SRR1545789_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545789_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	468814
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1216	0.25937791960137707	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1099	0.2344213270081525	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	585	0.12478296296612303	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	20	7.0290075E-4	45.000004	2
CCTAGTG	20	7.0290075E-4	45.000004	13
GCGAATA	35	1.2098644E-7	45.000004	1
TAACGCC	20	7.0290075E-4	45.000004	12
CGTTCGA	20	7.0290075E-4	45.000004	14
GTCAACG	20	7.0290075E-4	45.000004	1
TTCGAAT	20	7.0290075E-4	45.000004	16
AGTACGG	20	7.0290075E-4	45.000004	2
TCAACGG	20	7.0290075E-4	45.000004	2
TTAGGCG	45	3.8380676E-10	45.0	5
TAACGGG	50	2.1827873E-11	45.0	3
CGTTTTA	730	0.0	44.075344	1
GTAAGGC	80	0.0	42.187504	4
GTTTTAT	860	0.0	41.598835	2
ACTAACC	125	0.0	41.399998	14
ACGGTCT	125	0.0	41.399998	30
CACGACG	120	0.0	41.249996	26
AGGACTA	220	0.0	40.909092	7
AGGCGAT	385	0.0	40.909092	7
CGTTTTT	1100	0.0	40.909092	1