##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545819_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2768858 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.690491170005828 31.0 31.0 33.0 30.0 34.0 2 32.10449867779424 33.0 31.0 34.0 30.0 34.0 3 32.14660520691202 33.0 31.0 34.0 30.0 34.0 4 35.83300227025005 37.0 35.0 37.0 35.0 37.0 5 35.817857037088935 37.0 35.0 37.0 35.0 37.0 6 35.862757497856514 37.0 35.0 37.0 35.0 37.0 7 36.09696849748163 37.0 35.0 37.0 35.0 37.0 8 36.060307173571196 37.0 35.0 37.0 35.0 37.0 9 37.87802985924161 39.0 38.0 39.0 35.0 39.0 10 37.55132910391215 39.0 37.0 39.0 35.0 39.0 11 37.27500940821089 39.0 37.0 39.0 34.0 39.0 12 36.23156622694266 37.0 35.0 39.0 33.0 39.0 13 35.88917127566672 37.0 35.0 39.0 32.0 39.0 14 36.79176360795678 38.0 35.0 41.0 32.0 41.0 15 37.05188637337126 38.0 35.0 41.0 33.0 41.0 16 37.202469754678646 38.0 35.0 41.0 33.0 41.0 17 37.15392880386065 38.0 35.0 41.0 33.0 41.0 18 37.09940488100148 38.0 35.0 41.0 33.0 41.0 19 37.012788665940974 37.0 35.0 41.0 33.0 41.0 20 36.83749473609698 37.0 35.0 41.0 33.0 41.0 21 36.69390412942809 37.0 35.0 41.0 32.0 41.0 22 36.65565153575951 37.0 35.0 41.0 32.0 41.0 23 36.690922033560405 37.0 35.0 41.0 33.0 41.0 24 36.63112842912132 37.0 35.0 41.0 33.0 41.0 25 36.54871828024406 37.0 35.0 41.0 32.0 41.0 26 36.44111110067761 37.0 35.0 40.0 32.0 41.0 27 36.35038272096294 37.0 35.0 40.0 32.0 41.0 28 36.35690345983795 36.0 35.0 40.0 32.0 41.0 29 36.364277980308124 36.0 35.0 40.0 32.0 41.0 30 36.284675487150295 36.0 35.0 40.0 32.0 41.0 31 36.09694502209936 36.0 35.0 40.0 31.0 41.0 32 35.8833403518707 36.0 35.0 40.0 31.0 41.0 33 35.70302160674184 36.0 35.0 40.0 30.0 41.0 34 35.532008864304345 36.0 35.0 40.0 30.0 41.0 35 35.326819215719986 36.0 35.0 40.0 29.0 41.0 36 35.15004886491109 36.0 35.0 40.0 28.0 41.0 37 35.060134900381314 36.0 34.0 40.0 27.0 41.0 38 35.01594556311664 36.0 34.0 40.0 27.0 41.0 39 35.03179794702365 36.0 34.0 40.0 27.0 41.0 40 34.802054132064555 36.0 34.0 40.0 26.0 41.0 41 34.79708060146096 36.0 34.0 40.0 26.0 41.0 42 34.789377786798745 36.0 34.0 40.0 27.0 41.0 43 34.69546903452615 35.0 34.0 40.0 26.0 41.0 44 34.553943178017796 35.0 34.0 40.0 26.0 41.0 45 34.46457239771776 35.0 34.0 40.0 25.0 41.0 46 34.43304026425335 35.0 34.0 40.0 25.0 41.0 47 34.375676903618746 35.0 34.0 40.0 25.0 41.0 48 34.33416809384952 35.0 34.0 40.0 24.0 41.0 49 34.31970509141314 36.0 34.0 40.0 24.0 41.0 50 34.10115939495633 35.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 2.0 11 5.0 12 7.0 13 12.0 14 22.0 15 42.0 16 143.0 17 353.0 18 845.0 19 1729.0 20 3370.0 21 5443.0 22 8567.0 23 12607.0 24 19174.0 25 28811.0 26 41231.0 27 49316.0 28 52271.0 29 53516.0 30 59652.0 31 71076.0 32 90522.0 33 121564.0 34 250455.0 35 565935.0 36 146301.0 37 178525.0 38 298911.0 39 708449.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.18933582003844 23.880639599430523 29.386953032622117 14.54307154790892 2 31.020659058716625 25.346875860011604 30.735812381855627 12.89665269941615 3 27.621748749845604 24.77165676246308 33.63845310954914 13.96814137814218 4 25.03573675500874 26.860351812913486 31.90654775362261 16.19736367845516 5 22.16892307225578 32.38197841853934 31.840816683267974 13.608281825936903 6 20.038766885120147 39.58101137725373 29.348995145290946 11.031226592335178 7 85.86453332023527 4.962479115938773 7.637228055754394 1.5357595080715587 8 87.33777607952449 3.6084912985786923 7.423385381265489 1.6303472406313362 9 84.01590114047018 4.658310393671326 8.950115896156467 2.3756725697020213 10 55.10813483392793 19.915683650082453 15.41025216894474 9.565929347044882 11 49.53424841577286 19.4662564855258 20.09261580044914 10.906879298252203 12 44.42611358184493 20.77307684251052 23.696989878137483 11.103819697507058 13 19.965090300766597 45.273972157474304 22.900199287937482 11.860738253821612 14 13.314225576031708 46.07336309771032 27.4585406691134 13.15387065714457 15 12.300125177961457 22.92284400283438 52.00660344445255 12.77042737475161 16 12.64550222510508 17.666019709208634 51.08037320801573 18.60810485767056 17 13.461867672520583 18.36280517094051 30.767666669796718 37.40766048674219 18 20.320760400136084 23.596262430214914 36.14717692276022 19.93580024688879 19 27.27976660413788 24.997309360032187 27.500001805798636 20.222922230031298 20 30.79236999513879 21.77208076398284 27.313751734469587 20.12179750640878 21 20.403104817942992 28.833584098570604 29.732330079765738 21.030981003720665 22 20.809445627041907 25.404697532340048 26.454588859378127 27.33126798123992 23 16.640037156112736 31.08100884913564 26.36498513105403 25.913968863697594 24 18.007243419489193 23.65206160807091 43.3809895632062 14.959705409233697 25 13.932205985283463 25.954202057310273 38.44772826919979 21.665863688206475 26 14.024554527534455 35.54447356997 30.3823453568222 20.048626545673343 27 15.66743401070044 36.58002685583732 30.32416252476653 17.428376608695714 28 12.280767016582288 29.74901565916345 41.3139640963892 16.65625322786506 29 13.081169204054524 23.901478515691306 39.89482306423804 23.122529216016133 30 15.987674340829324 32.07622059347211 34.43087366704974 17.505231398648828 31 28.009923224665183 27.805542935029532 26.058649450423243 18.12588438988204 32 28.31546435389608 27.60293232805727 27.881855985391812 16.199747332654834 33 27.423074783900077 28.35605870723598 26.243274302979785 17.977592205884157 34 18.3440248651249 28.920804172695025 28.969741315733778 23.765429646446297 35 18.377793299620276 26.610032005975025 32.016882050289325 22.995292644115374 36 29.783073021440607 25.50827814210768 27.583176890978155 17.12547194547355 37 18.101975615939857 33.674171806571515 31.32992013313792 16.893932444350703 38 18.954565383995856 33.32352182741044 26.507859919143563 21.214052869450146 39 18.958032517377198 32.48646192762504 29.33527107565646 19.220234479341304 40 22.827172791092934 27.643996189042557 26.03102073129066 23.497810288573845 41 15.495016356924046 25.086588044601783 29.471031017119692 29.94736458135448 42 21.4286178633935 24.871589658985762 25.53395659871326 28.165835878907476 43 22.400823733105852 26.865335817149166 26.12156347490554 24.612276974839446 44 18.24351411303866 32.13321159842795 28.553649193999835 21.06962509453356 45 14.840522699250016 41.2919694690013 22.436289618319176 21.431218213429506 46 21.296577867120668 35.04181146162064 26.023544724937143 17.63806594632155 47 20.73797211702442 28.656976991958416 27.556270491300022 23.04878039971714 48 22.14299180384115 24.984668769579372 32.48606465192509 20.38627477465439 49 20.682497982922925 24.85002842327053 32.69857103542327 21.768902558383278 50 17.91789250297415 34.73605363655341 28.10747246698819 19.238581393484246 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2815.0 1 4180.0 2 5545.0 3 16653.5 4 27762.0 5 20790.0 6 13818.0 7 14347.5 8 14877.0 9 15613.5 10 16350.0 11 16145.0 12 15940.0 13 15007.0 14 14074.0 15 12960.0 16 11846.0 17 11026.0 18 10206.0 19 10342.5 20 10479.0 21 10355.0 22 10231.0 23 10553.0 24 10875.0 25 11072.0 26 11269.0 27 17909.0 28 24549.0 29 31653.5 30 38758.0 31 45484.0 32 52210.0 33 61414.0 34 70618.0 35 80677.5 36 90737.0 37 98206.5 38 105676.0 39 129290.0 40 152904.0 41 205425.5 42 257947.0 43 306691.0 44 355435.0 45 350796.0 46 346157.0 47 302436.0 48 258715.0 49 244887.5 50 231060.0 51 200691.5 52 170323.0 53 153508.0 54 136693.0 55 122119.5 56 107546.0 57 87298.5 58 67051.0 59 59076.0 60 51101.0 61 42403.5 62 33706.0 63 26879.0 64 20052.0 65 14527.0 66 9002.0 67 6854.5 68 4707.0 69 4058.0 70 3409.0 71 2753.0 72 2097.0 73 1592.0 74 1087.0 75 823.5 76 560.0 77 432.0 78 304.0 79 237.5 80 171.0 81 135.0 82 99.0 83 70.0 84 41.0 85 30.5 86 20.0 87 14.5 88 9.0 89 12.5 90 16.0 91 11.0 92 6.0 93 4.0 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2768858.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.411426330020387 #Duplication Level Percentage of deduplicated Percentage of total 1 79.00964760214934 10.59632068177098 2 9.223658839813263 2.4740484204679376 3 3.3299303148514245 1.3397734530519438 4 1.5604367096294953 0.8371072789542156 5 0.8380037333558719 0.5619412667092162 6 0.58332794945462 0.46939558922114955 7 0.41211840661598076 0.3868966954702929 8 0.3084802656960267 0.3309728286117902 9 0.2321381454792451 0.2801973272834206 >10 2.2170015091040245 6.557226736509349 >50 0.6318730120844575 6.1038810272163015 >100 1.395621349255073 47.215873988768564 >500 0.24795303159115167 20.156149561323552 >1k 0.009264179202306766 1.6449786021900552 >5k 0.0 0.0 >10k+ 5.44951717782751E-4 1.0452365424512307 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15037 0.543075881825648 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 13566 0.48994928595110326 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA 4334 0.15652662577857007 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04431429853029661 0.0 2 0.0 0.0 0.0 0.1809410233388639 0.0 3 0.0 0.0 0.0 0.25949326400992756 0.0 4 0.0 0.0 0.0 0.3737642017033737 0.0 5 0.0 0.0 0.0 0.6474149270204539 0.0 6 0.0 0.0 0.0 0.8636773716817547 0.0 7 0.0 0.0 0.0 1.01438932585203 0.0 8 0.0 0.0 0.0 1.364533681395001 0.0 9 0.0 0.0 0.0 1.4911201657867612 0.0 10 3.611597272232812E-5 0.0 0.0 1.7375033316984836 0.0 11 3.611597272232812E-5 0.0 0.0 1.963517088994813 0.0 12 3.611597272232812E-5 0.0 0.0 2.165080332758126 0.0 13 3.611597272232812E-5 0.0 0.0 2.2456911838743627 0.0 14 3.611597272232812E-5 0.0 0.0 2.2729948592524427 0.0 15 3.611597272232812E-5 0.0 0.0 2.3237378009273137 0.0 16 3.611597272232812E-5 0.0 0.0 2.4501798214281845 0.0 17 3.611597272232812E-5 0.0 0.0 2.6068509110976437 0.0 18 3.611597272232812E-5 0.0 0.0 2.852114481854974 0.0 19 3.611597272232812E-5 0.0 0.0 2.940815310861012 0.0 20 3.611597272232812E-5 0.0 0.0 3.0302384593214966 0.0 21 3.611597272232812E-5 0.0 0.0 3.167876431366289 0.0 22 3.611597272232812E-5 0.0 0.0 3.2993385720755635 0.0 23 3.611597272232812E-5 0.0 0.0 3.4665555257799423 0.0 24 7.223194544465625E-5 0.0 0.0 3.583751857263897 0.0 25 7.223194544465625E-5 0.0 0.0 3.684118145459247 0.0 26 7.223194544465625E-5 0.0 0.0 3.78856553857222 0.0 27 7.223194544465625E-5 0.0 0.0 3.884959069768114 0.0 28 7.223194544465625E-5 0.0 0.0 3.989623158717421 0.0 29 7.223194544465625E-5 0.0 0.0 4.098910092175186 0.0 30 7.223194544465625E-5 0.0 0.0 4.246479956718618 0.0 31 7.223194544465625E-5 0.0 0.0 4.389607556617205 0.0 32 7.223194544465625E-5 0.0 0.0 4.511607312473229 0.0 33 7.223194544465625E-5 0.0 0.0 4.635701794747148 0.0 34 7.223194544465625E-5 0.0 0.0 4.763082830538799 0.0 35 7.223194544465625E-5 0.0 0.0 4.94272367885966 0.0 36 7.223194544465625E-5 0.0 0.0 5.083720436367629 0.0 37 7.223194544465625E-5 0.0 0.0 5.22692026821166 0.0 38 7.223194544465625E-5 0.0 0.0 5.378751817536327 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGTAAG 145 0.0 44.000004 1 TCACGGT 45 4.802132E-10 44.0 3 GCCCCGT 45 4.802132E-10 44.0 42 TATTTCG 70 0.0 44.0 1 AACGTAC 70 0.0 44.0 26 CGAACAC 30 2.5290155E-6 44.0 15 GATCGCG 105 0.0 44.0 1 AGTCACG 60 0.0 44.0 19 CTCCGAT 25 4.444472E-5 44.0 17 GGTCGAC 55 1.8189894E-12 44.0 9 CGACGTA 25 4.444472E-5 44.0 22 ACGCATG 75 0.0 44.0 1 ACGTTAC 20 7.858406E-4 44.0 23 TCCGAAC 20 7.858406E-4 44.0 27 TTCGTCG 40 8.3200575E-9 44.0 17 TGTATCG 75 0.0 44.0 3 ACTTACG 95 0.0 44.0 1 CCGCTCG 50 2.7284841E-11 44.0 19 CCTCGGT 75 0.0 44.0 40 TCGATAC 25 4.444472E-5 44.0 23 >>END_MODULE