SRR1545745_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545745_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	706299
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2731	0.38666343857204954	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2351	0.3328618616195124	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	723	0.10236457930706401	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTACCG	20	7.031436E-4	45.000004	43
CGCGAAG	40	6.8084773E-9	45.000004	2
TCGATAG	40	6.8084773E-9	45.000004	2
GCGTAAA	20	7.031436E-4	45.000004	1
GTACGAA	20	7.031436E-4	45.000004	1
GCGCGAA	25	3.889273E-5	45.0	1
CGTTTTA	1635	0.0	43.623856	1
CGTTATT	350	0.0	42.42857	1
CGTTTTT	2425	0.0	42.216496	1
AGGCGAT	535	0.0	41.635517	7
GCGATAT	60	3.6379788E-12	41.249996	9
GACGGTC	55	6.002665E-11	40.909092	29
ATAGCGG	45	1.9264917E-8	40.0	2
TCGTCCC	90	0.0	40.0	38
TATACGG	45	1.9264917E-8	40.0	2
TAAGGAT	640	0.0	39.375004	5
TCGAGGA	40	3.455698E-7	39.375004	4
GTTTTAT	1940	0.0	38.621136	2
GGCGATA	315	0.0	38.57143	8
ATTAGCG	35	6.2448707E-6	38.571426	1