##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545764_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 739629 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.54387267129872 31.0 31.0 33.0 30.0 34.0 2 31.721803769186984 31.0 31.0 34.0 30.0 34.0 3 31.757276959124102 31.0 31.0 34.0 30.0 34.0 4 35.651119682976194 37.0 35.0 37.0 33.0 37.0 5 26.977902434869375 35.0 22.0 37.0 0.0 37.0 6 31.276644101299436 35.0 25.0 37.0 17.0 37.0 7 15.176149123411873 0.0 0.0 32.0 0.0 37.0 8 25.220730934022328 17.0 17.0 35.0 17.0 37.0 9 33.35309864810601 32.0 32.0 37.0 28.0 39.0 10 36.12978533832503 37.0 35.0 39.0 32.0 39.0 11 37.045944656037015 39.0 37.0 39.0 34.0 39.0 12 36.87008351484325 39.0 35.0 39.0 33.0 39.0 13 36.27181735708037 39.0 35.0 39.0 32.0 39.0 14 37.5908692060479 40.0 35.0 41.0 33.0 41.0 15 37.938051374405276 40.0 36.0 41.0 33.0 41.0 16 38.04238070708423 40.0 36.0 41.0 33.0 41.0 17 38.0708950027649 40.0 36.0 41.0 34.0 41.0 18 38.05516143904579 40.0 36.0 41.0 34.0 41.0 19 37.9779362355992 40.0 36.0 41.0 34.0 41.0 20 37.97410864095377 40.0 36.0 41.0 34.0 41.0 21 37.802463126783834 40.0 35.0 41.0 34.0 41.0 22 37.73901239675567 39.0 35.0 41.0 33.0 41.0 23 37.63211150455161 39.0 35.0 41.0 33.0 41.0 24 37.48210116152828 39.0 35.0 41.0 33.0 41.0 25 37.307613681994624 39.0 35.0 41.0 33.0 41.0 26 37.07503086006633 39.0 35.0 40.0 33.0 41.0 27 36.830081027109536 38.0 35.0 40.0 32.0 41.0 28 36.90387478046426 38.0 35.0 40.0 32.0 41.0 29 36.89756621224966 38.0 35.0 40.0 32.0 41.0 30 36.688835889344524 38.0 35.0 40.0 32.0 41.0 31 36.466268899678084 38.0 35.0 40.0 31.0 41.0 32 36.17084916897526 38.0 35.0 40.0 31.0 41.0 33 35.94638393032182 38.0 35.0 40.0 30.0 41.0 34 35.72797848651148 38.0 35.0 40.0 30.0 41.0 35 35.56987489673877 38.0 35.0 40.0 29.0 41.0 36 35.349118274161775 38.0 35.0 40.0 28.0 41.0 37 35.17715368110228 38.0 34.0 40.0 27.0 41.0 38 35.00465503651155 38.0 34.0 40.0 27.0 41.0 39 34.98996523932945 38.0 34.0 40.0 27.0 41.0 40 34.77755334093174 37.0 34.0 40.0 26.0 41.0 41 34.607108428685194 37.0 34.0 40.0 25.0 40.0 42 34.63363659348133 37.0 34.0 40.0 25.0 41.0 43 34.52053123931052 37.0 34.0 40.0 24.0 41.0 44 34.307533912272234 37.0 34.0 40.0 24.0 40.0 45 34.07573661930508 36.0 33.0 40.0 23.0 40.0 46 34.05042392875347 36.0 33.0 39.0 23.0 40.0 47 33.90507267832927 36.0 33.0 39.0 23.0 40.0 48 33.9038274594425 36.0 33.0 39.0 23.0 40.0 49 33.813882365348036 36.0 33.0 39.0 24.0 40.0 50 33.84167062135206 36.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 7.0 15 12.0 16 32.0 17 113.0 18 259.0 19 565.0 20 1087.0 21 1821.0 22 2890.0 23 4541.0 24 6997.0 25 10014.0 26 12399.0 27 13227.0 28 13602.0 29 14923.0 30 18263.0 31 24487.0 32 35104.0 33 66759.0 34 64824.0 35 76413.0 36 92571.0 37 177695.0 38 82124.0 39 18899.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.18059324336931 23.00017981988267 28.945457790324607 15.873769146423408 2 32.25833492196764 23.436885249226304 31.59665183490642 12.708127993899646 3 28.25227242306616 23.325748449560525 35.930446210194575 12.491532917178748 4 25.006320736477345 26.824123986485116 33.6972995920928 14.472255684944749 5 16.930379960764114 48.01258468772858 24.6253189098859 10.431716441621408 6 19.630517462133042 40.23963365416986 29.27656973969382 10.853279144003277 7 39.691926628079756 55.21335696680363 4.204945993193885 0.8897704119227343 8 88.04008496151448 2.4834072217287315 8.046466539305516 1.4300412774512627 9 84.74681225317016 3.7441744442145994 9.3841642228739 2.1248490797413297 10 53.96083712239515 22.74356467904855 14.445350304003766 8.850247894552538 11 48.73159381257361 18.583100446304837 21.36246685838441 11.322838882737155 12 44.53246154490968 20.20472426040623 24.000411016874676 11.262403177809416 13 20.157673644489332 43.31631128579328 24.040971892665105 12.485043177052278 14 13.716200960211133 44.65049369345983 27.836793852052853 13.796511494276183 15 11.547140525858236 22.690294728843785 52.35422083233621 13.408343912961767 16 14.025815645411416 15.786292857635381 50.94527121029597 19.242620286657232 17 14.662080583643963 16.10307329755864 30.42336090120858 38.81148521758882 18 19.812635794432072 21.036763025787252 38.25864048056526 20.891960699215417 19 28.677891213027074 23.147551001921233 27.042476701156932 21.132081083894764 20 32.27117919930127 21.01756421124645 26.06523000044617 20.646026589006112 21 20.970243189490947 28.334611000920734 29.540350635250917 21.154795174337405 22 22.327410093438736 23.32453162328681 26.31900587997496 28.02905240329949 23 17.779048685219212 30.982965784197212 25.860262374785197 25.377723155798382 24 18.816866293777014 22.011440871031287 43.081734220805295 16.0899586143864 25 16.15877690031083 23.704992638201045 39.09149046346209 21.04473999802604 26 15.745731981844951 34.87478181628898 28.278231383572034 21.101254818294038 27 15.959217391421914 34.89884793592463 30.061693092077245 19.080241580576207 28 13.399690926126476 27.151315051194587 42.45723193655198 16.991762086126965 29 13.954698909858863 22.22587270104336 41.28745627875597 22.531972110341805 30 16.731496466471704 30.9724199564917 33.73745485912532 18.558628717911276 31 29.26913357913224 26.164333740294122 25.20331138989953 19.363221290674108 32 29.491271975544496 25.105424476325293 27.07154532880674 18.331758219323472 33 27.421720889797452 27.838145881245868 25.630011803214853 19.110121425741823 34 18.537537062500252 27.06410916824516 28.711962348691035 25.686391420563552 35 18.84945019732866 24.80338115460589 33.32779001364197 23.019378634423475 36 30.611292959037574 23.55343016566414 26.820608710583276 19.01466816471501 37 19.26979607343682 32.57998266698575 29.627015706523135 18.5232055530543 38 19.278719466110715 32.21506998779118 26.10930615213844 22.396904393959673 39 18.981002637808956 32.03214043797634 27.536643371203674 21.450213553011036 40 24.21173317974282 25.780898261155254 25.649751429432865 24.357617129669062 41 16.61224749164784 24.008793597871364 28.287830790842435 31.091128119638363 42 21.4089766626241 25.615274685011 24.252023649694642 28.723725002670257 43 22.09621310143329 26.824664798162324 25.36947577772099 25.709646322683398 44 19.362680478996904 29.88660531158189 28.883129244526646 21.86758496489456 45 16.57750034138737 38.85191089045995 22.47410526088079 22.096483507271888 46 21.838381134325452 32.93489033015201 26.25289165243656 18.97383688308598 47 20.949962751595734 28.252678031824065 26.698520474454085 24.09883874212612 48 22.360129199909686 23.542208323362118 31.180091640538706 22.917570836189494 49 20.538134659403564 22.909864269789313 33.4808397182912 23.071161352515922 50 19.300892744876148 32.1984400287171 27.139822803053963 21.36084442335279 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 413.0 1 623.5 2 834.0 3 4526.5 4 8219.0 5 6245.5 6 4272.0 7 4566.0 8 4860.0 9 5185.5 10 5511.0 11 5531.5 12 5552.0 13 5236.5 14 4921.0 15 4595.5 16 4270.0 17 3960.0 18 3650.0 19 3468.0 20 3286.0 21 3412.5 22 3539.0 23 3549.5 24 3560.0 25 3999.5 26 4439.0 27 5351.0 28 6263.0 29 7950.5 30 9638.0 31 11817.0 32 13996.0 33 15406.0 34 16816.0 35 18921.0 36 21026.0 37 25185.0 38 29344.0 39 40584.0 40 51824.0 41 63692.0 42 75560.0 43 79263.0 44 82966.0 45 77998.0 46 73030.0 47 67076.5 48 61123.0 49 58400.5 50 55678.0 51 50380.5 52 45083.0 53 39341.5 54 33600.0 55 29370.5 56 25141.0 57 23114.5 58 21088.0 59 19706.5 60 18325.0 61 16143.0 62 13961.0 63 11980.0 64 9999.0 65 8395.0 66 6791.0 67 5764.0 68 4737.0 69 3747.0 70 2757.0 71 2257.5 72 1758.0 73 1326.5 74 895.0 75 677.5 76 460.0 77 351.0 78 242.0 79 183.5 80 125.0 81 82.0 82 39.0 83 29.0 84 19.0 85 12.0 86 5.0 87 7.0 88 9.0 89 6.0 90 3.0 91 2.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 739629.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.748625650089934 #Duplication Level Percentage of deduplicated Percentage of total 1 72.0821139763676 17.839332548682368 2 6.716033117834888 3.3242517897380397 3 3.125823353079027 2.320794960409852 4 2.1212214460702157 2.099892619589368 5 1.629726142689378 2.0166741108792237 6 1.2709641934874567 1.8872770223573723 7 1.1087234129856716 1.9207566488230716 8 0.9231049778181504 1.827646362540478 9 0.8787137434052598 1.957226174021336 >10 9.281327349843211 49.42906797629553 >50 0.7928589124461279 12.27469390487749 >100 0.06711431253130674 2.1528080615260414 >500 0.0 0.0 >1k 0.0022750614417392113 0.9495778202598846 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2677 0.3619382149699376 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1782 0.24093160219515458 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1172 0.15845782142128012 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1115 0.1507512550210984 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.009599407270401783 0.0 2 0.0 0.0 0.0 0.038127223243004264 0.0 3 0.0 0.0 0.0 0.051782718092449054 0.0 4 0.0 0.0 0.0 0.07138714139115691 0.0 5 0.0 0.0 0.0 0.1228994536450031 0.0 6 0.0 0.0 0.0 0.20942932199792058 0.0 7 0.0 0.0 0.0 0.27310989698889576 0.0 8 0.0 0.0 0.0 0.6243670813340202 0.0 9 0.0 0.0 0.0 0.7599756093933581 0.0 10 0.0 0.0 0.0 0.984818064191642 0.0 11 0.0 0.0 0.0 1.1816735146945292 0.0 12 0.0 0.0 0.0 1.361493397365436 0.0 13 0.0 0.0 0.0 1.4336917562724014 0.0 14 0.0 0.0 0.0 1.4570818613115495 0.0 15 0.0 0.0 0.0 1.4972371283440753 0.0 16 0.0 0.0 0.0 1.5949888389990117 0.0 17 0.0 0.0 0.0 1.721673974384455 0.0 18 0.0 0.0 0.0 1.9252895708524138 0.0 19 0.0 0.0 0.0 1.996406306404968 0.0 20 0.0 0.0 0.0 2.073066361648881 0.0 21 0.0 0.0 0.0 2.175685377398669 0.0 22 0.0 0.0 0.0 2.2819548719695955 0.0 23 0.0 0.0 0.0 2.419997052576359 0.0 24 0.0 0.0 0.0 2.509366182234607 0.0 25 0.0 0.0 0.0 2.583862990769697 0.0 26 0.0 0.0 0.0 2.669716844526107 0.0 27 0.0 0.0 0.0 2.748675349398144 0.0 28 0.0 0.0 0.0 2.8333123768808415 0.0 29 0.0 0.0 0.0 2.9156509547354146 0.0 30 0.0 0.0 0.0 3.0427416988787623 0.0 31 0.0 0.0 0.0 3.1514448459971147 0.0 32 0.0 0.0 0.0 3.246357295346721 0.0 33 0.0 0.0 0.0 3.3434329914051504 0.0 34 0.0 0.0 0.0 3.439967875786374 0.0 35 0.0 0.0 0.0 3.589367101614458 0.0 36 0.0 0.0 0.0 3.694690175750275 0.0 37 0.0 0.0 0.0 3.8070438016897663 0.0 38 0.0 0.0 0.0 3.9157469488081187 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGCC 20 7.854659E-4 44.000004 17 CTCACCG 20 7.854659E-4 44.000004 42 GCGACTA 40 8.305506E-9 44.000004 1 CGTATTA 20 7.854659E-4 44.000004 35 TCACCCG 20 7.854659E-4 44.000004 32 ACGCATT 20 7.854659E-4 44.000004 14 CGCATCG 40 8.305506E-9 44.000004 21 TACGGGT 40 8.305506E-9 44.000004 4 TACGGGA 175 0.0 44.000004 4 TAACCGT 20 7.854659E-4 44.000004 40 GCCGACC 20 7.854659E-4 44.000004 14 TCGTGCG 20 7.854659E-4 44.000004 10 CTCGCGA 20 7.854659E-4 44.000004 1 ACCACGG 30 2.5264872E-6 44.000004 2 CGTGTAA 20 7.854659E-4 44.000004 2 ACCGTTA 20 7.854659E-4 44.000004 42 GCGTGTA 20 7.854659E-4 44.000004 1 AGGATCG 60 0.0 44.000004 7 CGCAAAA 20 7.854659E-4 44.000004 23 TTCGCGA 20 7.854659E-4 44.000004 15 >>END_MODULE