SRR1545801_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545801_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	4268405
Sequences flagged as poor quality	0
Sequence length	50
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29618	0.6938891693735716	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	9137	0.21406122427464125	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	4912	0.11507811465875427	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA	4910	0.11503125874887692	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	4723	0.11065023117534536	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	4623	0.10830743568147821	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTATCG	20	7.8588846E-4	44.000004	1
TACCGAT	20	7.8588846E-4	44.000004	10
GTCGAAC	35	1.4473153E-7	44.0	9
ATTTACG	160	0.0	42.625004	1
CGACGGT	490	0.0	41.7551	28
CGTTTTT	19015	0.0	41.246384	1
TTACGCT	65	0.0	40.615383	35
TTACGCG	120	0.0	40.333332	1
TCACGAC	515	0.0	40.15534	25
CACGACG	525	0.0	39.39048	26
TACGAAC	40	4.128051E-7	38.500004	41
ACGATTG	145	0.0	37.931038	1
TAACGCG	140	0.0	37.714287	1
TTAGCGG	935	0.0	37.64706	2
TACGGGA	1275	0.0	37.44314	4
TAGGGTC	1865	0.0	37.158176	5
AGGGCGC	925	0.0	37.102703	6
TTTAGCG	255	0.0	37.09804	1
CGACAAT	305	0.0	36.786884	20
TACGCTA	90	0.0	36.666668	37