SRR1545781_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545781_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	401344
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1113	0.2773182108116728	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1022	0.2546443948333599	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	548	0.1365412214957742	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	130	0.0	45.000004	25
CACGACG	130	0.0	45.000004	26
GTACCGC	20	7.0277933E-4	45.0	31
GACGTCA	20	7.0277933E-4	45.0	9
CGCATCG	20	7.0277933E-4	45.0	21
ATAGCGG	20	7.0277933E-4	45.0	2
GGATCGT	20	7.0277933E-4	45.0	8
GCGTTAA	20	7.0277933E-4	45.0	1
ATGCGCG	40	6.7957444E-9	45.0	36
ATACGAA	20	7.0277933E-4	45.0	19
TGCGTAG	20	7.0277933E-4	45.0	2
GTTAATC	30	2.161958E-6	44.999996	40
CGAGACA	60	0.0	44.999996	22
CGAAGGA	140	0.0	43.39286	4
CGACGGT	135	0.0	43.333336	28
GACGGTC	135	0.0	43.333336	29
ACGGTCT	135	0.0	43.333336	30
ATAGGCG	120	0.0	43.124996	5
CGTTTTA	660	0.0	42.272728	1
CGTTATT	145	0.0	41.89655	1