Basic Statistics
Measure | Value |
---|---|
Filename | SRR1545797_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 1989603 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20054 | 1.0079397749199213 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA | 6150 | 0.3091068921789925 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGCATA | 25 | 4.4440174E-5 | 44.0 | 23 |
CTATACG | 25 | 4.4440174E-5 | 44.0 | 1 |
GTTAGCG | 40 | 8.3182385E-9 | 44.0 | 1 |
GTTACGC | 25 | 4.4440174E-5 | 44.0 | 38 |
CGTTTTT | 10870 | 0.0 | 41.71297 | 1 |
CACGACG | 220 | 0.0 | 40.0 | 26 |
CGTAAGG | 265 | 0.0 | 39.84906 | 2 |
ATCGACG | 50 | 1.3496901E-9 | 39.600002 | 1 |
GTTACGG | 230 | 0.0 | 39.217392 | 2 |
CGTGCGG | 275 | 0.0 | 39.2 | 2 |
ATTAACG | 130 | 0.0 | 38.92308 | 1 |
TATAGCG | 40 | 4.1265594E-7 | 38.5 | 1 |
TAGGGAC | 1330 | 0.0 | 38.37594 | 5 |
TCGATAG | 115 | 0.0 | 38.26087 | 1 |
CGGTCTA | 230 | 0.0 | 38.26087 | 31 |
AGGGCGA | 1445 | 0.0 | 38.214535 | 6 |
CGACGGT | 225 | 0.0 | 38.133335 | 28 |
CGTTAGG | 300 | 0.0 | 38.13333 | 2 |
ATACCGG | 75 | 0.0 | 38.13333 | 2 |
GCGTAAG | 185 | 0.0 | 38.054054 | 1 |