##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545794_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1074807 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.569062166509894 31.0 31.0 33.0 30.0 34.0 2 31.74877908312841 31.0 31.0 34.0 30.0 34.0 3 31.77476979587963 31.0 31.0 34.0 30.0 34.0 4 35.647390647809324 37.0 35.0 37.0 33.0 37.0 5 27.09064045917081 35.0 25.0 37.0 0.0 37.0 6 31.332384325744062 35.0 26.0 37.0 17.0 37.0 7 15.036825216062047 0.0 0.0 32.0 0.0 37.0 8 25.153241465677095 17.0 17.0 35.0 17.0 37.0 9 33.36492039966245 32.0 32.0 37.0 28.0 39.0 10 36.19137017157499 37.0 35.0 39.0 32.0 39.0 11 37.12583096314036 39.0 37.0 39.0 34.0 39.0 12 36.8380034741121 39.0 35.0 39.0 33.0 39.0 13 36.182426240245924 38.0 35.0 39.0 32.0 39.0 14 37.480872379878434 40.0 35.0 41.0 33.0 41.0 15 37.838559853071295 40.0 35.0 41.0 33.0 41.0 16 37.96847899204229 40.0 35.0 41.0 33.0 41.0 17 38.00803307012329 40.0 35.0 41.0 34.0 41.0 18 37.98725724711506 40.0 36.0 41.0 34.0 41.0 19 37.90961912231684 40.0 36.0 41.0 34.0 41.0 20 37.904357712593985 40.0 35.0 41.0 34.0 41.0 21 37.73495520591139 40.0 35.0 41.0 33.0 41.0 22 37.65524601160953 39.0 35.0 41.0 33.0 41.0 23 37.56550617924893 39.0 35.0 41.0 33.0 41.0 24 37.432324128890116 39.0 35.0 41.0 33.0 41.0 25 37.24999092860393 39.0 35.0 41.0 33.0 41.0 26 37.026700607643974 38.0 35.0 40.0 33.0 41.0 27 36.75694147879573 38.0 35.0 40.0 32.0 41.0 28 36.83505782898697 38.0 35.0 40.0 32.0 41.0 29 36.85270750934819 38.0 35.0 40.0 32.0 41.0 30 36.63615700307125 38.0 35.0 40.0 32.0 41.0 31 36.396732622694124 38.0 35.0 40.0 31.0 41.0 32 36.11663489352042 38.0 35.0 40.0 31.0 41.0 33 35.90358268972941 38.0 35.0 40.0 30.0 41.0 34 35.70834949902634 38.0 35.0 40.0 30.0 41.0 35 35.55357566521245 38.0 35.0 40.0 29.0 41.0 36 35.34965812466796 38.0 34.0 40.0 29.0 41.0 37 35.13792615790556 38.0 34.0 40.0 27.0 41.0 38 34.99135472694167 37.0 34.0 40.0 27.0 41.0 39 35.008568980291344 38.0 34.0 40.0 27.0 41.0 40 34.736182402980255 37.0 34.0 40.0 26.0 41.0 41 34.59317440247412 37.0 34.0 40.0 25.0 40.0 42 34.59973465003484 37.0 34.0 40.0 25.0 41.0 43 34.49053923169462 37.0 33.0 40.0 25.0 41.0 44 34.270545316507985 36.0 33.0 40.0 24.0 40.0 45 34.01107547680653 36.0 33.0 39.0 23.0 40.0 46 34.0069854401767 36.0 33.0 39.0 23.0 40.0 47 33.86522045353259 36.0 33.0 39.0 23.0 40.0 48 33.838223978816664 36.0 33.0 39.0 23.0 40.0 49 33.77041924736255 36.0 33.0 39.0 24.0 40.0 50 33.782837290788024 36.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 5.0 15 21.0 16 45.0 17 152.0 18 378.0 19 835.0 20 1561.0 21 2578.0 22 4080.0 23 6324.0 24 9858.0 25 14281.0 26 18031.0 27 19289.0 28 19744.0 29 22162.0 30 26927.0 31 36772.0 32 52344.0 33 103006.0 34 96307.0 35 112598.0 36 130268.0 37 252163.0 38 119109.0 39 25967.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.918760298360542 23.821579130020552 29.419886547073105 15.839774024545802 2 32.856596579664995 24.787985191760008 29.870944271855322 12.484473956719672 3 28.849923753753 23.11680143504834 34.76940511180147 13.263869699397194 4 25.008117736486646 27.28685243025027 33.15144021205668 14.553589621206411 5 17.07664724922707 47.681955923249475 24.583669440187865 10.657727387335587 6 19.250432868412652 40.38492492140449 29.85363883934511 10.511003370837741 7 39.56263775729038 55.673809344375314 3.956338207696824 0.807214690637482 8 88.87716585396261 2.1937892105280294 7.532236020048251 1.3968089154611014 9 85.85662356125331 3.4874168106460046 8.666951368943447 1.9890082591572253 10 56.43738829389835 22.10145635448969 12.810392935661937 8.650762415950027 11 52.77207908024417 16.177136918535144 19.36682585803777 11.683958143182915 12 46.08334333512901 19.287555812345843 22.637552602467235 11.991548250057917 13 19.509176996428195 45.65424304084361 23.219238430713606 11.617341532014585 14 13.265637458632106 47.3030041672598 27.648405713770007 11.78295266033809 15 11.212059467420662 21.13039829476362 55.198468190102965 12.459074047712752 16 13.28266377126312 14.905745868793188 53.82743134348772 17.984159016455976 17 13.912916458489757 15.026790856404917 29.708217382283518 41.35207530282181 18 20.1482684798294 21.73339027378869 37.68564960965085 20.43269163673106 19 29.2755815695283 22.562748474842458 26.787413926407254 21.374256029221993 20 31.632004629668398 21.555125710941592 25.488017848785876 21.324851810604137 21 20.419014762650413 28.096672239760256 30.737611496761748 20.74670150082759 22 22.19961351200727 22.227246380047767 26.77029457381651 28.80284553412845 23 17.423500219109105 30.892243909836836 25.05277691715815 26.63147895389591 24 18.6852151130389 22.42477021455945 42.35318526954141 16.536829402860235 25 15.844612102451883 22.70323881403824 40.98940553978528 20.462743543724592 26 15.358106153011658 35.06071322572332 28.252421132352133 21.328759488912894 27 16.334653570361933 34.94925135396401 30.461654976195728 18.254440099478327 28 13.521125188057018 27.62672740315238 42.65389041939623 16.198256989394373 29 14.635650865690305 23.163135334995026 40.91981164990552 21.28140214940915 30 17.39949590949817 29.509111868456383 34.55141248614868 18.539979735896768 31 31.146242999906033 24.522635226603473 25.387534692274986 18.94358708121551 32 31.37270226189446 24.669824442899984 27.8635141006711 16.09395919453446 33 28.87048558485384 25.231320599884445 26.168419074308225 19.72977474095349 34 18.557285168406978 26.821838711508207 29.419700467153636 25.20117565293118 35 19.11710660611626 23.842699200879785 33.14827685342578 23.891917339578175 36 33.845518311659674 20.64538098467911 27.554714474319574 17.95438622934164 37 20.073371312244895 31.40228896908933 30.097031374004825 18.427308344660947 38 19.829606617746258 33.03914098065978 23.90410557430311 23.227146827290852 39 19.98312255130456 30.526038628330483 27.879982173543716 21.610856646821244 40 24.11046820498936 24.47248668830776 25.718756948921996 25.698288157780887 41 16.847582868366136 22.084988281617072 28.56661707636813 32.500811773648664 42 22.59987141877565 24.72713705809508 24.281010451178677 28.39198107195059 43 22.686119461447497 25.143304797977684 26.417952246310268 25.752623494264554 44 19.77582952102098 30.33093383277184 28.99841552948576 20.89482111672142 45 16.906198042997485 38.562458190168094 22.244086612759315 22.287257154075103 46 23.59223562928042 30.97551467379725 27.114821544705237 18.317428152217097 47 22.600987898292438 26.846215180958072 26.34780011667211 24.204996804077382 48 23.789945543711568 23.174765329961566 30.68039192152638 22.35489720480049 49 21.44440815886015 21.6510499094256 33.53188060740207 23.37266132431218 50 20.533826072960075 32.073758358477384 26.740242666822972 20.65217290173957 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 740.0 1 1069.5 2 1399.0 3 6191.5 4 10984.0 5 8253.5 6 5523.0 7 6056.0 8 6589.0 9 7198.5 10 7808.0 11 7976.0 12 8144.0 13 7541.5 14 6939.0 15 6448.5 16 5958.0 17 5405.5 18 4853.0 19 4613.5 20 4374.0 21 4338.0 22 4302.0 23 4568.5 24 4835.0 25 5566.5 26 6298.0 27 6961.5 28 7625.0 29 8900.0 30 10175.0 31 12575.0 32 14975.0 33 17055.0 34 19135.0 35 20152.0 36 21169.0 37 27738.0 38 34307.0 39 54329.5 40 74352.0 41 95709.5 42 117067.0 43 120829.0 44 124591.0 45 119787.0 46 114983.0 47 107107.5 48 99232.0 49 93538.0 50 87844.0 51 77151.5 52 66459.0 53 58657.0 54 50855.0 55 45260.5 56 39666.0 57 35874.0 58 32082.0 59 28733.0 60 25384.0 61 22229.0 62 19074.0 63 16166.5 64 13259.0 65 11006.5 66 8754.0 67 7377.5 68 6001.0 69 5104.5 70 4208.0 71 3316.0 72 2424.0 73 1850.5 74 1277.0 75 964.0 76 651.0 77 465.5 78 280.0 79 211.5 80 143.0 81 100.5 82 58.0 83 35.5 84 13.0 85 10.5 86 8.0 87 5.0 88 2.0 89 2.5 90 3.0 91 2.5 92 2.0 93 2.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1074807.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.120902330470734 #Duplication Level Percentage of deduplicated Percentage of total 1 74.27707151422437 15.687987728453232 2 6.179390090765558 2.610285891378761 3 2.6198305606873316 1.6599955618397852 4 1.6614312694273312 1.403637102814587 5 1.207297137274659 1.2749602460117497 6 0.9618507990990722 1.2189094070554038 7 0.8242232628684553 1.2185837323482585 8 0.6814360817002137 1.1514035940839111 9 0.6432900177832805 1.2228179072190706 >10 9.240464252113563 44.891069480570515 >50 1.5280410166917602 21.428641478193317 >100 0.17336856432815037 5.2705114850148105 >500 4.610866072557191E-4 0.061255575093760464 >1k 0.0018443464290228764 0.8999408099227988 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3774 0.3511328080297207 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2209 0.2055252710486627 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1718 0.15984265082010074 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1540 0.14328153798775037 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.011071755208144346 0.0 2 0.0 0.0 0.0 0.05470749632259559 0.0 3 0.0 0.0 0.0 0.07666492681941968 0.0 4 0.0 0.0 0.0 0.11509043018886181 0.0 5 0.0 0.0 0.0 0.18766159878006006 0.0 6 0.0 0.0 0.0 0.32005746147913067 0.0 7 0.0 0.0 0.0 0.40044398668784253 0.0 8 0.0 0.0 0.0 0.8027487725703313 0.0 9 0.0 0.0 0.0 0.9710580597260717 0.0 10 0.0 0.0 0.0 1.240408743151096 0.0 11 0.0 0.0 0.0 1.5070612677438833 0.0 12 0.0 0.0 0.0 1.7380794877591976 0.0 13 0.0 0.0 0.0 1.8352132057197246 0.0 14 0.0 0.0 0.0 1.8638695133172747 0.0 15 0.0 0.0 0.0 1.9154136510089719 0.0 16 0.0 0.0 0.0 2.0423201560838367 0.0 17 0.0 0.0 0.0 2.1869972934675714 0.0 18 0.0 0.0 0.0 2.4215510319527134 0.0 19 0.0 0.0 0.0 2.505566115590985 0.0 20 0.0 0.0 0.0 2.5959079164910537 0.0 21 0.0 0.0 0.0 2.7189067432571616 0.0 22 0.0 0.0 0.0 2.8315781344929833 0.0 23 0.0 0.0 0.0 2.9810003098230657 0.0 24 0.0 0.0 0.0 3.0734820297969776 0.0 25 0.0 0.0 0.0 3.1484722373412155 0.0 26 0.0 0.0 0.0 3.228021402912337 0.0 27 0.0 0.0 0.0 3.303848970094166 0.0 28 0.0 0.0 0.0 3.3847937350612716 0.0 29 0.0 0.0 0.0 3.4785780144714353 0.0 30 0.0 0.0 0.0 3.5994369221637 0.0 31 0.0 0.0 0.0 3.711829193520325 0.0 32 0.0 0.0 0.0 3.8017988345814646 0.0 33 0.0 0.0 0.0 3.896792633468148 0.0 34 0.0 0.0 0.0 3.996624510260912 0.0 35 0.0 0.0 0.0 4.143255486799025 0.0 36 0.0 0.0 0.0 4.246529842101884 0.0 37 0.0 0.0 0.0 4.3536188357537675 0.0 38 0.0 0.0 0.0 4.456055831419036 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGATC 75 0.0 44.000004 10 TATTTCG 20 7.856254E-4 44.0 10 TATCACC 20 7.856254E-4 44.0 44 AACCGAT 20 7.856254E-4 44.0 19 ATCTAGC 25 4.4426462E-5 44.0 10 CACGGTA 20 7.856254E-4 44.0 18 GCGAAAA 25 4.4426462E-5 44.0 1 TTTCGTA 25 4.4426462E-5 44.0 1 CGTTGAC 25 4.4426462E-5 44.0 42 TAGCGAA 80 0.0 44.0 1 AAGCGTA 30 2.527564E-6 44.0 36 GTTACGT 30 2.527564E-6 44.0 25 GTTACGA 20 7.856254E-4 44.0 37 ACCTATC 30 2.527564E-6 44.0 3 TACGCAA 30 2.527564E-6 44.0 1 GTTCGAC 20 7.856254E-4 44.0 38 TACGATT 20 7.856254E-4 44.0 15 TGCGATA 20 7.856254E-4 44.0 1 GTCGTAA 40 8.310963E-9 44.0 1 TATTACG 25 4.4426462E-5 44.0 1 >>END_MODULE