##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545788_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1129850 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.51047041642696 31.0 31.0 33.0 30.0 34.0 2 31.696708412621145 31.0 31.0 34.0 30.0 34.0 3 31.755262202947293 31.0 31.0 34.0 30.0 34.0 4 35.663617294331104 37.0 35.0 37.0 33.0 37.0 5 27.106245961853343 35.0 25.0 37.0 0.0 37.0 6 31.335764924547508 35.0 26.0 37.0 17.0 37.0 7 15.034837367792186 0.0 0.0 32.0 0.0 37.0 8 25.125125459131745 17.0 17.0 35.0 17.0 37.0 9 33.24440943488074 32.0 32.0 37.0 28.0 39.0 10 36.03498606009647 37.0 35.0 39.0 32.0 39.0 11 36.987493915121476 39.0 37.0 39.0 34.0 39.0 12 37.00182767624021 39.0 35.0 39.0 33.0 39.0 13 36.52001239102536 39.0 35.0 39.0 33.0 39.0 14 37.73734389520733 40.0 36.0 41.0 33.0 41.0 15 38.029919015798555 40.0 36.0 41.0 33.0 41.0 16 38.114841793158384 40.0 36.0 41.0 33.0 41.0 17 38.14685135194937 40.0 36.0 41.0 34.0 41.0 18 38.13864760808957 40.0 36.0 41.0 34.0 41.0 19 38.08436960658494 40.0 36.0 41.0 34.0 41.0 20 38.119281320529275 40.0 36.0 41.0 34.0 41.0 21 38.00228348895871 40.0 36.0 41.0 34.0 41.0 22 37.9449378236049 40.0 36.0 41.0 34.0 41.0 23 37.853990352701686 40.0 35.0 41.0 34.0 41.0 24 37.723388060362 40.0 35.0 41.0 33.0 41.0 25 37.531577643049964 39.0 35.0 41.0 33.0 41.0 26 37.29539938929946 39.0 35.0 40.0 33.0 41.0 27 37.09238482984467 39.0 35.0 40.0 32.0 41.0 28 37.12528300216843 39.0 35.0 40.0 32.0 41.0 29 37.0312917643935 39.0 35.0 40.0 32.0 41.0 30 36.82531752002478 38.0 35.0 40.0 32.0 41.0 31 36.635439217595255 38.0 35.0 40.0 31.0 41.0 32 36.454356773022965 38.0 35.0 40.0 31.0 41.0 33 36.26604505022791 38.0 35.0 40.0 30.0 41.0 34 36.01388325883967 38.0 35.0 40.0 30.0 41.0 35 35.8275611806877 38.0 35.0 40.0 30.0 41.0 36 35.63400982431296 38.0 35.0 40.0 29.0 41.0 37 35.52568748063902 38.0 35.0 40.0 29.0 41.0 38 35.29199451254591 38.0 34.0 40.0 28.0 41.0 39 35.23214497499668 38.0 34.0 40.0 27.0 41.0 40 34.97413461963978 38.0 34.0 40.0 26.0 41.0 41 34.76193477010223 37.0 34.0 40.0 26.0 40.0 42 34.769504801522324 37.0 34.0 40.0 26.0 40.0 43 34.64105146700889 37.0 34.0 40.0 26.0 40.0 44 34.443347346992965 37.0 33.0 40.0 25.0 40.0 45 34.24379873434527 36.0 33.0 39.0 24.0 40.0 46 34.21019073328318 36.0 33.0 39.0 24.0 40.0 47 34.010924458998986 36.0 33.0 39.0 24.0 40.0 48 33.907417798822856 36.0 33.0 39.0 24.0 40.0 49 33.786675222374654 36.0 33.0 39.0 24.0 40.0 50 33.85571536044608 36.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 1.0 12 2.0 13 4.0 14 11.0 15 22.0 16 53.0 17 172.0 18 361.0 19 706.0 20 1398.0 21 2422.0 22 4050.0 23 6215.0 24 9289.0 25 13338.0 26 17021.0 27 19036.0 28 20169.0 29 23069.0 30 28732.0 31 37838.0 32 52112.0 33 90704.0 34 94425.0 35 118720.0 36 158847.0 37 278479.0 38 121408.0 39 31245.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.92693720405364 23.308403770412 27.492056467672697 14.272602557861664 2 34.405009514537326 23.83059698190025 29.45629950878435 12.308093994778067 3 31.08855157764305 23.558613975306457 32.57184582024163 12.780988626808867 4 27.273885914059388 26.627605434349693 30.982962340133646 15.115546311457273 5 17.33575253352215 47.74775412665398 23.555250696995174 11.361242642828694 6 20.294463866884985 41.273443377439484 28.359693764659028 10.072398991016506 7 39.690666902686196 55.54259414966588 3.7549232198964466 1.0118157277514714 8 88.00858521042616 2.5956542903925297 7.665707837323539 1.7300526618577685 9 84.30906757534186 3.8111253706244193 9.000752312253839 2.8790547417798824 10 48.78213922202062 23.872637960791256 14.766650440323936 12.578572376864186 11 41.26937204053635 21.843519051201486 21.492587511616588 15.394521396645573 12 37.4649732265345 20.235340974465636 26.971190866044164 15.328494932955703 13 24.38828163030491 30.94233747842634 28.270301367438154 16.399079523830597 14 18.938620170819135 34.211178475018805 30.33066336239324 16.519537991768818 15 17.369650838606894 22.535911846705314 42.82099393724831 17.27344337743948 16 20.713280523963356 17.738549364959947 40.69398592733548 20.854184183741204 17 20.555117936009204 18.023188918883037 29.51551090852768 31.906182236580076 18 23.52799044120901 21.94317829800416 33.76103022525114 20.76780103553569 19 28.78346683188034 24.090631499756604 25.998229853520378 21.127671814842678 20 29.41284241270965 24.01584281099261 25.29919900871797 21.272115767579766 21 25.388768420586803 25.34026640704518 29.69774748860468 19.573217683763332 22 24.104969686241535 21.509049873877064 28.088949860600966 26.297030579280435 23 21.6490684604151 27.765544098774175 26.38713103509315 24.198256405717572 24 22.401380714254103 24.897818294463868 33.444882063990796 19.255918927291233 25 22.66654865690136 22.85798999867239 32.05159976988096 22.423861574545292 26 19.890870469531354 28.672744169580035 27.131477629773865 24.30490773111475 27 20.379607912554764 27.301942735761386 30.337743948311726 21.980705403372127 28 18.758950303137585 25.943886356596007 34.92437049165819 20.372792848608224 29 20.438111253706246 24.92667168208169 33.17697039430013 21.458246669911933 30 22.41598442271098 25.887772713192014 31.328583440279683 20.367659423817322 31 29.31486480506262 23.720139841571893 26.375536575651637 20.58945877771386 32 29.360180554940925 24.711510377483737 26.10461565694561 19.82369341062973 33 28.154445280346952 24.071425410452715 26.161437358941452 21.612691950258885 34 21.100677081028454 25.671283798734347 29.021108996769485 24.206930123467718 35 21.916803115457803 24.31004115590565 29.87219542417135 23.900960304465194 36 30.31048369252556 23.510997035004646 25.399035270168607 20.779484002301192 37 22.48634774527592 29.115723326105236 26.66336239323804 21.734566535380804 38 22.856662388812673 29.653316811966192 24.338540514227553 23.151480284993582 39 22.04584679382219 27.23202194981635 25.217683763331415 25.504447493030046 40 24.720538124529806 23.157410275700315 26.910386334469177 25.211665265300702 41 20.229942027702794 22.294906403504893 27.982741071823693 29.492410496968624 42 22.4528034694871 25.196707527547908 25.62065760941718 26.729831393547816 43 21.99168031154578 24.41837412045847 27.259193698278533 26.33075186971722 44 21.852546798247555 25.784042129486217 29.08695844581139 23.276452626454837 45 20.85710492543258 29.18192680444307 25.37611187325751 24.58485639686684 46 23.720139841571893 26.982077266893832 27.871133336283577 21.426649555250695 47 22.60238084701509 26.634243483648273 27.447094747090322 23.316280922246317 48 22.445103332300747 25.80448732132584 28.72354737354516 23.026861972828254 49 22.4794441740054 24.00070805859185 30.504668761340003 23.015179006062752 50 21.340620436341105 27.415674647077044 28.15957870513785 23.084126211443998 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 398.0 1 1028.5 2 1659.0 3 7388.0 4 13117.0 5 9397.0 6 5677.0 7 5745.0 8 5813.0 9 5885.0 10 5957.0 11 5894.5 12 5832.0 13 5544.5 14 5257.0 15 5015.0 16 4773.0 17 4564.5 18 4356.0 19 4240.5 20 4125.0 21 4471.0 22 4817.0 23 5203.5 24 5590.0 25 6276.5 26 6963.0 27 8002.0 28 9041.0 29 10536.0 30 12031.0 31 14307.0 32 16583.0 33 19008.5 34 21434.0 35 23842.5 36 26251.0 37 30373.0 38 34495.0 39 45175.0 40 55855.0 41 67391.5 42 78928.0 43 83521.0 44 88114.0 45 89665.5 46 91217.0 47 94305.0 48 97393.0 49 94410.0 50 91427.0 51 82690.0 52 73953.0 53 68532.0 54 63111.0 55 62649.0 56 62187.0 57 60411.5 58 58636.0 59 53720.5 60 48805.0 61 43937.5 62 39070.0 63 33912.5 64 28755.0 65 24329.5 66 19904.0 67 17001.5 68 14099.0 69 12000.0 70 9901.0 71 8450.5 72 7000.0 73 5439.5 74 3879.0 75 2831.0 76 1783.0 77 1316.5 78 850.0 79 644.0 80 438.0 81 337.5 82 237.0 83 156.5 84 76.0 85 53.5 86 31.0 87 22.5 88 14.0 89 11.0 90 8.0 91 7.5 92 7.0 93 4.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1129850.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.323471004734184 #Duplication Level Percentage of deduplicated Percentage of total 1 70.11065023019319 19.85776968917937 2 7.863685491263123 4.4545373600428 3 3.8345265672113813 3.258213061298834 4 2.6042455062356478 2.950450883402987 5 1.9205803535130885 2.7198750977495045 6 1.5312437326039021 2.6022082476952546 7 1.2462041954086813 2.470777987624512 8 1.1113671630884026 2.5182220495478447 9 0.9527136259223816 2.428574108366498 >10 8.470709181234941 47.44903804309741 >50 0.3045385672393219 5.446766542711844 >100 0.04430277487972071 2.2894818355684463 >500 0.0038372482179097884 0.660404651687239 >1k 0.0013953629883308321 0.8936804420273904 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4274 0.378280302695048 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1751 0.15497632429083505 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1713 0.1516130459795548 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1307 0.11567907244324467 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.013630127893083153 0.0 2 0.0 0.0 0.0 0.0436341107226623 0.0 3 0.0 0.0 0.0 0.06080453157498783 0.0 4 0.0 0.0 0.0 0.08284285524627163 0.0 5 0.0 0.0 0.0 0.13904500597424438 0.0 6 0.0 0.0 0.0 0.2520688586980573 0.0 7 0.0 0.0 0.0 0.3279196353498252 0.0 8 0.0 0.0 0.0 0.7106253042439262 0.0 9 0.0 0.0 0.0 0.8784351905120149 0.0 10 0.0 0.0 0.0 1.1926361906447758 0.0 11 0.0 0.0 0.0 1.4779838031597115 0.0 12 0.0 0.0 0.0 1.7501438244014693 0.0 13 0.0 0.0 0.0 1.858476788954286 0.0 14 0.0 0.0 0.0 1.9044120901004558 0.0 15 0.0 0.0 0.0 1.9646855777315573 0.0 16 0.0 0.0 0.0 2.0857635969376465 0.0 17 0.0 0.0 0.0 2.2327742620701865 0.0 18 0.0 0.0 0.0 2.457051821038191 0.0 19 0.0 0.0 0.0 2.5519316723458867 0.0 20 0.0 0.0 0.0 2.6560162853476124 0.0 21 0.0 0.0 0.0 2.787538168783467 0.0 22 0.0 0.0 0.0 2.92649466743373 0.0 23 0.0 0.0 0.0 3.0922688852502547 0.0 24 0.0 0.0 0.0 3.2143204850201355 0.0 25 0.0 0.0 0.0 3.3128291366110547 0.0 26 0.0 0.0 0.0 3.414435544541311 0.0 27 0.0 0.0 0.0 3.5386998274107184 0.0 28 0.0 0.0 0.0 3.650307562950834 0.0 29 0.0 0.0 0.0 3.7806788511749345 0.0 30 0.0 0.0 0.0 3.9484887374430233 0.0 31 0.0 0.0 0.0 4.090277470460681 0.0 32 0.0 0.0 0.0 4.216488914457671 0.0 33 0.0 0.0 0.0 4.352170642120636 0.0 34 0.0 0.0 0.0 4.504314732044077 0.0 35 0.0 0.0 0.0 4.696464132406956 0.0 36 0.0 0.0 0.0 4.841439129087932 0.0 37 0.0 0.0 0.0 4.998539629154313 0.0 38 0.0 0.0 0.0 5.204407664734257 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGACC 30 2.5276786E-6 44.000004 27 TAGTACG 30 2.5276786E-6 44.000004 1 TATTTCG 25 4.442793E-5 44.0 40 GTCGAAA 20 7.8564254E-4 44.0 1 TATGCGA 25 4.442793E-5 44.0 1 TGATTCG 50 2.7284841E-11 44.0 15 TACGACG 20 7.8564254E-4 44.0 1 GTGTCGA 20 7.8564254E-4 44.0 1 GCGATAC 90 0.0 44.0 9 AATCGGC 20 7.8564254E-4 44.0 39 CGTTTTA 2465 0.0 43.018253 1 AGGCGAT 970 0.0 42.41237 7 CGTTATT 1170 0.0 42.30769 1 CACGACG 310 0.0 41.161293 26 CGCATCG 65 0.0 40.615383 21 TCACGAC 315 0.0 40.507935 25 CGGTCTA 305 0.0 40.393444 31 CATATGC 615 0.0 40.065037 33 CGATACG 55 7.8216544E-11 40.0 10 CGACGGT 320 0.0 39.875 28 >>END_MODULE