##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545776_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1074983 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.477264291621356 31.0 31.0 33.0 30.0 34.0 2 31.662383498157645 31.0 31.0 34.0 30.0 34.0 3 31.731222726312883 31.0 31.0 34.0 30.0 34.0 4 35.6405385015391 37.0 35.0 37.0 33.0 37.0 5 27.07938265070238 35.0 25.0 37.0 0.0 37.0 6 31.311203060885614 35.0 26.0 37.0 17.0 37.0 7 15.002678181887527 0.0 0.0 32.0 0.0 37.0 8 25.080548250530473 17.0 17.0 35.0 17.0 37.0 9 33.106331914086084 32.0 32.0 37.0 28.0 39.0 10 35.946907067367576 37.0 35.0 39.0 32.0 39.0 11 36.95433788255256 38.0 37.0 39.0 34.0 39.0 12 36.96654923845308 39.0 35.0 39.0 33.0 39.0 13 36.50017535161021 39.0 35.0 39.0 32.0 39.0 14 37.82205765114425 40.0 36.0 41.0 33.0 41.0 15 38.062930297502376 40.0 36.0 41.0 33.0 41.0 16 38.12618897229073 40.0 36.0 41.0 33.0 41.0 17 38.127748066713615 40.0 36.0 41.0 34.0 41.0 18 38.12658060639099 40.0 36.0 41.0 34.0 41.0 19 38.087607897055115 40.0 36.0 41.0 34.0 41.0 20 38.11467995307833 40.0 36.0 41.0 34.0 41.0 21 37.97312422615055 40.0 36.0 41.0 34.0 41.0 22 37.90153239632627 40.0 36.0 41.0 33.0 41.0 23 37.81473939587882 40.0 35.0 41.0 33.0 41.0 24 37.67247854152112 40.0 35.0 41.0 33.0 41.0 25 37.51250484891389 39.0 35.0 41.0 33.0 41.0 26 37.25585706936761 39.0 35.0 40.0 33.0 41.0 27 37.07040390406174 39.0 35.0 40.0 32.0 41.0 28 37.0815715225264 39.0 35.0 40.0 32.0 41.0 29 37.01058063243791 39.0 35.0 40.0 32.0 41.0 30 36.814904049645435 38.0 35.0 40.0 32.0 41.0 31 36.66094161489065 38.0 35.0 40.0 31.0 41.0 32 36.45670303623406 38.0 35.0 40.0 31.0 41.0 33 36.25721616062766 38.0 35.0 40.0 30.0 41.0 34 36.03957271882439 38.0 35.0 40.0 30.0 41.0 35 35.90220310460724 38.0 35.0 40.0 30.0 41.0 36 35.740575432355676 38.0 35.0 40.0 29.0 41.0 37 35.647062325636774 38.0 35.0 40.0 29.0 41.0 38 35.447111256643126 38.0 34.0 40.0 29.0 41.0 39 35.387369846778974 38.0 34.0 40.0 28.0 41.0 40 35.146295336763465 38.0 34.0 40.0 27.0 41.0 41 34.95849050636149 37.0 34.0 40.0 27.0 40.0 42 34.95866353235353 38.0 34.0 40.0 27.0 41.0 43 34.81690966275746 37.0 34.0 40.0 26.0 41.0 44 34.603438379955776 37.0 34.0 40.0 26.0 40.0 45 34.406345030572574 37.0 33.0 40.0 25.0 40.0 46 34.36434064538695 37.0 33.0 40.0 25.0 40.0 47 34.17763071602062 36.0 33.0 39.0 25.0 40.0 48 34.106126329439626 36.0 33.0 39.0 24.0 40.0 49 33.958354690260215 36.0 33.0 39.0 24.0 40.0 50 34.05057847426424 36.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 3.0 13 6.0 14 11.0 15 21.0 16 61.0 17 138.0 18 371.0 19 801.0 20 1406.0 21 2425.0 22 3663.0 23 5654.0 24 8525.0 25 12099.0 26 15281.0 27 17203.0 28 18720.0 29 21980.0 30 26496.0 31 35932.0 32 49255.0 33 87955.0 34 90253.0 35 113301.0 36 149277.0 37 266153.0 38 117871.0 39 30119.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.86790023656188 22.785662656990855 27.774020612418987 14.572416494028278 2 33.33931792409741 24.293221381175332 29.634422125745246 12.733038568982021 3 31.20291204605096 23.78744594100558 32.07250719313701 12.937134819806454 4 28.17914329808006 26.470279064878234 30.341782149113055 15.008795487928648 5 17.666604960264486 48.55025614358552 22.5736593043797 11.209479591770288 6 20.05668926857448 41.83256851503698 28.03979225717988 10.070949959208656 7 39.31624965232008 55.77464945957284 3.701360858729859 1.2077400293772087 8 86.77262803225726 3.413821427873743 7.603096979208043 2.210453560660959 9 82.20734653478242 5.149848881331147 9.30703090188403 3.3357736820024133 10 47.772569426679304 24.414990748690908 14.967027385549352 12.84541243908043 11 43.033703788804104 21.493270126132227 20.894749033240526 14.578277051823147 12 39.31997064139619 20.16413282814705 25.194258885954472 15.321637644502283 13 23.954890449430362 33.072243933159875 25.881525568311314 17.09134004909845 14 18.165496570643445 36.41220372787291 28.31579662190007 17.106503079583586 15 17.116642774815976 23.066039183875468 42.71100101117879 17.106317030129777 16 19.640124541504377 18.18707830728486 42.14410832543398 20.02868882577678 17 18.266428399332828 18.594061487483987 30.329130786254293 32.81037932692889 18 22.623055434365007 23.20157621097264 32.81930970071155 21.356058653950807 19 28.998877191546285 25.31714455019289 25.004209368892344 20.679768889368482 20 31.186539694116096 22.687428545381646 24.742716861568972 21.383314898933286 21 24.577877045497466 26.999775810408167 27.608901722166767 20.813445421927604 22 23.380555785533353 23.177575831431753 26.498651606583547 26.94321677645135 23 22.2692823979542 29.02883115360894 24.91825452123429 23.78363192720257 24 22.143419942454905 23.834888551725932 35.23627815509641 18.785413350722756 25 21.683877791555773 22.69868453733687 32.30069684822923 23.316740822878128 26 18.961509158749486 30.475830780579788 27.316338956057912 23.246321104612814 27 20.42720675582777 29.189856955877442 28.149375385471213 22.23356090282358 28 18.855740044261164 27.171685505724273 34.830504296347016 19.142070153667547 29 20.31362356427962 24.72299561946561 33.70881213935476 21.254568676900007 30 21.681645198110107 26.45651140529664 31.518824018612385 20.343019377980863 31 29.529118134891437 24.094334515057447 25.27398107691005 21.10256627314106 32 30.034056352519062 25.06597778755571 26.028039513183 18.871926346742228 33 28.277749508596877 24.802159662059772 25.438541818800854 21.48154901054249 34 21.23233576717027 26.56376891541541 28.62556896248592 23.578326354928404 35 21.812344939408344 24.297500518612853 30.229780377922253 23.660374164056545 36 28.647801872215656 25.749802555017148 25.158444366096955 20.443951206670246 37 22.322306492288714 30.484947203816247 26.700515263962316 20.492231039932722 38 22.304073645815794 31.20533068895043 23.32343860321512 23.167157062018656 39 22.541472748871378 28.581196167753355 25.73119760963662 23.146133473738654 40 24.220476044737453 24.82457862124331 26.72972502820975 24.225220305809486 41 19.808685346651995 24.10075322121373 27.735880474388896 28.354680957745376 42 22.86184990832413 26.207112112470615 23.732003203771594 27.199034775433656 43 22.569101092761468 25.737988414700514 24.81806689036013 26.874843602177894 44 21.97151024713879 27.401363556446938 27.70704280904907 22.920083387365196 45 20.74897928618406 31.440962322194864 24.397688149487013 23.412370242134063 46 22.68259125958271 29.545490486826303 26.53660569515983 21.235312558431158 47 22.90417615906484 26.682282417489393 26.334742037781062 24.078799385664702 48 22.758778510915985 24.730251548164016 29.309207680493554 23.201762260426445 49 22.201467372042163 24.12652107056577 30.150616335328095 23.521395222063976 50 20.41334607151927 28.86436343644504 27.537737806086238 23.184552685949452 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 565.0 1 1181.0 2 1797.0 3 6767.0 4 11737.0 5 8558.0 6 5379.0 7 5349.0 8 5319.0 9 5433.0 10 5547.0 11 5519.5 12 5492.0 13 5276.0 14 5060.0 15 4772.5 16 4485.0 17 4188.5 18 3892.0 19 3742.5 20 3593.0 21 3844.0 22 4095.0 23 4403.0 24 4711.0 25 5796.5 26 6882.0 27 8351.5 28 9821.0 29 11757.0 30 13693.0 31 15726.0 32 17759.0 33 19705.0 34 21651.0 35 22869.0 36 24087.0 37 28758.0 38 33429.0 39 45363.5 40 57298.0 41 68654.0 42 80010.0 43 83529.0 44 87048.0 45 88613.0 46 90178.0 47 88899.0 48 87620.0 49 84179.0 50 80738.0 51 74946.5 52 69155.0 53 65939.0 54 62723.0 55 60688.0 56 58653.0 57 57206.0 58 55759.0 59 52115.5 60 48472.0 61 42008.5 62 35545.0 63 30206.5 64 24868.0 65 20865.5 66 16863.0 67 14370.0 68 11877.0 69 10193.5 70 8510.0 71 6900.5 72 5291.0 73 3946.5 74 2602.0 75 1966.0 76 1330.0 77 1051.5 78 773.0 79 565.5 80 358.0 81 266.5 82 175.0 83 132.5 84 90.0 85 61.0 86 32.0 87 21.0 88 10.0 89 8.0 90 6.0 91 4.5 92 3.0 93 2.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1074983.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.15868717957488 #Duplication Level Percentage of deduplicated Percentage of total 1 69.0996389898768 17.384562015678657 2 7.3226383489805364 3.6845593510232 3 3.685607321861508 2.781751250323933 4 2.499664765917039 2.5155313559804817 5 1.8993403741879848 2.3892455160866106 6 1.6242583881299222 2.451852521145674 7 1.338601457797987 2.357421873440372 8 1.1405012503655405 2.2954811348688513 9 1.0086833778597546 2.2839434610129445 >10 9.839820429542566 50.686776104710816 >50 0.47964014804839517 7.538374777913718 >100 0.05840488003292352 2.5538201337440656 >500 0.0016001336995320936 0.24295258336386366 >1k 0.0016001336995320936 0.8337279207068129 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3415 0.31767944237257706 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1975 0.18372383563274955 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1476 0.1373044969083232 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1418 0.13190906274796904 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.009581546870973774 0.0 2 0.0 0.0 0.0 0.03851223693770041 0.0 3 0.0 0.0 0.0 0.05153569870407253 0.0 4 0.0 0.0 0.0 0.07767564696371942 0.0 5 0.0 0.0 0.0 0.1280020242180574 0.0 6 0.0 0.0 0.0 0.23618978160584866 0.0 7 0.0 0.0 0.0 0.31256308239293085 0.0 8 0.0 0.0 0.0 0.7938730193872834 0.0 9 0.0 0.0 0.0 1.011829954520211 0.0 10 0.0 0.0 0.0 1.3469980455504877 0.0 11 0.0 0.0 0.0 1.5755597995503186 0.0 12 0.0 0.0 0.0 1.8004935892009455 0.0 13 0.0 0.0 0.0 1.8857972637706828 0.0 14 0.0 0.0 0.0 1.9171465967368786 0.0 15 0.0 0.0 0.0 1.964403158003429 0.0 16 0.0 0.0 0.0 2.0652419619659104 0.0 17 0.0 0.0 0.0 2.1837554640398964 0.0 18 0.0 0.0 0.0 2.370456090933531 0.0 19 0.0 0.0 0.0 2.4481317378972505 0.0 20 0.0 0.0 0.0 2.5250631870457485 0.0 21 0.0 0.0 0.0 2.632227672437611 0.0 22 0.0 0.0 0.0 2.741810800728942 0.0 23 0.0 0.0 0.0 2.8736268387500083 0.0 24 0.0 0.0 0.0 2.9641398980262945 0.0 25 0.0 0.0 0.0 3.0391178279098368 0.0 26 0.0 0.0 0.0 3.1151190297893083 0.0 27 0.0 0.0 0.0 3.1958644927408155 0.0 28 0.0 0.0 0.0 3.286842675651615 0.0 29 0.0 0.0 0.0 3.3782859821969278 0.0 30 0.0 0.0 0.0 3.4975436820861354 0.0 31 0.0 0.0 0.0 3.606661686742953 0.0 32 0.0 0.0 0.0 3.7086167874282663 0.0 33 0.0 0.0 0.0 3.81373472882827 0.0 34 0.0 0.0 0.0 3.9250853269307515 0.0 35 0.0 0.0 0.0 4.05243617806049 0.0 36 0.0 0.0 0.0 4.168903136142618 0.0 37 0.0 0.0 0.0 4.281463055694834 0.0 38 0.0 0.0 0.0 4.409372055185989 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAACCGA 25 4.442647E-5 44.0 40 TCGATAT 25 4.442647E-5 44.0 16 TCATACG 25 4.442647E-5 44.0 34 CTCGATA 45 4.802132E-10 43.999996 24 ACGGTCT 230 0.0 43.04348 30 CGTTTTA 2130 0.0 42.760563 1 CGTTATT 1115 0.0 42.61883 1 CACGACG 235 0.0 42.12766 26 CGGTCTA 235 0.0 42.12766 31 TTACGGG 350 0.0 41.485718 3 AGGCGAT 985 0.0 41.319794 7 GTTTTAT 2480 0.0 41.072582 2 ACGGGTA 60 3.6379788E-12 40.333332 5 AGCGTAA 50 1.3478711E-9 39.600002 1 CGCATGG 50 1.3478711E-9 39.600002 2 CGTTCGA 50 1.3478711E-9 39.600002 14 TCGATAC 50 1.3478711E-9 39.600002 25 CCAGTCG 50 1.3478711E-9 39.600002 28 ATAGGCC 145 0.0 39.448273 5 AAGGCGA 605 0.0 39.272728 6 >>END_MODULE