SRR1545818_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545818_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1455943
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8692	0.5970013935985131	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCC	6894	0.4735075480290094	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	5321	0.36546760415758034	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTT	4479	0.3076356698030074	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA	3286	0.2256956487994379	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATG	2540	0.17445737916937681	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTC	1469	0.10089680708654117	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGA	20	7.857174E-4	44.000004	29
CGAGTTA	20	7.857174E-4	44.000004	16
CCGGCTA	20	7.857174E-4	44.000004	18
TGGCGTA	20	7.857174E-4	44.000004	27
TAGCGAA	20	7.857174E-4	44.000004	15
AAGCGTA	20	7.857174E-4	44.000004	10
TAACGCG	20	7.857174E-4	44.000004	1
CGCTAAT	40	8.314601E-9	44.000004	12
TATTCGT	40	8.314601E-9	44.000004	34
GTCACGA	20	7.857174E-4	44.000004	9
TCGCTAA	40	8.314601E-9	44.000004	11
AACGCAT	20	7.857174E-4	44.000004	18
TATTACG	40	8.314601E-9	44.000004	1
CGTCGTG	20	7.857174E-4	44.000004	15
ACTCCGT	20	7.857174E-4	44.000004	16
CACGTAG	40	8.314601E-9	44.000004	1
ATCGGCG	20	7.857174E-4	44.000004	34
ATCGGCC	20	7.857174E-4	44.000004	33
CCTATCG	20	7.857174E-4	44.000004	1
TTACCCG	20	7.857174E-4	44.000004	38