SRR1545753_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545753_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	298322
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	739	0.2477189077573897	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	696	0.23330495236690554	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	681	0.22827682839348085	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGATC	95	0.0	45.000004	16
CGACAAC	25	3.8838378E-5	45.000004	35
TAGCATA	95	0.0	45.000004	30
GCCGATG	35	1.2078817E-7	45.000004	9
CATAGGA	70	0.0	45.000004	4
CGCTAGA	25	3.8838378E-5	45.000004	24
ATTGCGG	25	3.8838378E-5	45.000004	2
GATTACC	25	3.8838378E-5	45.000004	9
CCGCAAT	25	3.8838378E-5	45.000004	33
CGGACGA	25	3.8838378E-5	45.000004	31
GTGCAAC	20	7.02488E-4	45.0	41
ATAGGCG	40	6.7866495E-9	45.0	5
GTTTCGT	20	7.02488E-4	45.0	43
TGCCACG	20	7.02488E-4	45.0	44
GCGAATA	20	7.02488E-4	45.0	1
TAGGTGC	20	7.02488E-4	45.0	6
CGATTTG	20	7.02488E-4	45.0	10
CTAACGC	20	7.02488E-4	45.0	29
CATAGGC	55	1.8189894E-12	45.0	4
CGCTAAC	20	7.02488E-4	45.0	27