SRR1545791_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545791_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	302619
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	755	0.24948863091874604	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	632	0.20884346323264566	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	507	0.167537398510999	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACGA	35	1.2079545E-7	45.000004	24
CGTTGAT	35	1.2079545E-7	45.000004	25
AGTGCAA	35	1.2079545E-7	45.000004	1
TGAGGTA	35	1.2079545E-7	45.000004	5
CGGTCTA	35	1.2079545E-7	45.000004	31
TCGCGGG	35	1.2079545E-7	45.000004	3
TTTACGG	20	7.0250407E-4	45.0	2
TAGGTTA	20	7.0250407E-4	45.0	6
ATTGTTA	20	7.0250407E-4	45.0	1
ATTCGAA	20	7.0250407E-4	45.0	1
AAGGTAT	50	2.1827873E-11	45.0	6
GGATATC	25	3.8839724E-5	45.0	8
TAACGGG	55	1.8189894E-12	45.0	3
TATGCCA	40	6.7866495E-9	45.0	10
CCGCTCG	20	7.0250407E-4	45.0	19
TGCATAG	55	1.8189894E-12	45.0	2
ACTAGGT	20	7.0250407E-4	45.0	4
GTAGCCG	25	3.8839724E-5	45.0	43
TACGCAA	20	7.0250407E-4	45.0	1
GTTCGCT	20	7.0250407E-4	45.0	38