##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545797_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1989603 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.659752221925682 31.0 31.0 33.0 30.0 34.0 2 32.07602370925255 33.0 31.0 34.0 30.0 34.0 3 32.07401074485714 33.0 31.0 34.0 30.0 34.0 4 35.80575371066489 37.0 35.0 37.0 35.0 37.0 5 35.8175520443023 37.0 35.0 37.0 35.0 37.0 6 35.87279824165927 37.0 35.0 37.0 35.0 37.0 7 36.054858682862864 37.0 35.0 37.0 35.0 37.0 8 35.9845913983845 37.0 35.0 37.0 35.0 37.0 9 37.73660524235237 39.0 38.0 39.0 35.0 39.0 10 37.510762197282574 39.0 37.0 39.0 35.0 39.0 11 37.288563597863494 39.0 37.0 39.0 34.0 39.0 12 36.624303441440325 39.0 35.0 39.0 33.0 39.0 13 36.39260093596562 39.0 35.0 39.0 33.0 39.0 14 37.39025423664922 40.0 35.0 41.0 33.0 41.0 15 37.57454426837917 40.0 35.0 41.0 33.0 41.0 16 37.64717835668724 40.0 35.0 41.0 33.0 41.0 17 37.567660985633815 39.0 35.0 41.0 33.0 41.0 18 37.444587689101795 39.0 35.0 41.0 33.0 41.0 19 37.340413137696316 39.0 35.0 41.0 33.0 41.0 20 37.143550748566426 39.0 35.0 41.0 33.0 41.0 21 37.025818215995855 38.0 35.0 41.0 32.0 41.0 22 37.051723886624615 39.0 35.0 41.0 33.0 41.0 23 37.02672141125642 38.0 35.0 41.0 33.0 41.0 24 36.966784328330824 38.0 35.0 41.0 33.0 41.0 25 36.86790430050618 38.0 35.0 41.0 32.0 41.0 26 36.756771074430425 38.0 35.0 41.0 32.0 41.0 27 36.65632792069574 38.0 35.0 41.0 32.0 41.0 28 36.60640188017408 38.0 35.0 41.0 32.0 41.0 29 36.52309983448959 38.0 35.0 41.0 31.0 41.0 30 36.39057691408789 38.0 35.0 41.0 31.0 41.0 31 36.18791889638285 38.0 35.0 41.0 31.0 41.0 32 35.97505180681774 38.0 35.0 41.0 30.0 41.0 33 35.746340350311094 38.0 35.0 41.0 29.0 41.0 34 35.51016760630136 38.0 35.0 41.0 28.0 41.0 35 35.24084905380621 38.0 35.0 40.0 26.0 41.0 36 35.061531873444096 38.0 34.0 40.0 25.0 41.0 37 34.96472612878046 38.0 34.0 40.0 24.0 41.0 38 34.83390455281782 37.0 34.0 40.0 24.0 41.0 39 34.76001342981489 37.0 34.0 40.0 23.0 41.0 40 34.56600839463953 37.0 34.0 40.0 23.0 41.0 41 34.44842714853164 37.0 34.0 40.0 23.0 41.0 42 34.41426254383412 37.0 34.0 40.0 23.0 41.0 43 34.35513567279502 37.0 34.0 40.0 23.0 41.0 44 34.205329907524266 36.0 34.0 40.0 23.0 41.0 45 34.121288015749876 36.0 34.0 40.0 23.0 41.0 46 34.10152075564824 36.0 34.0 40.0 23.0 41.0 47 34.01891231567303 36.0 33.0 40.0 23.0 41.0 48 33.9566079263049 36.0 33.0 40.0 22.0 41.0 49 33.87795203364691 36.0 33.0 40.0 22.0 41.0 50 33.71288392709501 35.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 8.0 11 7.0 12 19.0 13 25.0 14 31.0 15 86.0 16 209.0 17 423.0 18 1011.0 19 2025.0 20 3388.0 21 5225.0 22 7817.0 23 11290.0 24 16230.0 25 23522.0 26 33538.0 27 40866.0 28 42562.0 29 42184.0 30 46112.0 31 52117.0 32 62629.0 33 82345.0 34 152869.0 35 283412.0 36 119773.0 37 157442.0 38 262729.0 39 539708.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.471198525534994 21.757355613154985 26.87691966688832 16.8945261944217 2 35.5420654271229 23.853904522661054 27.569871979485356 13.034158070730694 3 29.382947251285806 24.282633269049153 32.97331176119055 13.361107718474491 4 25.839979131515182 26.495285742934644 32.565541969930685 15.099193155619488 5 23.015445794965125 30.931899479443892 31.681445997015484 14.3712087285755 6 20.16005203048045 39.65901740196411 29.53865670689077 10.642273860664666 7 83.3343636896406 4.226370788544247 10.403884594062232 2.035380927752924 8 83.85904122581238 3.753663419285154 10.345179415189865 2.0421159397125956 9 79.4425320026156 4.809954548721529 12.16579387948249 3.581719569180384 10 46.378850454085566 24.07002804076994 18.13452231425063 11.416599190893862 11 40.04924600535886 21.871147158503483 24.58354757205332 13.496059264084343 12 34.95581781893172 22.118281888396833 28.438085386883717 14.487814905787738 13 22.516753342249686 32.96501864944916 28.901142589752833 15.617085418548324 14 17.06410776421226 35.013618294705026 32.603137409824974 15.319136531257744 15 16.68006129866109 21.858481315116634 45.65332882992235 15.808128556299925 16 19.253489263938583 19.340189977598545 42.35925458495991 19.047066173502955 17 19.78374580255458 19.06068698127214 31.616458157732975 29.5391090584403 18 22.778262799161443 21.71342725156727 35.83900908874785 19.669300860523432 19 27.89380595023228 22.856167788247202 29.403504116147793 19.84652214537272 20 27.89812842059446 23.886272789094107 28.384808426605712 19.830790363705724 21 23.24996494275491 25.16089893310374 31.79217160408383 19.796964520057518 22 22.974482849091 22.582997713614223 30.558206838248637 23.884312599046144 23 19.35180033403649 26.984076722843703 29.879377946253598 23.78474499686621 24 19.73288138387407 23.433720194430748 38.41680978567081 18.416588636024372 25 19.599085847779683 24.027708040247227 35.504017635679084 20.869188476294013 26 18.3965343839952 28.309416501684005 31.477184141760944 21.816864972559852 27 18.76349201323078 28.45582761988196 32.25633455518513 20.524345811702133 28 17.096224724228904 25.8548564713664 37.40193395365809 19.646984850746605 29 18.136180936598908 23.743178915592708 37.08181984044053 21.038820307367853 30 20.63592586058626 26.348623318320286 34.32870778743297 18.686743033660484 31 26.39697467283674 24.60209398558406 29.529157324350635 19.47177401722856 32 27.822786756956035 24.229808660320675 29.453614615579088 18.4937899671442 33 26.50001030356307 24.6073211590453 28.378425243629007 20.514243293762625 34 21.009920069481197 25.62415718110598 31.297399531464315 22.068523217948506 35 21.0930522320282 25.51654777360107 32.05162034838106 21.33877964598968 36 27.47588337974963 25.59575955605214 28.261668282566927 18.66668878163131 37 21.327269812118296 30.291620991725487 29.399382690918742 18.98172650523748 38 22.39401528847715 30.427829069417367 26.363450396888222 20.81470524521726 39 22.0072547136288 29.462259556303444 27.13737363685117 21.393112093216587 40 24.332542723347323 25.406023211665847 27.82736053373462 22.434073531252213 41 20.245697257191512 24.34525882801745 28.72181033100573 26.687233583785307 42 22.942014060091385 25.15451575012704 27.121340287484486 24.782129902297093 43 22.682766360927282 25.601439081062903 27.897525285195083 23.818269272814728 44 20.3027438137156 27.8884279929212 29.83560036851573 21.97322782484747 45 18.98232964063685 32.597960497647016 26.45346835524474 21.96624150647139 46 22.126474477571655 29.315496609122523 28.373449376584176 20.184579536721646 47 21.979309440124485 27.27885914928757 28.771217172471093 21.970614238116852 48 23.40728275942487 25.244734753616676 30.55262783580443 20.795354651154025 49 21.99755428595554 24.822841541754812 32.11510034916514 21.064503823124515 50 20.22101896710047 30.684262136717727 28.59228700399024 20.50243189219156 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1682.0 1 3960.5 2 6239.0 3 21366.0 4 36493.0 5 25573.5 6 14654.0 7 14029.5 8 13405.0 9 13281.5 10 13158.0 11 12813.0 12 12468.0 13 12073.5 14 11679.0 15 10914.5 16 10150.0 17 9685.5 18 9221.0 19 8547.5 20 7874.0 21 8857.0 22 9840.0 23 10069.0 24 10298.0 25 12129.0 26 13960.0 27 15204.0 28 16448.0 29 19168.0 30 21888.0 31 27022.0 32 32156.0 33 36882.0 34 41608.0 35 49205.0 36 56802.0 37 60163.0 38 63524.0 39 74281.0 40 85038.0 41 108123.0 42 131208.0 43 149240.0 44 167272.0 45 174257.0 46 181242.0 47 174320.0 48 167398.0 49 162561.0 50 157724.0 51 148658.0 52 139592.0 53 131809.0 54 124026.0 55 116282.0 56 108538.0 57 98970.5 58 89403.0 59 79390.0 60 69377.0 61 61619.5 62 53862.0 63 45447.5 64 37033.0 65 31137.5 66 25242.0 67 20434.5 68 15627.0 69 13762.0 70 11897.0 71 10307.5 72 8718.0 73 7029.0 74 5340.0 75 4391.0 76 3442.0 77 2711.5 78 1981.0 79 1505.5 80 1030.0 81 761.5 82 493.0 83 390.0 84 287.0 85 228.0 86 169.0 87 110.0 88 51.0 89 45.0 90 39.0 91 29.0 92 19.0 93 11.0 94 3.0 95 4.0 96 5.0 97 2.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1989603.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.556722240515214 #Duplication Level Percentage of deduplicated Percentage of total 1 79.5934150673019 14.769928955779598 2 6.571235378472323 2.4388117939071554 3 2.327878177121632 1.2959336622780904 4 1.343386657183363 0.997154122358636 5 0.9204924085696373 0.8540660975164803 6 0.6476710588152141 0.7211191164992594 7 0.5214601053635785 0.6773613234319206 8 0.44028077324956333 0.6536134413625126 9 0.36313297639804826 0.6064702001451133 >10 4.619248033995383 19.893691910900106 >50 1.36764196430068 18.425892595211064 >100 1.2789572733588443 36.71970798952265 >500 0.004379053364079927 0.5544531210642021 >1k 2.736908352549954E-4 0.060945657715218704 >5k 2.736908352549954E-4 0.3123464957904959 >10k+ 2.736908352549954E-4 1.0185035165174967 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20054 1.0079397749199213 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 6150 0.3091068921789925 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01638517834965066 0.0 2 0.0 0.0 0.0 0.05865491758908687 0.0 3 0.0 0.0 0.0 0.0892640391072993 0.0 4 0.0 0.0 0.0 0.14656190204779546 0.0 5 0.0 0.0 0.0 0.3077498375304018 0.0 6 0.0 0.0 0.0 0.4520499818305461 0.0 7 0.0 0.0 0.0 0.5693598170087198 0.0 8 0.0 0.0 0.0 0.8257928843090807 0.0 9 0.0 0.0 0.0 0.953908895392699 0.0 10 0.0 0.0 0.0 1.1969724613402775 0.0 11 0.0 0.0 0.0 1.340217118691518 0.0 12 5.026128328113699E-5 0.0 0.0 1.4920061942005516 0.0 13 1.0052256656227398E-4 0.0 0.0 1.5483993540419874 0.0 14 1.0052256656227398E-4 0.0 0.0 1.5684033447878798 0.0 15 1.0052256656227398E-4 0.0 0.0 1.5999171694051526 0.0 16 1.0052256656227398E-4 0.0 0.0 1.6546014456150298 0.0 17 1.0052256656227398E-4 0.0 0.0 1.7194887623309776 0.0 18 1.0052256656227398E-4 0.0 0.0 1.8218207350913724 0.0 19 1.0052256656227398E-4 0.0 0.0 1.8628339422487803 0.0 20 1.0052256656227398E-4 0.0 0.0 1.9159601186769422 0.0 21 1.0052256656227398E-4 0.0 0.0 1.9812495256591391 0.0 22 1.0052256656227398E-4 0.0 0.0 2.0470415454741473 0.0 23 1.0052256656227398E-4 0.0 0.0 2.1188146579996108 0.0 24 1.0052256656227398E-4 0.0 0.0 2.176313566073232 0.0 25 1.0052256656227398E-4 0.0 0.0 2.223157082091251 0.0 26 1.0052256656227398E-4 0.0 0.0 2.273267581522545 0.0 27 1.0052256656227398E-4 0.0 0.0 2.333882689159596 0.0 28 1.0052256656227398E-4 0.0 0.0 2.388918794352441 0.0 29 1.0052256656227398E-4 0.0 0.0 2.462149484093058 0.0 30 1.0052256656227398E-4 0.0 0.0 2.5471915754047414 0.0 31 1.0052256656227398E-4 0.0 0.0 2.6191154717800487 0.0 32 1.0052256656227398E-4 0.0 0.0 2.689682313506765 0.0 33 1.0052256656227398E-4 0.0 0.0 2.7615056873155095 0.0 34 1.0052256656227398E-4 0.0 0.0 2.839410676401272 0.0 35 1.0052256656227398E-4 0.0 0.0 2.9294788960410694 0.0 36 1.0052256656227398E-4 0.0 0.0 3.003061414764654 0.0 37 1.0052256656227398E-4 0.0 0.0 3.0877014158100886 0.0 38 1.0052256656227398E-4 0.0 0.0 3.1980249326121846 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCATA 25 4.4440174E-5 44.0 23 CTATACG 25 4.4440174E-5 44.0 1 GTTAGCG 40 8.3182385E-9 44.0 1 GTTACGC 25 4.4440174E-5 44.0 38 CGTTTTT 10870 0.0 41.71297 1 CACGACG 220 0.0 40.0 26 CGTAAGG 265 0.0 39.84906 2 ATCGACG 50 1.3496901E-9 39.600002 1 GTTACGG 230 0.0 39.217392 2 CGTGCGG 275 0.0 39.2 2 ATTAACG 130 0.0 38.92308 1 TATAGCG 40 4.1265594E-7 38.5 1 TAGGGAC 1330 0.0 38.37594 5 TCGATAG 115 0.0 38.26087 1 CGGTCTA 230 0.0 38.26087 31 AGGGCGA 1445 0.0 38.214535 6 CGACGGT 225 0.0 38.133335 28 CGTTAGG 300 0.0 38.13333 2 ATACCGG 75 0.0 38.13333 2 GCGTAAG 185 0.0 38.054054 1 >>END_MODULE