##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545778_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 907576 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.58643463467522 31.0 31.0 33.0 30.0 34.0 2 31.771820762117994 31.0 31.0 34.0 30.0 34.0 3 31.79840916903929 31.0 31.0 34.0 30.0 34.0 4 35.696752668647036 37.0 35.0 37.0 35.0 37.0 5 27.231836231896832 35.0 26.0 37.0 0.0 37.0 6 31.430847664548203 36.0 28.0 37.0 17.0 37.0 7 14.882417560623022 0.0 0.0 32.0 0.0 37.0 8 25.05361424277416 17.0 17.0 35.0 17.0 37.0 9 33.269882632418664 32.0 32.0 37.0 28.0 39.0 10 36.15347364848784 37.0 35.0 39.0 32.0 39.0 11 37.120772254885544 39.0 37.0 39.0 34.0 39.0 12 36.99686307262422 39.0 35.0 39.0 33.0 39.0 13 36.46652071011133 39.0 35.0 39.0 33.0 39.0 14 37.79318426225462 40.0 36.0 41.0 33.0 41.0 15 38.10157386268478 40.0 36.0 41.0 33.0 41.0 16 38.16180573307359 40.0 36.0 41.0 34.0 41.0 17 38.193134238895695 40.0 36.0 41.0 34.0 41.0 18 38.17374082170529 40.0 36.0 41.0 34.0 41.0 19 38.09714007421968 40.0 36.0 41.0 34.0 41.0 20 38.103287217819776 40.0 36.0 41.0 34.0 41.0 21 37.94673063192504 40.0 35.0 41.0 34.0 41.0 22 37.84386762100364 40.0 35.0 41.0 34.0 41.0 23 37.744981136565976 39.0 35.0 41.0 34.0 41.0 24 37.61349022010278 39.0 35.0 41.0 33.0 41.0 25 37.42797627967244 39.0 35.0 41.0 33.0 41.0 26 37.1740339101078 39.0 35.0 40.0 33.0 41.0 27 36.95798037850274 39.0 35.0 40.0 33.0 41.0 28 36.99952510864104 39.0 35.0 40.0 33.0 41.0 29 36.95568525390711 38.0 35.0 40.0 33.0 41.0 30 36.74790320590232 38.0 35.0 40.0 32.0 41.0 31 36.5235164878754 38.0 35.0 40.0 31.0 41.0 32 36.260034421359755 38.0 35.0 40.0 31.0 41.0 33 36.051070103220006 38.0 35.0 40.0 30.0 41.0 34 35.82094722645817 38.0 35.0 40.0 30.0 41.0 35 35.623715259107776 38.0 35.0 40.0 29.0 41.0 36 35.39835451796874 38.0 35.0 40.0 28.0 41.0 37 35.2142564369265 38.0 34.0 40.0 27.0 41.0 38 35.042280756652886 38.0 34.0 40.0 27.0 41.0 39 34.959603383077564 38.0 34.0 40.0 26.0 41.0 40 34.69335791162393 37.0 34.0 40.0 25.0 41.0 41 34.52081037841459 37.0 34.0 40.0 24.0 40.0 42 34.45984468518339 37.0 34.0 40.0 24.0 41.0 43 34.29792546299153 37.0 33.0 40.0 23.0 41.0 44 34.01960056237714 36.0 33.0 40.0 23.0 40.0 45 33.75142467407688 36.0 33.0 39.0 23.0 40.0 46 33.664003896092446 36.0 33.0 39.0 23.0 40.0 47 33.53407868872689 36.0 33.0 39.0 22.0 40.0 48 33.45149717489224 36.0 33.0 39.0 22.0 40.0 49 33.348677135578725 36.0 33.0 39.0 21.0 40.0 50 33.36565202253034 36.0 33.0 39.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 5.0 14 2.0 15 16.0 16 44.0 17 113.0 18 275.0 19 618.0 20 1185.0 21 2102.0 22 3322.0 23 5334.0 24 8387.0 25 12242.0 26 15341.0 27 16763.0 28 17218.0 29 19103.0 30 23137.0 31 30857.0 32 42613.0 33 79956.0 34 78979.0 35 94576.0 36 116617.0 37 217613.0 38 98665.0 39 22491.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.51628513755322 23.229900305869702 27.757124472220507 16.496690084356572 2 33.35037506500833 24.986447415973977 29.839153966169224 11.824023552848468 3 29.593224148721433 23.829299144093717 33.81413787936217 12.763338827822684 4 26.51447371900535 25.888740997999065 33.06918649237089 14.527598790624696 5 17.02369829083184 48.00666831207524 24.235105379604573 10.734528017488342 6 20.751209816037445 39.99532821493737 29.125935458848623 10.127526510176558 7 38.61065078847391 56.22768781898155 4.242840269024302 0.9188211235202342 8 87.46661436617981 2.7315618747080133 8.290435181185927 1.5113885779262564 9 83.58760037726867 4.177170837483582 9.771413082761113 2.463815702486624 10 52.92967200542985 21.194478478937302 14.68262712984918 11.19322238578367 11 47.81748305376078 19.130408913413312 20.11148377656527 12.940624256260632 12 41.91197211032465 20.842441845090658 24.053743157597822 13.191842886986874 13 21.172772307773673 39.75777235184712 24.97653089107689 14.092924449302318 14 15.969461510661368 41.282162595749554 28.676386330180613 14.071989563408463 15 14.969324882985005 21.514672049503293 48.78037762126808 14.735625446243619 16 16.124379666275882 16.340890459862315 47.995319400248576 19.539410473613227 17 16.3426533976218 16.540102426683827 30.407481026382367 36.70976314931201 18 21.708485019436388 22.085423149135718 35.708634869145946 20.497456962281944 19 29.07899724100241 23.257997126411453 26.68382592752563 20.979179705060513 20 31.0163556550636 22.21984715329625 25.860093259407474 20.903703932232673 21 22.764154186536445 26.972947720080743 29.30432272338625 20.958575369996563 22 22.89990039401659 22.769112448984988 26.44241363808651 27.88857351891191 23 19.96086278173949 28.67153825134204 26.425886096591363 24.941712870327112 24 20.465613899001294 22.703222650224333 39.42325491198533 17.407908538789037 25 18.702786323128862 22.95697550397983 36.956243884809645 21.38399428808166 26 17.015985438134106 32.34550054210336 28.06464692764022 22.573867092122313 27 17.91188837078107 31.590852997434926 30.8150501996527 19.682208432131304 28 16.024773682865128 26.87554540886934 40.11432651370244 16.9853543945631 29 16.71242959267323 23.788090473965816 38.69593290258887 20.80354703077208 30 19.829854469487955 27.438583655804035 33.51741341771929 19.214148456988724 31 30.31668973176902 24.449412500991652 25.74825689529031 19.485640871949016 32 30.108663076150094 24.69985984644812 28.135274621629485 17.056202455772297 33 28.608292859220608 25.270831313300484 26.12717832996906 19.99369749750985 34 19.780161661392544 26.729772492882137 29.40271668708736 24.087349158637956 35 20.569186492370886 23.69751954657241 32.65963401412113 23.073659946935575 36 30.655283965199608 23.90984336298007 26.1464604617134 19.288412210106923 37 21.367136195756608 31.0984424444895 28.469902245101235 19.064519114652654 38 22.321877176126296 31.52639558560385 23.355289254012888 22.796437984256965 39 21.73790404329775 29.4478919671741 26.66751875325042 22.146685236277733 40 23.349780073514502 25.098944881750953 25.9860331256005 25.565241919134046 41 17.991771488007615 23.234528017488344 27.768473384047176 31.005227110456868 42 22.2925683358749 25.18059093673698 24.405339057004593 28.121501670383527 43 22.61331282449073 25.39666099588354 25.671018184702987 26.31900799492274 44 20.028956252699498 28.946776909041226 28.461969025183564 22.56229781307571 45 18.883377259865842 34.793559988364606 23.937609632691917 22.38545311907763 46 22.747185910601424 30.16606873694324 27.0657223196735 20.02102303278183 47 23.23750297495747 26.73109469620175 26.920830872566043 23.110571456274737 48 22.749169215580846 24.191031935617513 30.248926811638917 22.810872037162728 49 21.86659849973997 23.65851454864386 31.387674420654577 23.087212530961594 50 20.09727009087944 30.51050270170212 27.564192971167152 21.82803423625129 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 583.0 1 937.0 2 1291.0 3 6511.5 4 11732.0 5 8711.5 6 5691.0 7 5787.0 8 5883.0 9 6159.5 10 6436.0 11 6568.0 12 6700.0 13 6330.5 14 5961.0 15 5549.0 16 5137.0 17 4761.0 18 4385.0 19 4064.0 20 3743.0 21 3791.5 22 3840.0 23 4244.0 24 4648.0 25 5021.0 26 5394.0 27 6730.0 28 8066.0 29 9494.0 30 10922.0 31 11896.0 32 12870.0 33 15579.0 34 18288.0 35 19287.5 36 20287.0 37 24013.0 38 27739.0 39 38243.5 40 48748.0 41 64394.5 42 80041.0 43 85138.0 44 90235.0 45 86418.5 46 82602.0 47 81044.0 48 79486.0 49 76066.0 50 72646.0 51 65508.5 52 58371.0 53 52398.5 54 46426.0 55 42937.0 56 39448.0 57 37698.5 58 35949.0 59 32901.5 60 29854.0 61 25967.5 62 22081.0 63 19415.0 64 16749.0 65 14218.5 66 11688.0 67 9967.0 68 8246.0 69 7330.5 70 6415.0 71 5364.0 72 4313.0 73 3271.5 74 2230.0 75 1745.0 76 1260.0 77 933.0 78 606.0 79 480.0 80 354.0 81 255.5 82 157.0 83 100.0 84 43.0 85 29.5 86 16.0 87 12.0 88 8.0 89 6.5 90 5.0 91 3.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 907576.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.12549055688629 #Duplication Level Percentage of deduplicated Percentage of total 1 74.47113949022987 17.96652772532103 2 5.883877977969277 2.83902885190738 3 2.6944497350434946 1.9501476491638983 4 1.7286459989252785 1.6681773089308432 5 1.3892090139037736 1.6757674473238404 6 1.1146607382704372 1.6135042269165203 7 0.9884707790336839 1.6693139711734626 8 0.8285182579489012 1.599072752668328 9 0.7971985966589616 1.7309526494092908 >10 9.00923599948012 47.60070848258869 >50 1.0100632929847637 15.725197613403088 >100 0.0826198343638073 2.964403222225223 >500 0.0 0.0 >1k 0.0019102851876024811 0.9971980989684522 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3625 0.3994155861327316 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2030 0.22367272823432968 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1556 0.17144569710966354 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1444 0.15910513279328672 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.007602669087767857 0.0 2 0.0 0.0 0.0 0.03669114211922748 0.0 3 0.0 0.0 0.0 0.05046409336518374 0.0 4 0.0 0.0 0.0 0.07635724170758151 0.0 5 0.0 0.0 0.0 0.12131215457438276 0.0 6 0.0 0.0 0.0 0.21298491806746764 0.0 7 0.0 0.0 0.0 0.2643304803123926 0.0 8 0.0 0.0 0.0 0.574056607931457 0.0 9 0.0 0.0 0.0 0.7171851172794345 0.0 10 0.0 0.0 0.0 0.9581566722786852 0.0 11 0.0 0.0 0.0 1.1764304036246 0.0 12 0.0 0.0 0.0 1.3714553932673408 0.0 13 0.0 0.0 0.0 1.451007959663984 0.0 14 0.0 0.0 0.0 1.4770112916163496 0.0 15 0.0 0.0 0.0 1.5200930831137007 0.0 16 0.0 0.0 0.0 1.6239962273131947 0.0 17 0.0 0.0 0.0 1.7392482833393568 0.0 18 0.0 0.0 0.0 1.9332816204923886 0.0 19 0.0 0.0 0.0 2.00401949809162 0.0 20 0.0 0.0 0.0 2.0909543663560957 0.0 21 0.0 0.0 0.0 2.188246493957531 0.0 22 0.0 0.0 0.0 2.293912575916507 0.0 23 0.0 0.0 0.0 2.4135719763413754 0.0 24 0.0 0.0 0.0 2.5046938217846217 0.0 25 0.0 0.0 0.0 2.5700327024954386 0.0 26 0.0 0.0 0.0 2.6424233342441843 0.0 27 0.0 0.0 0.0 2.7075418477350657 0.0 28 0.0 0.0 0.0 2.7831278041728735 0.0 29 0.0 0.0 0.0 2.861468350859873 0.0 30 0.0 0.0 0.0 2.960303049000855 0.0 31 0.0 0.0 0.0 3.0564933405026133 0.0 32 0.0 0.0 0.0 3.1406736185178983 0.0 33 0.0 0.0 0.0 3.229591791761792 0.0 34 0.0 0.0 0.0 3.3197219847153296 0.0 35 0.0 0.0 0.0 3.4391610179202625 0.0 36 0.0 0.0 0.0 3.535351309422021 0.0 37 0.0 0.0 0.0 3.6308804992639736 0.0 38 0.0 0.0 0.0 3.7279522596454733 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTCGGC 65 0.0 44.000004 17 GCATAAC 20 7.8556064E-4 44.0 24 TTAGGCG 160 0.0 44.0 5 CGTATTA 20 7.8556064E-4 44.0 24 CGTTGTC 25 4.442098E-5 44.0 40 TCTTACG 25 4.442098E-5 44.0 1 GCAGTCG 20 7.8556064E-4 44.0 35 GTTACGA 20 7.8556064E-4 44.0 1 CTAACGA 20 7.8556064E-4 44.0 11 CCCGTAT 20 7.8556064E-4 44.0 22 CCCCGTA 20 7.8556064E-4 44.0 21 TAACCGT 20 7.8556064E-4 44.0 29 TACGCAC 30 2.5271256E-6 44.0 36 CGTAGGT 25 4.442098E-5 44.0 4 GCTTAAC 30 2.5271256E-6 44.0 40 TCTCGAG 20 7.8556064E-4 44.0 19 GGTATCG 25 4.442098E-5 44.0 24 CGGGATA 25 4.442098E-5 44.0 6 ACTAACG 20 7.8556064E-4 44.0 10 AGTTACG 30 2.5271256E-6 44.0 1 >>END_MODULE