SRR1545768_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545768_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1385328
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5120	0.3695875633784923	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2199	0.15873497106822357	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2000	0.14437014194472356	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCAAC	20	7.857042E-4	44.000004	13
CGCCTAT	20	7.857042E-4	44.000004	30
CGTAAAT	40	8.314601E-9	44.000004	16
CGTTATT	1900	0.0	42.726315	1
CGTTTTA	3365	0.0	42.692425	1
AGGCGAT	1195	0.0	42.343098	7
AGTACGG	105	0.0	41.90476	2
TTACGGG	385	0.0	41.714287	3
TTGCGAG	90	0.0	41.555557	2
CACGACG	185	0.0	40.43243	26
GCGCAAA	60	3.6379788E-12	40.333332	1
CGGTCTA	180	0.0	40.333332	31
ACGCATT	50	1.3478711E-9	39.600002	29
CGAAGGA	500	0.0	39.6	4
CGACGGT	195	0.0	39.48718	28
ACGGTCT	185	0.0	39.24324	30
TACGGGA	390	0.0	38.923077	4
GCGAATA	40	4.1253588E-7	38.500004	1
GCTAACG	40	4.1253588E-7	38.500004	1
TAGGCGA	360	0.0	38.5	6