SRR1545787_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545787_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	434253
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1094	0.25192687212293297	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	999	0.2300502241780713	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	509	0.11721277688352182	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTAATA	20	7.028432E-4	45.000004	1
GCGAATA	20	7.028432E-4	45.000004	1
GTTACGG	20	7.028432E-4	45.000004	2
CCGTAAG	20	7.028432E-4	45.000004	2
AACGCGT	20	7.028432E-4	45.000004	14
CGATGTA	20	7.028432E-4	45.000004	10
CGGTCTA	80	0.0	45.000004	31
TCGACAA	40	6.7975634E-9	45.000004	19
CACCACT	20	7.028432E-4	45.000004	39
TTCTCGT	20	7.028432E-4	45.000004	31
CAACCCG	25	3.8867838E-5	45.0	23
AGGATCG	50	2.1827873E-11	45.0	7
TACCGGG	50	2.1827873E-11	45.0	3
CGAAGGA	85	0.0	45.0	4
ACGGTCT	85	0.0	45.0	30
AGGCGAT	345	0.0	44.347824	7
ATAGGCG	125	0.0	43.199997	5
TCACGAC	100	0.0	42.75	25
CGTTTTA	575	0.0	42.652176	1
CGACGGT	90	0.0	42.5	28