##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545744_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1322512 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.46072701041654 31.0 31.0 33.0 30.0 34.0 2 31.654158903662122 31.0 31.0 34.0 30.0 34.0 3 31.707849153731686 31.0 31.0 34.0 30.0 34.0 4 35.623634416927786 37.0 35.0 37.0 33.0 37.0 5 27.066458376181085 35.0 25.0 37.0 0.0 37.0 6 31.30511556794948 35.0 26.0 37.0 17.0 37.0 7 15.026413370918373 0.0 0.0 32.0 0.0 37.0 8 25.103618719527688 17.0 17.0 35.0 17.0 37.0 9 33.11519517403245 32.0 32.0 37.0 28.0 39.0 10 35.910581529695 37.0 35.0 39.0 32.0 39.0 11 36.90385418052917 38.0 37.0 39.0 34.0 39.0 12 37.032873803791574 39.0 37.0 39.0 33.0 39.0 13 36.657866998560316 39.0 35.0 39.0 33.0 39.0 14 37.95503405640176 40.0 37.0 41.0 33.0 41.0 15 38.18872721003666 40.0 37.0 41.0 33.0 41.0 16 38.24193882550782 40.0 37.0 41.0 33.0 41.0 17 38.24992060563534 40.0 37.0 41.0 34.0 41.0 18 38.22845690625113 40.0 37.0 41.0 34.0 41.0 19 38.177277030378555 40.0 37.0 41.0 34.0 41.0 20 38.210742133152664 40.0 37.0 41.0 34.0 41.0 21 38.097490986849266 40.0 36.0 41.0 34.0 41.0 22 38.00569597856201 40.0 36.0 41.0 34.0 41.0 23 37.902575553189685 40.0 36.0 41.0 33.0 41.0 24 37.74363559650121 40.0 35.0 41.0 33.0 41.0 25 37.56276011106137 39.0 35.0 41.0 33.0 41.0 26 37.318901454202305 39.0 35.0 40.0 33.0 41.0 27 37.12726689814535 39.0 35.0 40.0 32.0 41.0 28 37.12582948207653 39.0 35.0 40.0 32.0 41.0 29 37.01815786926697 39.0 35.0 40.0 32.0 41.0 30 36.79780750571639 39.0 35.0 40.0 31.0 41.0 31 36.64080325925209 38.0 35.0 40.0 31.0 41.0 32 36.45251612083671 38.0 35.0 40.0 31.0 41.0 33 36.24027759294434 38.0 35.0 40.0 30.0 41.0 34 35.97310799448323 38.0 35.0 40.0 30.0 41.0 35 35.76364978162769 38.0 35.0 40.0 29.0 41.0 36 35.581273364627314 38.0 35.0 40.0 28.0 41.0 37 35.492018219872485 38.0 35.0 40.0 28.0 41.0 38 35.294342886869835 38.0 34.0 40.0 27.0 41.0 39 35.2160827274157 38.0 34.0 40.0 27.0 41.0 40 34.96342490654149 38.0 34.0 40.0 26.0 41.0 41 34.728003224167345 38.0 34.0 40.0 25.0 40.0 42 34.73141037661662 38.0 34.0 40.0 25.0 40.0 43 34.60961790894903 37.0 34.0 40.0 24.0 40.0 44 34.372515334454434 37.0 33.0 40.0 24.0 40.0 45 34.15098312907558 37.0 33.0 40.0 23.0 40.0 46 34.09879985966101 36.0 33.0 39.0 23.0 40.0 47 33.93070686693202 36.0 33.0 39.0 23.0 40.0 48 33.82164623080925 36.0 33.0 39.0 23.0 40.0 49 33.66459283545253 36.0 33.0 39.0 23.0 40.0 50 33.76750532320312 36.0 33.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 3.0 13 2.0 14 12.0 15 36.0 16 87.0 17 233.0 18 494.0 19 1008.0 20 1895.0 21 3157.0 22 5027.0 23 7493.0 24 11533.0 25 16600.0 26 21189.0 27 22759.0 28 24343.0 29 27135.0 30 32944.0 31 43550.0 32 59141.0 33 96626.0 34 107308.0 35 138979.0 36 191606.0 37 331585.0 38 140163.0 39 37601.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.15454831411738 23.233437579394366 27.28375999612858 15.32825411035968 2 34.75159393638772 23.483189566521894 29.248732714712606 12.516483782377778 3 30.918963306193064 22.987768731020967 33.243781530904826 12.849486431881147 4 27.61895544237028 26.225773376725503 30.938849704199285 15.216421476704936 5 17.337007150029642 47.407584959531555 23.670635880808643 11.584772009630157 6 19.701598170753837 41.376562178641855 28.610704477539713 10.311135173064592 7 38.91042198482887 55.5741649225111 4.427029773642886 1.0883833190171432 8 86.16080610232648 2.940086744014421 8.84271749519097 2.0563896584681274 9 81.11170257812405 4.943319984998245 10.602247843497828 3.342729593379871 10 43.94667118332386 25.102910219340163 17.408764532949416 13.54165406438656 11 36.494338047594276 23.333474478870514 23.687119663186422 16.48506781034879 12 33.25701392501543 21.220525787289642 29.347862250021173 16.17459803767376 13 23.953355432691726 29.03444354380149 29.44305987393687 17.56914114956991 14 19.363907473051285 32.3005008650205 30.829814776727925 17.505776885200287 15 17.68656919559142 23.635399905634127 40.548970444124514 18.129060454649938 16 20.454483588806756 18.846407442805813 39.37174105036476 21.32736791802267 17 20.13819156272306 19.815850442188804 30.725619124817015 29.320338870271122 18 22.474503066890886 23.45899318871965 33.149491271156705 20.917012473232756 19 27.325725588879347 24.741325598557896 26.949849982457625 20.98309883010513 20 28.094943561948778 23.75479390735207 26.481952526706753 21.668310003992403 21 24.322047739453403 25.263513677002553 29.89560775251945 20.518830831024594 22 23.596080791705482 22.634426001427585 28.23467764375673 25.534815563110204 23 21.998514947312387 26.805427852450485 27.528143411931232 23.667913788305892 24 21.537876404902185 24.902836420387867 34.01874614370229 19.540541031007656 25 22.765918192046648 23.824736561936678 31.37929939388074 22.030045852135935 26 19.94787192857229 27.779634513713297 28.225074706316466 24.047418851397946 27 20.34779268543499 26.764672078589836 30.640629347786636 22.24690588818854 28 19.50901012618411 26.084905089708073 33.867896850841426 20.538187933266393 29 20.05652878764049 25.07122808715535 33.01179875872582 21.860444366478337 30 22.098551846788535 25.422680474732935 31.81869049203334 20.66007718644519 31 27.380696734698816 24.55032544128144 27.030832234414508 21.038145589605236 32 26.8446713526985 25.149639473970748 27.403910134652843 20.601779038677908 33 26.16921434361276 24.452405724862988 27.06395102653133 22.314428904992923 34 21.2438148009243 26.24482802424477 29.333041968617295 23.17831520621363 35 22.04335385992717 24.82238346419541 29.697121840860426 23.437140835016997 36 27.428787035580775 25.501923612035277 26.082561065608477 20.98672828677547 37 21.80025587669526 29.788085098660734 27.024253844199524 21.38740518044449 38 23.14194502582963 29.404950578898337 25.522036851083392 21.931067544188636 39 22.127889954873755 26.99204241625029 25.94161716491041 24.938450463965545 40 23.6903710514536 24.63418101310234 28.136304245254486 23.53914369018958 41 21.039431022175982 23.73944433018377 28.29116106318884 26.929963584451404 42 22.53045719055857 26.43023276915446 25.69163833674099 25.347671703545977 43 22.435259566642873 25.549484617152814 26.84270539700207 25.172550419202246 44 21.99034866980413 26.604371075649976 28.750211718305767 22.655068536240126 45 20.98718196885926 29.3538357307911 26.433030475337844 23.225951825011794 46 22.934158631452874 27.271208125143666 28.140538611369877 21.654094632033587 47 22.53068403160047 27.25888309520065 27.841713345512176 22.368719527686707 48 22.336432486056836 26.20029156635252 28.66325598557896 22.800019962011685 49 22.206830637453574 25.984641349190024 29.67814280702179 22.130385206334612 50 20.63792237802001 27.149318871964866 29.514287961092222 22.698470788922897 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 723.0 1 1455.5 2 2188.0 3 11387.0 4 20586.0 5 14437.5 6 8289.0 7 8201.0 8 8113.0 9 8150.0 10 8187.0 11 8089.0 12 7991.0 13 7561.0 14 7131.0 15 6664.5 16 6198.0 17 5908.5 18 5619.0 19 5745.5 20 5872.0 21 5889.0 22 5906.0 23 6379.5 24 6853.0 25 8186.5 26 9520.0 27 11467.5 28 13415.0 29 15865.0 30 18315.0 31 21868.5 32 25422.0 33 28626.0 34 31830.0 35 33940.0 36 36050.0 37 40376.0 38 44702.0 39 55090.0 40 65478.0 41 75873.5 42 86269.0 43 90181.5 44 94094.0 45 98366.0 46 102638.0 47 105981.5 48 109325.0 49 104047.0 50 98769.0 51 90842.5 52 82916.0 53 78301.5 54 73687.0 55 72812.5 56 71938.0 57 69256.5 58 66575.0 59 60559.0 60 54543.0 61 49076.0 62 43609.0 63 38293.0 64 32977.0 65 28228.0 66 23479.0 67 19966.0 68 16453.0 69 13837.5 70 11222.0 71 9402.0 72 7582.0 73 5884.0 74 4186.0 75 3086.5 76 1987.0 77 1552.5 78 1118.0 79 762.5 80 407.0 81 291.5 82 176.0 83 131.5 84 87.0 85 65.5 86 44.0 87 36.5 88 29.0 89 20.5 90 12.0 91 7.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1322512.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.1893314419368 #Duplication Level Percentage of deduplicated Percentage of total 1 70.18402289645462 20.486247062530953 2 7.71653885535573 4.50481220467124 3 3.8331189244211568 3.356585362238683 4 2.66866399575604 3.1158607151714586 5 2.0149021252066563 2.940682297785997 6 1.5916373973005136 2.78752989151118 7 1.334122083728974 2.7259492180180667 8 1.121660026252444 2.61924050171633 9 0.9439519276484087 2.4797993113246095 >10 8.324473788883383 46.81042742783757 >50 0.22017791742456205 3.9752716253678155 >100 0.04193723474427294 2.327663883710514 >500 0.0035946201174601932 0.6614619011617177 >1k 8.986550293650483E-4 0.6129342930791329 >5k 2.995516764550161E-4 0.5955343038747467 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6811 0.5150047787846159 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3009 0.22752156502171625 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2897 0.21905283279093118 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.011946961539857484 0.0 2 0.0 0.0 0.0 0.04279734323771731 0.0 3 0.0 0.0 0.0 0.059810421379919425 0.0 4 0.0 0.0 0.0 0.07999927410866593 0.0 5 0.0 0.0 0.0 0.13247516846728044 0.0 6 0.0 0.0 0.0 0.24597130309592655 0.0 7 0.0 0.0 0.0 0.3201483237959277 0.0 8 0.0 0.0 0.0 0.6805987393687165 0.0 9 0.0 0.0 0.0 0.8364385351512879 0.0 10 0.0 0.0 0.0 1.0855099991531267 0.0 11 0.0 0.0 0.0 1.30463844562469 0.0 12 0.0 0.0 0.0 1.4902700315762731 0.0 13 0.0 0.0 0.0 1.5816869714603723 0.0 14 0.0 0.0 0.0 1.6242574736561937 0.0 15 0.0 0.0 0.0 1.6724990018994157 0.0 16 0.0 0.0 0.0 1.773216424501252 0.0 17 0.0 0.0 0.0 1.8883004464231705 0.0 18 0.0 0.0 0.0 2.0666731190340806 0.0 19 0.0 0.0 0.0 2.1391110250795458 0.0 20 0.0 0.0 0.0 2.223873961068028 0.0 21 0.0 0.0 0.0 2.327086635130721 0.0 22 0.0 0.0 0.0 2.447236773654984 0.0 23 0.0 0.0 0.0 2.5759312580906637 0.0 24 0.0 0.0 0.0 2.6802781373628366 0.0 25 0.0 0.0013610462513761689 0.0 2.7645873912675274 0.0 26 0.0 0.0013610462513761689 0.0 2.847686826282106 0.0 27 0.0 0.0013610462513761689 0.0 2.94757249839699 0.0 28 0.0 0.0013610462513761689 0.0 3.0405773255743616 0.0 29 0.0 0.0014366599320081784 0.0 3.157098007428288 0.0 30 7.56136806320094E-5 0.0014366599320081784 0.0 3.28549003714144 0.0 31 7.56136806320094E-5 0.0014366599320081784 0.0 3.4027668558016866 0.0 32 7.56136806320094E-5 0.0014366599320081784 0.0 3.5076430308382833 0.0 33 7.56136806320094E-5 0.0014366599320081784 0.0 3.617509708796593 0.0 34 7.56136806320094E-5 0.0014366599320081784 0.0 3.735315823221264 0.0 35 7.56136806320094E-5 0.0014366599320081784 0.0 3.885408979275802 0.0 36 7.56136806320094E-5 0.0014366599320081784 0.0 4.002383343213521 0.0 37 7.56136806320094E-5 0.0014366599320081784 0.0 4.120567526041351 0.0 38 7.56136806320094E-5 0.0014366599320081784 0.0 4.261057744655625 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAACCCG 20 7.856912E-4 44.000004 23 GACGATA 20 7.856912E-4 44.000004 1 CCGGATA 25 4.443204E-5 44.0 20 TAGTACG 45 4.802132E-10 43.999996 1 CGTTTTA 3550 0.0 43.628166 1 CGTTATT 1965 0.0 42.43257 1 CGACGGT 430 0.0 41.44186 28 TCACGAC 430 0.0 40.930233 25 CACGACG 430 0.0 40.930233 26 CGTTCGA 60 3.6379788E-12 40.333336 14 GTTATTT 2240 0.0 40.267857 2 AGTACGG 115 0.0 40.173916 2 AGGCGAT 905 0.0 40.110497 7 CGGTCTA 445 0.0 40.044945 31 ACGACGG 440 0.0 40.000004 27 GTTTTAT 4285 0.0 39.430573 2 TAACGGG 380 0.0 39.36842 3 CGAATAT 95 0.0 39.36842 14 ACGGTCT 450 0.0 39.11111 30 ATTAACG 45 2.3514076E-8 39.111107 1 >>END_MODULE