SRR1545741_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545741_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	334929
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1000	0.2985707418587223	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	997	0.2976750296331461	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	856	0.25557655503106624	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTAGCAT	75	0.0	45.000004	29
CGGGTAT	25	3.8848662E-5	45.0	6
ATAGGCG	20	7.026121E-4	45.0	5
CGACGCT	20	7.026121E-4	45.0	12
TTTCGGC	20	7.026121E-4	45.0	41
ATTCGGC	20	7.026121E-4	45.0	17
GAATAAC	35	1.208482E-7	45.0	9
GCTCTAC	20	7.026121E-4	45.0	22
TCTACTC	25	3.8848662E-5	45.0	42
CGCTCAT	20	7.026121E-4	45.0	24
AGTGATA	20	7.026121E-4	45.0	1
TGATTCG	20	7.026121E-4	45.0	15
TTGCGTA	20	7.026121E-4	45.0	1
GTACTAA	20	7.026121E-4	45.0	1
TGTTACA	20	7.026121E-4	45.0	32
TCCAATA	20	7.026121E-4	45.0	37
CCGACGC	20	7.026121E-4	45.0	11
ATGGTCG	20	7.026121E-4	45.0	44
TGGATAG	35	1.208482E-7	45.0	1
ACCGTAT	25	3.8848662E-5	45.0	6