##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545807_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4577309 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.66235423476982 31.0 31.0 33.0 30.0 34.0 2 32.07965837569629 33.0 31.0 34.0 30.0 34.0 3 32.162627430221555 33.0 31.0 34.0 30.0 34.0 4 35.8554056542829 37.0 35.0 37.0 35.0 37.0 5 35.83170395531523 37.0 35.0 37.0 35.0 37.0 6 35.88243769428719 37.0 35.0 37.0 35.0 37.0 7 36.04454975619955 37.0 35.0 37.0 35.0 37.0 8 35.978927575132026 37.0 35.0 37.0 35.0 37.0 9 37.69303863907811 39.0 38.0 39.0 35.0 39.0 10 37.50901457603146 39.0 37.0 39.0 35.0 39.0 11 37.29431200733881 39.0 37.0 39.0 34.0 39.0 12 36.56318810899592 39.0 35.0 39.0 33.0 39.0 13 36.32949337700382 38.0 35.0 39.0 33.0 39.0 14 37.35957764704109 39.0 35.0 41.0 33.0 41.0 15 37.50588478951279 39.0 35.0 41.0 33.0 41.0 16 37.56155461647881 39.0 35.0 41.0 33.0 41.0 17 37.46519865711491 39.0 35.0 41.0 33.0 41.0 18 37.401246889821074 39.0 35.0 41.0 33.0 41.0 19 37.32363578687827 39.0 35.0 41.0 33.0 41.0 20 37.18594265757457 39.0 35.0 41.0 33.0 41.0 21 37.07951069067 38.0 35.0 41.0 33.0 41.0 22 37.074045689290365 39.0 35.0 41.0 33.0 41.0 23 37.06775159815516 38.0 35.0 41.0 33.0 41.0 24 37.0331159639867 38.0 35.0 41.0 33.0 41.0 25 36.919018576198376 38.0 35.0 41.0 32.0 41.0 26 36.81040366730758 38.0 35.0 41.0 32.0 41.0 27 36.70901789675987 38.0 35.0 41.0 32.0 41.0 28 36.667489566467985 38.0 35.0 41.0 32.0 41.0 29 36.60944738491546 38.0 35.0 41.0 31.0 41.0 30 36.51555619251398 38.0 35.0 41.0 31.0 41.0 31 36.38839283080954 38.0 35.0 41.0 31.0 41.0 32 36.198973021047955 38.0 35.0 41.0 31.0 41.0 33 36.02856700301422 38.0 35.0 41.0 30.0 41.0 34 35.83223680114233 38.0 35.0 41.0 30.0 41.0 35 35.62179328509393 38.0 35.0 41.0 29.0 41.0 36 35.50024654223694 38.0 35.0 40.0 28.0 41.0 37 35.41266757389549 38.0 35.0 40.0 28.0 41.0 38 35.34913854406596 38.0 35.0 40.0 27.0 41.0 39 35.29806006105334 38.0 35.0 40.0 27.0 41.0 40 35.148523510210914 37.0 34.0 40.0 26.0 41.0 41 35.06865671511362 37.0 34.0 40.0 26.0 41.0 42 35.01763678178598 37.0 34.0 40.0 26.0 41.0 43 34.93499237215578 37.0 34.0 40.0 26.0 41.0 44 34.80103615464894 37.0 34.0 40.0 25.0 41.0 45 34.6981287476987 36.0 34.0 40.0 24.0 41.0 46 34.635086903680744 36.0 34.0 40.0 24.0 41.0 47 34.57932531974573 36.0 34.0 40.0 24.0 41.0 48 34.503521173685236 36.0 34.0 40.0 24.0 41.0 49 34.433888557665654 36.0 34.0 40.0 24.0 41.0 50 34.290133132807945 36.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 11.0 11 12.0 12 18.0 13 31.0 14 47.0 15 130.0 16 296.0 17 652.0 18 1599.0 19 3092.0 20 5775.0 21 9309.0 22 13951.0 23 20719.0 24 30063.0 25 43991.0 26 62992.0 27 79522.0 28 86222.0 29 91016.0 30 100510.0 31 118297.0 32 144168.0 33 190564.0 34 365004.0 35 715931.0 36 267516.0 37 346522.0 38 582122.0 39 1297225.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.901097784746455 23.371024328923394 27.668352737383472 15.059525148946683 2 30.951941413612232 26.39618605604297 29.566869966611385 13.085002563733408 3 29.53442732400194 24.801865025935545 31.93561981504854 13.72808783501398 4 27.092971001083825 27.098563806813132 30.500540819944643 15.307924372158402 5 22.948985965334654 33.11744957572233 29.572812322698773 14.360752136244242 6 20.62205107848301 41.40764803075344 27.742632188475806 10.227668702287742 7 84.10747450084754 5.155671159626759 8.65930178626787 2.0775525532578203 8 85.05193772148658 4.486216683208409 8.005533382168432 2.456312213136583 9 79.6121913552264 6.410950189292443 10.032379286607043 3.944479168874113 10 47.00338124430752 25.91424349983801 14.968707596537618 12.11366765931686 11 41.91244244161799 21.036333793501814 22.57450829734239 14.476715467537804 12 38.23488866493391 20.68608433470408 26.292107436924184 14.78691956343782 13 21.944902561745337 34.72376455249143 26.716286796456174 16.615046089307057 14 15.729766113670717 37.70339734547088 29.869405801530984 16.69743073932741 15 16.93184794821586 23.10838092861985 44.54800844775828 15.411762675406008 16 18.876309202634122 19.623538633725623 41.95635470535199 19.543797458288264 17 17.904406278885695 20.287072600953966 30.83383708637542 30.974684033784918 18 22.87907589371834 22.68599301467303 33.54477488847705 20.89015620313158 19 27.27036780781022 24.328573841093096 27.606788180566355 20.794270170530325 20 27.89287330175874 23.455637362476512 27.589048499893714 21.062440835871033 21 22.547199675617268 26.342114985027226 30.331926465965047 20.77875887339046 22 22.333012693702784 24.178289034015403 28.1012708558675 25.387427416414315 23 20.69467016537446 27.489055250585004 28.140507883562154 23.67576670047838 24 20.730717546051622 23.694664266712167 36.37213480671722 19.202483380518988 25 18.940779396802792 25.811759704227967 33.32648068985511 21.920980209114134 26 17.789098354513534 30.523064971143526 29.64333410744173 22.04450256690121 27 19.316611572432624 30.331904619067668 29.32083020831672 21.030653600182987 28 16.39445796646021 28.227021597187342 35.96899400936227 19.40952642699018 29 18.155973302217525 25.00875514412507 35.10304853790732 21.732223015750087 30 18.620460187415794 29.256862492787793 31.316435049501795 20.80624227029462 31 27.025944719921686 27.068502476018114 25.869326278824524 20.03622652523568 32 27.715694964006143 26.75307697164426 27.197683180226633 18.33354488412296 33 25.632178207763555 28.03278083258089 26.42841022967862 19.90663072997694 34 19.690695996272044 28.3070904760854 29.99410789177659 22.008105635865963 35 20.996201043014576 26.834849908537965 30.494882473523198 21.67406657492426 36 27.26132319229486 27.274911962465282 26.242798989537302 19.220965855702556 37 20.467353198134536 31.997249912557795 28.12180693940479 19.413589949902878 38 20.61774723969913 32.624845733595876 24.928795499713914 21.828611526991075 39 21.677015906070576 30.08617071733632 26.96545066107619 21.27136271551691 40 22.909989253511178 26.783138302439273 26.749078989423698 23.55779345462585 41 18.218564663211506 26.964314622412427 27.390307274426963 27.426813439949104 42 21.290981229364238 27.56117185883671 24.855236996235124 26.292609915563926 43 22.53874492633117 26.138676676623756 26.456680114888464 24.86589828215661 44 19.865514869107592 29.476052414202318 28.314824277757957 22.343608438932133 45 19.02888793393673 33.87435718235321 25.00705108612943 22.089703797580633 46 21.4467933014791 32.467373297280126 26.38185449136163 19.703978909879144 47 22.059205528838014 27.19425321733796 27.989261812999732 22.757279440824295 48 22.177659406432905 25.374210043499357 30.313968316318608 22.13416223374913 49 21.054597799711576 25.008471134459132 32.22793130199425 21.708999763835042 50 19.583689892904324 30.151536634297578 28.789950601980337 21.474822870817768 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3645.0 1 7854.5 2 12064.0 3 37218.0 4 62372.0 5 44155.5 6 25939.0 7 24598.0 8 23257.0 9 22751.5 10 22246.0 11 21628.0 12 21010.0 13 19452.0 14 17894.0 15 17684.5 16 17475.0 17 15309.5 18 13144.0 19 14853.5 20 16563.0 21 17884.0 22 19205.0 23 20135.5 24 21066.0 25 23677.0 26 26288.0 27 35513.0 28 44738.0 29 60004.0 30 75270.0 31 84383.0 32 93496.0 33 92126.5 34 90757.0 35 103741.0 36 116725.0 37 132875.0 38 149025.0 39 180159.0 40 211293.0 41 275854.5 42 340416.0 43 372895.0 44 405374.0 45 428428.5 46 451483.0 47 421698.5 48 391914.0 49 382626.0 50 373338.0 51 349044.5 52 324751.0 53 298136.5 54 271522.0 55 247731.0 56 223940.0 57 212351.5 58 200763.0 59 191087.0 60 181411.0 61 154246.5 62 127082.0 63 105924.5 64 84767.0 65 65552.0 66 46337.0 67 36350.0 68 26363.0 69 22032.0 70 17701.0 71 14544.0 72 11387.0 73 9162.5 74 6938.0 75 5457.0 76 3976.0 77 3148.5 78 2321.0 79 1672.5 80 1024.0 81 770.0 82 516.0 83 374.5 84 233.0 85 174.0 86 115.0 87 101.0 88 87.0 89 59.0 90 31.0 91 23.0 92 15.0 93 14.0 94 13.0 95 13.5 96 14.0 97 9.0 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 4577309.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.700402667708744 #Duplication Level Percentage of deduplicated Percentage of total 1 79.43783300255731 10.88330299185238 2 8.831547148608758 2.4199150422958993 3 3.0514933569065708 1.2542006318237486 4 1.4518294209079203 0.7956259068505965 5 0.8449549405280494 0.5788111460652086 6 0.5750643136190786 0.47271675938465535 7 0.38422185693328365 0.36847959076045367 8 0.3060150165667221 0.33540231594637243 9 0.24896828892302883 0.3069869228762351 >10 2.3367559410772665 7.423838687337475 >50 0.8520419905398732 8.432258670607432 >100 1.5050046153878278 49.61824777774251 >500 0.16439965567637305 13.546526055205263 >1k 0.009061398344367018 2.0071554892495636 >5k 4.854320541625188E-4 0.56729742621931 >10k+ 3.2362136944167925E-4 0.9892345857828946 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 31405 0.6861018122219845 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 13218 0.28877228957013823 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 9741 0.21281062737953677 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 9442 0.20627840506288736 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 6407 0.13997307151428928 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05206115645677405 0.0 2 0.0 0.0 0.0 0.17599860529407124 0.0 3 0.0 0.0 0.0 0.2390050573382745 0.0 4 0.0 0.0 0.0 0.3426467385094605 0.0 5 0.0 0.0 0.0 0.626809332732398 0.0 6 0.0 0.0 0.0 0.8313181391074974 0.0 7 0.0 0.0 0.0 0.9887468816284852 0.0 8 0.0 0.0 0.0 1.314964753308112 0.0 9 0.0 0.0 0.0 1.4625405451106752 0.0 10 0.0 0.0 0.0 1.7966232998471372 0.0 11 0.0 0.0 0.0 2.024333511239901 0.0 12 0.0 0.0 0.0 2.290144711663556 0.0 13 0.0 0.0 0.0 2.38006654128004 0.0 14 0.0 0.0 0.0 2.41111098245716 0.0 15 0.0 0.0 0.0 2.4635435361693956 0.0 16 0.0 0.0 0.0 2.570331170563316 0.0 17 0.0 0.0 0.0 2.7031384597369326 0.0 18 0.0 0.0 0.0 2.9043920784023975 0.0 19 0.0 0.0 0.0 2.9933307976367773 0.0 20 0.0 0.0 0.0 3.0885832702140057 0.0 21 0.0 0.0 0.0 3.2061632719136943 0.0 22 0.0 0.0 0.0 3.326867379938737 0.0 23 0.0 0.0 0.0 3.4529676716166637 0.0 24 0.0 0.0 0.0 3.554664978921021 0.0 25 0.0 0.0 0.0 3.6444120333584644 0.0 26 0.0 0.0 0.0 3.7299863303963092 0.0 27 0.0 0.0 0.0 3.8183570302988064 0.0 28 0.0 0.0 0.0 3.9148329291293202 0.0 29 0.0 0.0 0.0 4.011964234881237 0.0 30 2.184689738009822E-5 0.0 0.0 4.132144017369157 0.0 31 2.184689738009822E-5 0.0 0.0 4.255207590311251 0.0 32 2.184689738009822E-5 0.0 0.0 4.363043875779415 0.0 33 2.184689738009822E-5 0.0 0.0 4.474747062083858 0.0 34 4.369379476019644E-5 0.0 0.0 4.58214640960442 0.0 35 4.369379476019644E-5 0.0 0.0 4.719323078254057 0.0 36 4.369379476019644E-5 0.0 0.0 4.841927866351169 0.0 37 4.369379476019644E-5 0.0 0.0 4.962610127478831 0.0 38 4.369379476019644E-5 0.0 0.0 5.082134503045348 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTATA 20 7.8589446E-4 44.000004 28 TAATCGC 40 8.3218765E-9 44.000004 25 ATCGTTC 60 0.0 44.0 14 CGGTAGT 120 0.0 44.0 12 ACCTAGT 65 0.0 43.999996 14 CGGTCTA 585 0.0 43.623936 31 ACGTAGG 235 0.0 43.063828 2 TCGTAAG 280 0.0 42.428574 1 TAATGCG 135 0.0 42.37037 1 CTATGCG 85 0.0 41.411766 1 CGTTTTT 17515 0.0 41.18641 1 ACGAACT 70 0.0 40.857143 10 CGACGGT 625 0.0 40.832 28 CGTATGG 620 0.0 40.80645 2 CAATCGT 65 0.0 40.615383 12 TATCGCG 65 0.0 40.615383 32 TACGTAG 65 0.0 40.615383 1 CACGACG 630 0.0 40.507935 26 CGTAATC 60 3.6379788E-12 40.333332 30 AGGGCGA 3170 0.0 40.32177 6 >>END_MODULE