SRR1545749_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545749_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	396424
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1272	0.3208685649708393	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1190	0.3001836417573104	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCG	35	1.2092278E-7	45.000004	5
CGCTATG	35	1.2092278E-7	45.000004	24
AGGTACC	105	0.0	45.0	7
TACTCGC	25	3.886166E-5	45.0	45
TCGTAAG	25	3.886166E-5	45.0	2
ATGGTCG	25	3.886166E-5	45.0	44
CGAGAAT	20	7.02769E-4	45.0	45
ATAACGG	20	7.02769E-4	45.0	2
ATAACGC	40	6.7957444E-9	45.0	11
TCGACTA	20	7.02769E-4	45.0	1
AGGCGAT	260	0.0	44.134617	7
CGTTTTA	685	0.0	43.357666	1
CGTTTTT	910	0.0	42.774723	1
GGTACCT	175	0.0	42.42857	8
CGGTAGT	75	0.0	42.000004	12
CGGTCTA	65	0.0	41.538464	31
TAACGGG	60	3.6379788E-12	41.250004	3
ATCCTGC	175	0.0	41.142857	20
GCAAGGA	510	0.0	41.02941	4
ATAGGCG	55	6.002665E-11	40.909092	5