##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545790_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1224814 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.519439686352378 31.0 31.0 33.0 30.0 34.0 2 31.705140535624185 31.0 31.0 34.0 30.0 34.0 3 31.755915592081738 31.0 31.0 34.0 30.0 34.0 4 35.65644987728749 37.0 35.0 37.0 33.0 37.0 5 27.16309660079 35.0 26.0 37.0 0.0 37.0 6 31.367510495471148 35.0 28.0 37.0 17.0 37.0 7 14.953526821215302 0.0 0.0 32.0 0.0 37.0 8 25.080700416553043 17.0 17.0 35.0 17.0 37.0 9 33.21315889596298 32.0 32.0 37.0 28.0 39.0 10 36.008874816910975 37.0 35.0 39.0 32.0 39.0 11 36.99126397967365 39.0 37.0 39.0 34.0 39.0 12 37.01660252087256 39.0 35.0 39.0 33.0 39.0 13 36.57020331250296 39.0 35.0 39.0 33.0 39.0 14 37.85137743363482 40.0 36.0 41.0 33.0 41.0 15 38.13407178559357 40.0 37.0 41.0 33.0 41.0 16 38.19303175829146 40.0 36.0 41.0 33.0 41.0 17 38.20794667598509 40.0 36.0 41.0 34.0 41.0 18 38.198828556825774 40.0 36.0 41.0 34.0 41.0 19 38.14796532371446 40.0 36.0 41.0 34.0 41.0 20 38.182919202425836 40.0 36.0 41.0 34.0 41.0 21 38.04778439828415 40.0 36.0 41.0 34.0 41.0 22 37.96943290981324 40.0 36.0 41.0 34.0 41.0 23 37.883503127821854 40.0 36.0 41.0 34.0 41.0 24 37.74107415493291 40.0 35.0 41.0 33.0 41.0 25 37.56059777239646 39.0 35.0 41.0 33.0 41.0 26 37.33410052465109 39.0 35.0 40.0 33.0 41.0 27 37.11840491699148 39.0 35.0 40.0 33.0 41.0 28 37.15749493392466 39.0 35.0 40.0 33.0 41.0 29 37.07525550818328 39.0 35.0 40.0 32.0 41.0 30 36.870088029692674 39.0 35.0 40.0 32.0 41.0 31 36.7097151077633 38.0 35.0 40.0 31.0 41.0 32 36.49939011147815 38.0 35.0 40.0 31.0 41.0 33 36.30712500020411 38.0 35.0 40.0 31.0 41.0 34 36.08516476787496 38.0 35.0 40.0 30.0 41.0 35 35.88593696675577 38.0 35.0 40.0 30.0 41.0 36 35.70333944582606 38.0 35.0 40.0 29.0 41.0 37 35.58628085570544 38.0 35.0 40.0 29.0 41.0 38 35.397359925670344 38.0 34.0 40.0 28.0 41.0 39 35.3392678398516 38.0 34.0 40.0 28.0 41.0 40 35.10062670740211 38.0 34.0 40.0 27.0 41.0 41 34.881501191201274 38.0 34.0 40.0 26.0 40.0 42 34.897341963759395 38.0 34.0 40.0 26.0 41.0 43 34.782680472300285 37.0 34.0 40.0 26.0 41.0 44 34.581649948481974 37.0 34.0 40.0 26.0 40.0 45 34.34581087414089 37.0 33.0 40.0 25.0 40.0 46 34.28904470393056 37.0 33.0 39.0 24.0 40.0 47 34.13349618799263 36.0 33.0 39.0 24.0 40.0 48 34.01893675284574 36.0 33.0 39.0 24.0 40.0 49 33.91055376571463 36.0 33.0 39.0 24.0 40.0 50 33.98052765562771 36.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 1.0 13 5.0 14 16.0 15 34.0 16 76.0 17 180.0 18 369.0 19 834.0 20 1560.0 21 2605.0 22 4059.0 23 6463.0 24 10000.0 25 14046.0 26 18208.0 27 20163.0 28 21471.0 29 24439.0 30 29818.0 31 39573.0 32 55017.0 33 95851.0 34 102033.0 35 128414.0 36 172928.0 37 308102.0 38 134178.0 39 34369.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.607948635466286 23.029129320860147 27.686326250353115 14.676595793320454 2 34.49380885587526 23.198297864002207 30.03574420279324 12.272149077329292 3 30.648571946434316 23.24475389732645 33.262111634909466 12.844562521329769 4 27.12420008262479 26.877060516943796 30.746382716069544 15.252356684361871 5 17.33855099631454 47.88751598201849 23.556229762233286 11.217703259433677 6 20.38415628822009 41.898443355480914 28.099940072533464 9.617460283765535 7 39.36842655292967 55.82210849973956 3.8669544926821544 0.9425104546486242 8 87.76589751586772 2.6635064589398882 7.611196475546492 1.9593995496459053 9 83.61408344450668 4.335760368513097 9.240015218637279 2.8101409683429486 10 46.38581858143359 26.173933348247164 15.029547343515015 12.410700726804233 11 40.58436627928812 22.405606075698024 22.126543295553446 14.883484349460407 12 36.70238909744663 21.29547833385314 26.63824874634026 15.363883822359966 13 23.55916898402533 32.6873304844654 28.083611062577663 15.669889468931608 14 18.371524166118284 35.877202579330415 29.998187479894906 15.753085774656398 15 16.671021069321547 23.338890639721622 43.31637293499258 16.67371535596425 16 19.207651120904888 18.56061410140642 41.96629039184725 20.26544438584144 17 19.54517175669122 18.862129270240217 30.173805981969508 31.418892991099057 18 22.90159975310537 22.928787554681772 33.25166106853775 20.917951623675105 19 28.632837312440913 24.512130005045666 26.6528632102507 20.202169472262728 20 29.648420086641725 23.704007302333252 25.420022958587996 21.227549652437023 21 24.80997114663941 25.820573572803706 29.76190670583452 19.607548574722365 22 23.349096270944 22.667605040438794 27.382688310225063 26.600610378392147 23 20.878598709681633 28.195464780774877 26.59554838530585 24.33038812423764 24 21.255472259461435 25.10781228823315 34.83541174415054 18.80130370815487 25 21.196524533521007 23.656898108610775 33.34571616588315 21.800861191985067 26 19.21467259518588 29.407567189793717 27.964327644850567 23.41343257016984 27 19.330363630722704 28.920554467862058 30.393349520825204 21.35573238059003 28 18.33772311550978 26.08689972518276 36.25276980831375 19.3226073509937 29 18.858210307850825 24.76947520194903 35.07863234744214 21.293682142758 30 21.73954575960105 26.228472241499524 32.28816783609593 19.743814162803496 31 28.992565401767123 23.994010519148212 26.590404747169778 20.423019331914887 32 28.513962119962706 24.719345141384732 27.64199298832313 19.124699750329437 33 27.27418203906879 23.809411061597924 27.086561714676677 21.82984518465661 34 21.657900709822062 25.94777656035937 28.900959655915102 23.493363073903467 35 21.03935781269646 24.647579142629002 30.97147811831021 23.341584926364327 36 29.29097805870932 24.074675828329852 26.537906980161885 20.096439132798942 37 21.456155791818183 29.762559866232753 27.37305419435114 21.40823014759792 38 21.969703154928013 30.70727473722541 25.120140690749782 22.2028814170968 39 21.769999363168612 27.699471103367536 26.28056178325852 24.249967750205336 40 24.198857949043692 24.222045143180924 27.35941947103805 24.21967743673733 41 20.302347948341545 23.517285073488708 28.08801989526573 28.092347082904016 42 22.681403053851444 25.757135369125432 25.48329787216671 26.07816370485641 43 22.430507815880617 24.850630381429344 26.98948575048946 25.729376052200582 44 21.515185162808397 26.989404105439686 29.15724346717134 22.33816726458058 45 20.382196807025394 31.283362208465938 25.790609839534817 22.54383114497385 46 23.22899640271911 28.349610634757603 28.033970872312043 20.38742209021125 47 22.787949843813017 26.33844812355182 27.50205337300194 23.371548659633216 48 22.69528271231387 24.972934665998267 29.78664515591755 22.545137465770313 49 22.192757430924207 23.99825606173672 31.319775900667366 22.489210606671705 50 21.092345450003023 28.484161676793374 27.929220273445598 22.494272599758002 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 600.0 1 1189.0 2 1778.0 3 8133.5 4 14489.0 5 10495.0 6 6501.0 7 6596.5 8 6692.0 9 6879.5 10 7067.0 11 7002.5 12 6938.0 13 6681.5 14 6425.0 15 6121.0 16 5817.0 17 5496.0 18 5175.0 19 5093.5 20 5012.0 21 5167.5 22 5323.0 23 5819.0 24 6315.0 25 7359.0 26 8403.0 27 9478.0 28 10553.0 29 12720.5 30 14888.0 31 17703.5 32 20519.0 33 23185.0 34 25851.0 35 28401.5 36 30952.0 37 36845.0 38 42738.0 39 54503.5 40 66269.0 41 80556.5 42 94844.0 43 99404.0 44 103964.0 45 105369.5 46 106775.0 47 106237.5 48 105700.0 49 101744.5 50 97789.0 51 88697.5 52 79606.0 53 73027.5 54 66449.0 55 62166.0 56 57883.0 57 55089.0 58 52295.0 59 48924.0 60 45553.0 61 40588.0 62 35623.0 63 30613.5 64 25604.0 65 21906.0 66 18208.0 67 16008.0 68 13808.0 69 11897.5 70 9987.0 71 8027.0 72 6067.0 73 4554.0 74 3041.0 75 2260.0 76 1479.0 77 1257.0 78 1035.0 79 760.5 80 486.0 81 325.5 82 165.0 83 117.0 84 69.0 85 55.5 86 42.0 87 27.5 88 13.0 89 12.0 90 11.0 91 11.0 92 11.0 93 6.0 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1224814.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.821893756678488 #Duplication Level Percentage of deduplicated Percentage of total 1 71.7084323999737 19.950643876900298 2 7.652193152678121 4.257970097987867 3 3.6339832481310674 3.0331288752915593 4 2.287870463701542 2.5461155588058824 5 1.6842353866695532 2.342930899457931 6 1.3637460015627587 2.27651978199445 7 1.1085439413274896 2.1589254232156136 8 0.9469341125481069 2.107640021911045 9 0.7996851107499557 2.0023878771074646 >10 8.328793318240756 48.02120029346561 >50 0.4319256079310882 7.524708442316606 >100 0.04899140809585881 2.27469006667484 >500 0.003332748849998951 0.5415972884110237 >1k 0.0013330995399995803 0.9615414964599068 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4834 0.39467217063162247 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2090 0.17063815403808252 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1889 0.15422749903250618 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1557 0.12712134250588253 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.013308143113974857 0.0 2 0.0 0.0 0.0 0.047762354120707305 0.0 3 8.164504977898685E-5 0.0 0.0 0.06286668832981987 0.0 4 8.164504977898685E-5 0.0 0.0 0.08556401216837822 0.0 5 8.164504977898685E-5 0.0 0.0 0.14630792920394445 0.0 6 8.164504977898685E-5 0.0 0.0 0.26902043902176165 0.0 7 8.164504977898685E-5 0.0 0.0 0.3459300759135673 0.0 8 8.164504977898685E-5 0.0 0.0 0.7902424368108137 0.0 9 8.164504977898685E-5 0.0 0.0 0.9909259691675634 0.0 10 8.164504977898685E-5 0.0 0.0 1.3235479019671559 0.0 11 8.164504977898685E-5 0.0 0.0 1.6120815078860953 0.0 12 8.164504977898685E-5 0.0 0.0 1.8473825413491354 0.0 13 8.164504977898685E-5 0.0 0.0 1.949275563473311 0.0 14 8.164504977898685E-5 0.0 0.0 1.9856892556747392 0.0 15 8.164504977898685E-5 0.0 0.0 2.0405547291262183 0.0 16 8.164504977898685E-5 0.0 0.0 2.1622874983466875 0.0 17 8.164504977898685E-5 0.0 0.0 2.296430315133563 0.0 18 8.164504977898685E-5 0.0 0.0 2.5190763658808604 0.0 19 8.164504977898685E-5 0.0 0.0 2.6094574359861986 0.0 20 8.164504977898685E-5 0.0 0.0 2.706451755123635 0.0 21 8.164504977898685E-5 0.0 0.0 2.845819855096366 0.0 22 8.164504977898685E-5 0.0 0.0 2.9786563510867774 0.0 23 8.164504977898685E-5 0.0 0.0 3.1338635907166315 0.0 24 8.164504977898685E-5 0.0 0.0 3.2573925510322383 0.0 25 8.164504977898685E-5 0.0 0.0 3.350304617680725 0.0 26 8.164504977898685E-5 0.0 0.0 3.4450945204741292 0.0 27 8.164504977898685E-5 0.0 0.0 3.5485387985441053 0.0 28 8.164504977898685E-5 0.0 0.0 3.657208359799937 0.0 29 8.164504977898685E-5 0.0 0.0 3.774532296332341 0.0 30 8.164504977898685E-5 0.0 0.0 3.9214933859345176 0.0 31 8.164504977898685E-5 0.0 0.0 4.048696373490179 0.0 32 8.164504977898685E-5 0.0 0.0 4.16226463773275 0.0 33 8.164504977898685E-5 0.0 0.0 4.284405632202114 0.0 34 8.164504977898685E-5 0.0 0.0 4.410955459359544 0.0 35 8.164504977898685E-5 0.0 0.0 4.57163291732459 0.0 36 8.164504977898685E-5 0.0 0.0 4.696631488536219 0.0 37 8.164504977898685E-5 0.0 0.0 4.826447117684808 0.0 38 8.164504977898685E-5 0.0 0.0 4.979286650871071 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATTA 20 7.856685E-4 44.0 12 CTATACG 20 7.856685E-4 44.0 1 TCGCTAA 20 7.856685E-4 44.0 17 AATTCGC 70 0.0 44.0 13 CATACGT 20 7.856685E-4 44.0 30 ATCGGTA 20 7.856685E-4 44.0 44 CGCAATA 20 7.856685E-4 44.0 33 CGATACG 30 2.5278532E-6 44.0 12 CGTTTTA 2535 0.0 43.566074 1 TTACGGG 280 0.0 41.642857 3 CGCATGG 75 0.0 41.066666 2 CGTTATT 1495 0.0 41.056858 1 TAGGCCG 70 0.0 40.857143 6 GTTTTAT 2995 0.0 40.621037 2 ACACGAC 120 0.0 40.333332 26 TGCGTAA 60 3.6379788E-12 40.333332 1 CACGACC 115 0.0 40.173916 27 CGACTAG 55 7.8216544E-11 40.000004 2 GTACGGG 355 0.0 39.661972 3 TTACTGG 1850 0.0 39.48108 40 >>END_MODULE