SRR1545807_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545807_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	4577309
Sequences flagged as poor quality	0
Sequence length	50
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31405	0.6861018122219845	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	13218	0.28877228957013823	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	9741	0.21281062737953677	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	9442	0.20627840506288736	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	6407	0.13997307151428928	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTATA	20	7.8589446E-4	44.000004	28
TAATCGC	40	8.3218765E-9	44.000004	25
ATCGTTC	60	0.0	44.0	14
CGGTAGT	120	0.0	44.0	12
ACCTAGT	65	0.0	43.999996	14
CGGTCTA	585	0.0	43.623936	31
ACGTAGG	235	0.0	43.063828	2
TCGTAAG	280	0.0	42.428574	1
TAATGCG	135	0.0	42.37037	1
CTATGCG	85	0.0	41.411766	1
CGTTTTT	17515	0.0	41.18641	1
ACGAACT	70	0.0	40.857143	10
CGACGGT	625	0.0	40.832	28
CGTATGG	620	0.0	40.80645	2
CAATCGT	65	0.0	40.615383	12
TATCGCG	65	0.0	40.615383	32
TACGTAG	65	0.0	40.615383	1
CACGACG	630	0.0	40.507935	26
CGTAATC	60	3.6379788E-12	40.333332	30
AGGGCGA	3170	0.0	40.32177	6