SRR1545779_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545779_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	209704
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	759	0.3619387326898867	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	654	0.31186815702132525	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	563	0.2684736581085721	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGGC	75	0.0	45.000004	4
AGGTCAA	35	1.2055898E-7	45.0	7
GTTGATC	55	1.8189894E-12	45.0	16
TTTAGCG	20	7.020086E-4	45.0	1
GTGCAAA	25	3.8798673E-5	45.0	1
ATGGGCT	45	3.8198777E-10	45.0	5
TTAGGCG	35	1.2055898E-7	45.0	5
TTAGGCC	40	6.7684596E-9	45.0	5
AACCGGA	20	7.020086E-4	45.0	24
GGTACTA	35	1.2055898E-7	45.0	38
TCGTTCA	20	7.020086E-4	45.0	16
CTCACGT	40	6.7684596E-9	45.0	45
GAAGCGC	20	7.020086E-4	45.0	9
ACACGCG	20	7.020086E-4	45.0	36
ACCGGAA	20	7.020086E-4	45.0	25
GAGCTTC	20	7.020086E-4	45.0	10
CCGATGT	35	1.2055898E-7	45.0	11
ACACCCA	20	7.020086E-4	45.0	30
TATGGGC	50	2.1827873E-11	45.0	4
AGGACTA	85	0.0	45.0	7