0 80 245.0 81 186.0 82 127.0 83 105.5 84 84.0 85 58.5 86 33.0 87 28.5 88 24.0 89 22.0 90 20.0 91 12.0 92 4.0 93 4.5 94 5.0 95 5.0 96 5.0 97 7.0 98 9.0 99 4.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1337139.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.265008061438614 #Duplication Level Percentage of deduplicated Percentage of total 1 80.23557656633925 12.247967230993439 2 6.583306142184123 2.0098844266271794 3 2.1202437044962656 0.970966117240499 4 1.1026919471154317 0.6733040584800202 5 0.7392257965147441 0.5642143871510473 6 0.5206847407129099 0.4768954058670387 7 0.4055930489097831 0.43339668128899134 8 0.35957621842191134 0.4391147098329671 9 0.3088673879610771 0.42433768504271974 >10 4.319382941292172 15.997860042590952 >50 1.3928720675989326 15.36443712225923 >100 1.9025681406993276 48.610296518964894 >500 0.007429971911088235 0.7620216403450185 >1k 0.0014859943822176469 0.5783591513196116 >5k 4.953314607392157E-4 0.4469448219963687 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5911 0.4420632409943917 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4566 0.3414753439993898 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 2062 0.15420984654549752 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.013536363833528152 0.0 2 0.0 0.0 0.0 0.04719030706605671 0.0 3 0.0 0.0 0.0 0.074263034733113 0.0 4 0.0 0.0 0.0 0.12825891698619216 0.0 5 0.0 0.0 0.0 0.24073787392335427 0.0 6 0.0 0.0 0.0 0.3606954849121894 0.0 7 0.0 0.0 0.0 0.4473730853710796 0.0 8 0.0 0.0 0.0 0.7176516427985422 0.0 9 0.0 0.0 0.0 0.8518186964855561 0.0 10 7.478654051673013E-5 0.0 0.0 1.0603235714461996 0.0 11 7.478654051673013E-5 0.0 0.0 1.1872363307030906 0.0 12 7.478654051673013E-5 0.0 0.0 1.3396513002761867 0.0 13 7.478654051673013E-5 0.0 0.0 1.3906557209085966 0.0 14 7.478654051673013E-5 0.0 0.0 1.4041920847421248 0.0 15 7.478654051673013E-5 0.0 0.0 1.4302925873824637 0.0 16 7.478654051673013E-5 0.0 0.0 1.485634627364844 0.0 17 7.478654051673013E-5 0.0 0.0 1.5492031868040645 0.0 18 7.478654051673013E-5 0.0 0.0 1.6656458303886132 0.0 19 7.478654051673013E-5 0.0 0.0 1.7144066548055212 0.0 20 7.478654051673013E-5 0.0 0.0 1.7669068062482658 0.0 21 7.478654051673013E-5 0.0 0.0 1.8266612521211332 0.0 22 7.478654051673013E-5 0.0 0.0 1.8953900828560082 0.0 23 7.478654051673013E-5 0.0 0.0 1.965839004022768 0.0 24 7.478654051673013E-5 0.0 0.0 2.022078482491349 0.0 25 7.478654051673013E-5 0.0 0.0 2.06620254139622 0.0 26 7.478654051673013E-5 0.0 0.0 2.1111492522467747 0.0 27 7.478654051673013E-5 0.0 0.0 2.1557220303947457 0.0 28 1.4957308103346026E-4 0.0 0.0 2.206128158703022 0.0 29 1.4957308103346026E-4 0.0 0.0 2.260647546739718 0.0 30 1.4957308103346026E-4 0.0 0.0 2.334985368013348 0.0 31 1.4957308103346026E-4 0.0 0.0 2.4054342891801075 0.0 32 1.4957308103346026E-4 0.0 0.0 2.471769950618447 0.0 33 1.4957308103346026E-4 0.0 0.0 2.535936802381802 0.0 34 1.4957308103346026E-4 0.0 0.0 2.5992062156589553 0.0 35 1.4957308103346026E-4 0.0 0.0 2.685435096874745 0.0 36 1.4957308103346026E-4 0.0 0.0 2.760670356634576 0.0 37 1.4957308103346026E-4 0.0 0.0 2.834783818286655 0.0 38 1.4957308103346026E-4 0.0 0.0 2.9123374608025046 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGCAA 25 4.4432323E-5 44.0 37 CGTATGT 30 2.5280297E-6 44.0 22 CGAAACG 20 7.856945E-4 44.0 32 CGACGGT 145 0.0 44.0 28 CGACGAA 25 4.4432323E-5 44.0 10 CGCATCC 25 4.4432323E-5 44.0 29 GAATCGT 20 7.856945E-4 44.0 12 GCACGAC 25 4.4432323E-5 44.0 13 ATCACGC 20 7.856945E-4 44.0 29 ATCGTCA 25 4.4432323E-5 44.0 20 CGTTACC 20 7.856945E-4 44.0 38 AACGCGT 20 7.856945E-4 44.0 19 CGAATTA 40 8.314601E-9 44.0 16 ATGACGG 60 0.0 44.0 2 CGTACGA 20 7.856945E-4 44.0 22 TCCGTAC 20 7.856945E-4 44.0 32 CGTAAGA 20 7.856945E-4 44.0 25 TAGGCGA 20 7.856945E-4 44.0 1 GACGAAT 20 7.856945E-4 44.0 25 TTACCCG 25 4.4432323E-5 44.0 29 >>END_MODULE