##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545754_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 770632 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.5636244017897 31.0 31.0 33.0 30.0 34.0 2 31.762986743348318 31.0 31.0 34.0 30.0 34.0 3 31.82608560246655 31.0 31.0 34.0 30.0 34.0 4 35.710519417828486 37.0 35.0 37.0 35.0 37.0 5 27.033961735302974 35.0 22.0 37.0 0.0 37.0 6 31.319745351867038 35.0 26.0 37.0 17.0 37.0 7 15.082267541446502 0.0 0.0 32.0 0.0 37.0 8 25.152962763030864 17.0 17.0 35.0 17.0 37.0 9 33.26730138379927 32.0 32.0 37.0 28.0 39.0 10 36.110203054116624 37.0 35.0 39.0 32.0 39.0 11 37.08899967818622 39.0 37.0 39.0 34.0 39.0 12 37.00532160616221 39.0 35.0 39.0 33.0 39.0 13 36.48010464138525 39.0 35.0 39.0 33.0 39.0 14 37.80324720489157 40.0 36.0 41.0 33.0 41.0 15 38.08812377373377 40.0 36.0 41.0 33.0 41.0 16 38.159016236024456 40.0 36.0 41.0 34.0 41.0 17 38.184879423641895 40.0 36.0 41.0 34.0 41.0 18 38.17163834359331 40.0 36.0 41.0 34.0 41.0 19 38.11354965794309 40.0 36.0 41.0 34.0 41.0 20 38.12488710564835 40.0 36.0 41.0 34.0 41.0 21 37.98352521047659 40.0 36.0 41.0 34.0 41.0 22 37.90959757705364 40.0 35.0 41.0 34.0 41.0 23 37.8173187721247 40.0 35.0 41.0 34.0 41.0 24 37.69570560267417 40.0 35.0 41.0 33.0 41.0 25 37.5346559706838 39.0 35.0 41.0 33.0 41.0 26 37.2854488264178 39.0 35.0 40.0 33.0 41.0 27 37.05365596030271 39.0 35.0 40.0 33.0 41.0 28 37.11154610761038 39.0 35.0 40.0 33.0 41.0 29 37.071970797994375 39.0 35.0 40.0 33.0 41.0 30 36.89102191448058 38.0 35.0 40.0 32.0 41.0 31 36.67933202877638 38.0 35.0 40.0 32.0 41.0 32 36.438415482357335 38.0 35.0 40.0 31.0 41.0 33 36.24230631481693 38.0 35.0 40.0 31.0 41.0 34 36.0449059992318 38.0 35.0 40.0 30.0 41.0 35 35.89050934817137 38.0 35.0 40.0 30.0 41.0 36 35.71450835158675 38.0 35.0 40.0 30.0 41.0 37 35.564111015374394 38.0 35.0 40.0 29.0 41.0 38 35.41076155674823 38.0 34.0 40.0 29.0 41.0 39 35.371284867485386 38.0 34.0 40.0 29.0 41.0 40 35.16499833902563 38.0 34.0 40.0 27.0 41.0 41 34.965432268579555 38.0 34.0 40.0 27.0 41.0 42 34.97815688941025 38.0 34.0 40.0 27.0 41.0 43 34.865959368414494 37.0 34.0 40.0 27.0 41.0 44 34.65634570067166 37.0 34.0 40.0 26.0 40.0 45 34.43352469142211 37.0 34.0 40.0 26.0 40.0 46 34.42338755722576 37.0 34.0 40.0 26.0 40.0 47 34.274848436088824 36.0 33.0 39.0 25.0 40.0 48 34.204571053369186 36.0 33.0 39.0 25.0 40.0 49 34.08888678383457 36.0 33.0 39.0 24.0 40.0 50 34.13320106094738 36.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 6.0 15 9.0 16 34.0 17 94.0 18 221.0 19 469.0 20 896.0 21 1577.0 22 2634.0 23 3954.0 24 6052.0 25 8881.0 26 11367.0 27 12364.0 28 13012.0 29 14804.0 30 18244.0 31 24477.0 32 34602.0 33 65100.0 34 66584.0 35 80064.0 36 102098.0 37 191414.0 38 90184.0 39 21490.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.38843961839114 23.019158301238463 28.58562841927145 15.006773661098944 2 32.46504168007557 24.062587590445244 30.617337458086354 12.855033271392829 3 30.51274797828276 23.69042552087118 32.86159931069564 12.935227190150423 4 26.191619346198962 27.292014865720603 31.72136635904037 14.79499942904006 5 17.57855889711302 48.24663393163014 22.970756470014223 11.204050701242616 6 20.360301674469785 41.050722004796064 28.248372764172785 10.340603556561367 7 39.70377560236273 55.509763414963295 3.8781156245782684 0.9083453580956928 8 88.54550550716814 2.8662188956596664 7.232245741157907 1.3560298560142843 9 84.21970538467129 4.547176862627039 8.748274143819618 2.4848436088820605 10 51.32826044078107 23.5274424109043 13.992670950596395 11.151626197718237 11 46.630428012332736 19.826843422022446 19.826064840286932 13.716663725357888 12 41.37655846110725 20.513552512742788 24.682727942779433 13.427161083370532 13 22.30961081294314 38.20500576150484 24.66585867184337 14.819524753708643 14 16.41808282033448 40.71061155000052 28.54799696872178 14.323308660943226 15 15.250210217068588 22.019199825597692 47.93325478308713 14.797335174246593 16 16.894055787976622 17.48396121624848 46.10786990418254 19.514113091592357 17 17.873381847626362 16.803091488544467 30.274372203593934 35.049154460235236 18 21.78653365030261 21.50857997072533 35.02994944409264 21.674936934879423 19 29.24664431271995 23.63138307259496 25.94649586313571 21.175476751549375 20 31.575641810877308 22.490371539204183 24.918248917771386 21.015737732147123 21 23.279723655389343 27.317708062992452 28.840094883160834 20.56247339845737 22 23.022791682670846 23.24987802219477 26.76595313976061 26.96137715537377 23 20.548588690840763 29.13400948831608 25.76768159121345 24.549720229629706 24 20.343951458024062 22.65893448494223 38.89560776090274 18.101506296130967 25 18.857509161311757 23.453347382408204 36.28748871056484 21.401654745715206 26 17.931386186921902 32.56781446916297 28.011164862087224 21.489634481827903 27 18.854784125237465 31.32000747438466 29.883005117877275 19.942203282500596 28 16.141426776983046 26.395737524525327 39.29527971846484 18.167555980026783 29 17.10531096554516 23.77918383871939 37.54373034081118 21.571774854924268 30 19.710834743431366 28.463261323173704 31.922759501292447 19.903144432102483 31 29.66357483208587 24.761624225311174 25.63207860561202 19.942722336990936 32 30.86998723125954 25.236169793104878 26.217831597961155 17.676011377674428 33 27.936421015478203 25.880446179239897 26.247417703910557 19.935715101371343 34 20.103758992619046 26.452054936727258 29.42156567596466 24.022620394689035 35 21.248403907442203 24.695055486925018 31.806102004588443 22.250438601044337 36 29.91388886005253 25.16869270936063 25.64388709526726 19.273531335319582 37 21.816249519874596 31.90679857571448 26.82291937007547 19.454032534335454 38 21.885413530712455 32.29751684331821 23.703920937620033 22.113148688349302 39 21.491191645298922 30.33510157896376 25.95519002584891 22.218516749888405 40 24.50728752504438 25.21346115915249 25.720836923460226 24.558414392342907 41 18.321844927280466 24.49080754497607 26.73078719804005 30.456560329703414 42 22.594961019007776 25.32285189299173 24.07309844387464 28.009088644125864 43 22.101729489561812 26.140881769768193 25.517627090491963 26.239761650178036 44 20.648895971099044 28.982186049891517 28.658685338786867 21.71023264022257 45 18.926154117659273 34.94287805333804 23.137372961413487 22.9935948675892 46 21.69037880596705 31.633646150172844 26.29685764411548 20.379117399744626 47 22.97607677854021 26.76647219425095 26.693934329225883 23.56351669798295 48 22.495691847730175 23.845622813482958 30.76345129711717 22.895234041669692 49 21.582285708353663 23.530946028714094 32.34539962005211 22.54136864288013 50 20.349531293795224 31.53165194282096 26.621396464200814 21.49742029918301 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 406.0 1 747.5 2 1089.0 3 4960.0 4 8831.0 5 6516.5 6 4202.0 7 4298.5 8 4395.0 9 4652.5 10 4910.0 11 4750.0 12 4590.0 13 4337.5 14 4085.0 15 3814.0 16 3543.0 17 3326.0 18 3109.0 19 3013.5 20 2918.0 21 2938.0 22 2958.0 23 3036.0 24 3114.0 25 3750.5 26 4387.0 27 5506.0 28 6625.0 29 8144.0 30 9663.0 31 10885.5 32 12108.0 33 14021.5 34 15935.0 35 17082.5 36 18230.0 37 22311.0 38 26392.0 39 36270.5 40 46149.0 41 57703.0 42 69257.0 43 72566.0 44 75875.0 45 72721.5 46 69568.0 47 67840.5 48 66113.0 49 62422.0 50 58731.0 51 53617.0 52 48503.0 53 44538.0 54 40573.0 55 38078.0 56 35583.0 57 33971.5 58 32360.0 59 29238.0 60 26116.0 61 23205.0 62 20294.0 63 17042.0 64 13790.0 65 11402.0 66 9014.0 67 7697.5 68 6381.0 69 5401.0 70 4421.0 71 3594.5 72 2768.0 73 2246.5 74 1725.0 75 1357.0 76 989.0 77 731.0 78 473.0 79 352.5 80 232.0 81 172.0 82 112.0 83 83.0 84 54.0 85 52.0 86 50.0 87 28.5 88 7.0 89 4.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 770632.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.51014970667146 #Duplication Level Percentage of deduplicated Percentage of total 1 69.18488139598925 16.957318004540056 2 7.131222753053105 3.495746745379068 3 3.5231875291689696 2.5906156135382807 4 2.3860032635445867 2.3392518876033797 5 1.8812546640847738 2.305491672654587 6 1.5889432087716906 2.3367141553435835 7 1.3087337020372167 2.2454081274168978 8 1.1071968211510654 2.1710047872930684 9 0.9906268897071366 2.185237203315861 >10 10.319808662398856 52.90121993398215 >50 0.5329480013921288 8.0419634675738 >100 0.04298856681340654 1.5415800831792656 >500 0.0 0.0 >1k 0.0022045418878670025 0.8884483181799886 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2593 0.3364770733631617 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1727 0.22410177620446592 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1190 0.1544187108762678 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1067 0.1384577852983006 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01141919878748871 0.0 2 0.0 0.0 0.0 0.034906414475391626 0.0 3 0.0 0.0 0.0 0.04489821341444425 0.0 4 0.0 0.0 0.0 0.05748528480519885 0.0 5 0.0 0.0 0.0 0.08733091799977162 0.0 6 0.0 0.0 0.0 0.14416738469204496 0.0 7 0.0 0.0 0.0 0.1797226172803621 0.0 8 0.0 0.0 0.0 0.374887105648351 0.0 9 0.0 0.0 0.0 0.4505392976154637 0.0 10 0.0 0.0 0.0 0.6049580084917314 0.0 11 0.0 0.0 0.0 0.7666434822327648 0.0 12 0.0 0.0 0.0 0.9231384110703942 0.0 13 0.0 0.0 0.0 0.9843868409305608 0.0 14 0.0 0.0 0.0 1.006835947637783 0.0 15 0.0 0.0 0.0 1.047451961506919 0.0 16 0.0 0.0 0.0 1.1368590974680521 0.0 17 0.0 0.0 0.0 1.247806994778312 0.0 18 0.0 0.0 0.0 1.4076757778031537 0.0 19 0.0 0.0 0.0 1.4754123887925754 0.0 20 0.0 0.0 0.0 1.5432787634045821 0.0 21 0.0 0.0 0.0 1.632166844875375 0.0 22 0.0 0.0 0.0 1.7194977628751467 0.0 23 0.0 0.0 0.0 1.8220110247173749 0.0 24 0.0 0.0 0.0 1.9103800516978273 0.0 25 0.0 0.0 0.0 1.9694224999740473 0.0 26 0.0 0.0 0.0 2.042349655866873 0.0 27 0.0 0.0 0.0 2.1203375930405173 0.0 28 0.0 0.0 0.0 2.190539712859056 0.0 29 0.0 0.0 0.0 2.2751455947845405 0.0 30 0.0 0.0 0.0 2.3711706754975137 0.0 31 0.0 0.0 0.0 2.4666767017201465 0.0 32 0.0 0.0 0.0 2.550114711042365 0.0 33 0.0 0.0 0.0 2.640170665116424 0.0 34 0.0 0.0 0.0 2.7371040911874926 0.0 35 0.0 0.0 0.0 2.8585628419271454 0.0 36 0.0 0.0 0.0 2.9596487039209376 0.0 37 0.0 0.0 0.0 3.0576202389726874 0.0 38 0.0 0.0 0.0 3.1555917740244372 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGTACG 20 7.8548654E-4 44.0 1 GATACCC 20 7.8548654E-4 44.0 13 TCACACG 20 7.8548654E-4 44.0 1 GAGTACG 25 4.4414708E-5 44.0 1 GCACGAC 20 7.8548654E-4 44.0 42 TTCGTAA 40 8.305506E-9 44.0 1 CGTCTAT 20 7.8548654E-4 44.0 19 CAATTCG 35 1.4452598E-7 44.0 43 TGCGCAC 20 7.8548654E-4 44.0 21 TCTACGA 20 7.8548654E-4 44.0 26 TCTAACG 40 8.305506E-9 44.0 1 ACGGACT 30 2.5266272E-6 44.0 27 TCGTAAT 20 7.8548654E-4 44.0 23 ACCCGTA 20 7.8548654E-4 44.0 33 CAGTCGA 20 7.8548654E-4 44.0 14 ACGTACT 25 4.4414708E-5 44.0 28 TAGGCCG 20 7.8548654E-4 44.0 6 CGGTCAT 25 4.4414708E-5 44.0 27 CGCGTAG 20 7.8548654E-4 44.0 2 CGCGTAA 20 7.8548654E-4 44.0 31 >>END_MODULE