##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545740_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 464302 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.631769839457938 31.0 31.0 33.0 30.0 34.0 2 31.810537107313774 31.0 31.0 34.0 30.0 34.0 3 31.80423086697882 31.0 31.0 34.0 30.0 34.0 4 35.694567329022924 37.0 35.0 37.0 35.0 37.0 5 27.1860147059457 35.0 26.0 37.0 0.0 37.0 6 31.409414562073824 36.0 28.0 37.0 17.0 37.0 7 14.986297711403354 0.0 0.0 32.0 0.0 37.0 8 25.143010368251698 17.0 17.0 35.0 17.0 37.0 9 33.423743597916875 32.0 32.0 37.0 28.0 39.0 10 36.24572368846139 37.0 35.0 39.0 33.0 39.0 11 37.11202407054029 39.0 37.0 39.0 34.0 39.0 12 37.03916201093254 39.0 35.0 39.0 34.0 39.0 13 36.553090445442834 39.0 35.0 39.0 33.0 39.0 14 37.89673100697391 40.0 36.0 41.0 33.0 41.0 15 38.19236832923399 40.0 36.0 41.0 33.0 41.0 16 38.24824575384125 40.0 36.0 41.0 34.0 41.0 17 38.27076773307029 40.0 36.0 41.0 34.0 41.0 18 38.2363827853423 40.0 36.0 41.0 34.0 41.0 19 38.17396435940401 40.0 36.0 41.0 34.0 41.0 20 38.168797463719734 40.0 36.0 41.0 34.0 41.0 21 38.01725385632627 40.0 36.0 41.0 34.0 41.0 22 37.89963859729228 40.0 35.0 41.0 34.0 41.0 23 37.766789718760634 39.0 35.0 41.0 34.0 41.0 24 37.621933569099426 39.0 35.0 41.0 34.0 41.0 25 37.461688728456906 39.0 35.0 41.0 33.0 41.0 26 37.224674888326994 39.0 35.0 40.0 33.0 41.0 27 36.99892957600872 39.0 35.0 40.0 33.0 41.0 28 37.052052328010646 39.0 35.0 40.0 33.0 41.0 29 37.03878940861767 39.0 35.0 40.0 33.0 41.0 30 36.794088761194224 38.0 35.0 40.0 32.0 41.0 31 36.529808185189815 38.0 35.0 40.0 32.0 41.0 32 36.19699893603732 38.0 35.0 40.0 31.0 41.0 33 35.911529564809115 38.0 35.0 40.0 30.0 41.0 34 35.623008300631916 38.0 35.0 40.0 29.0 41.0 35 35.41705829395523 38.0 35.0 40.0 27.0 41.0 36 35.216154571808865 38.0 35.0 40.0 26.0 41.0 37 35.027826716232106 38.0 34.0 40.0 25.0 41.0 38 34.8937049592722 38.0 34.0 40.0 25.0 41.0 39 34.8550081627906 38.0 34.0 40.0 25.0 41.0 40 34.61810201119099 38.0 34.0 40.0 24.0 41.0 41 34.47909765626682 38.0 34.0 40.0 23.0 40.0 42 34.48247476857735 38.0 34.0 40.0 23.0 41.0 43 34.360019986991226 37.0 34.0 40.0 23.0 41.0 44 34.13371900185655 37.0 34.0 40.0 23.0 40.0 45 33.88321825019061 37.0 33.0 40.0 23.0 40.0 46 33.86137255493192 37.0 33.0 40.0 23.0 40.0 47 33.724715809968515 36.0 33.0 39.0 23.0 40.0 48 33.70666075097674 36.0 33.0 39.0 23.0 40.0 49 33.63337439855956 36.0 33.0 39.0 22.0 40.0 50 33.67576491163079 36.0 33.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 2.0 14 2.0 15 8.0 16 21.0 17 41.0 18 151.0 19 348.0 20 611.0 21 1124.0 22 1935.0 23 3083.0 24 4991.0 25 7229.0 26 9093.0 27 9067.0 28 8435.0 29 8905.0 30 10410.0 31 13821.0 32 20008.0 33 39031.0 34 38332.0 35 46256.0 36 58388.0 37 116901.0 38 53025.0 39 13083.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.606157199409008 23.050514535797824 28.818958350384015 17.524369914409156 2 34.05046715284448 23.91805333597529 30.145034912621526 11.886444598558697 3 27.80690154253051 22.758893995718303 37.10300623301214 12.331198228739053 4 24.727224952724736 26.602513019543316 34.747642698071516 13.922619329660439 5 16.721659609478316 47.20892867142506 25.938720918712388 10.130690800384233 6 19.02877868284005 38.70799608875258 31.97767832143734 10.285546906970032 7 38.436836369431965 55.71373804118871 5.136312141666415 0.713113447712911 8 87.37739660824205 2.0204522056764778 9.730520221752222 0.8716309643292511 9 83.82647500979967 3.8698950252206537 10.645226598205479 1.6584033667742117 10 51.49923971897601 26.363444482255083 14.964613548940129 7.172702249828775 11 43.24491387071346 19.330306567708085 26.3496603503754 11.075119211203054 12 39.979366877592604 21.046861740849707 26.896502707289656 12.07726867426804 13 19.4293800155933 41.192370483004595 27.324672303802267 12.053577197599838 14 14.206270918497014 42.81825191362518 29.900581948817795 13.074895219060009 15 13.001667018449197 22.96285607212547 51.52357732682608 12.511899582599256 16 14.592441988188723 18.8207244422811 49.72044057531521 16.86639299421497 17 15.788646182872354 18.241144772152605 32.36492627643215 33.605282768542885 18 20.13904743033629 22.855382918876078 38.09503297422798 18.91053667655965 19 27.20427652691567 23.22001628250578 30.13792746962107 19.43777972095748 20 29.579023997312092 22.94325675960905 28.668625162071237 18.809094081007622 21 20.977510327330055 27.34750227222799 32.29902089588242 19.375966504559532 22 21.879724834267353 22.86938242781638 30.23204724511202 25.018845492804253 23 17.32816141218431 29.56653212779613 29.293434014929936 23.81187244508962 24 18.037828826927303 23.551266201739384 42.84065112792967 15.570253843403648 25 15.04904135670318 24.644089407325403 40.765277771795084 19.541591464176335 26 15.235988645321363 34.321411495104485 31.409944389642945 19.03265546993121 27 16.197431843929166 33.145883498240366 32.913491649831364 17.743193007999103 28 14.088028912216618 27.49180490284341 42.49389406033142 15.92627212460855 29 14.40894073254046 23.25619962868995 41.78336513734595 20.551494501423644 30 17.33613036342725 29.54800970058281 35.49758562315045 17.61827431283949 31 27.060620027482113 26.068808663326887 28.867418189023525 18.00315312016748 32 28.179934611524395 26.759307519674696 29.468104811092783 15.59265305770813 33 27.022282910691747 27.082373110604735 28.384758196174044 17.510585782529475 34 18.454368062166434 27.867637873625355 30.912854133731926 22.765139930476288 35 19.21529521733699 25.735620350547705 33.58116053775345 21.46792389436186 36 28.7037316229523 24.276010010725777 29.097440889765714 17.922817476556208 37 19.343229191345287 31.324439696576796 31.317763007697575 18.014568104380338 38 19.90299417189674 32.10173550835448 27.31024204074072 20.68502827900806 39 19.89782512244186 31.661504796447137 29.193929812923486 19.246740268187516 40 22.918273020577125 26.713432205762626 27.053512584481652 23.314782189178594 41 17.349052987064454 25.09293520165754 29.197591222954028 28.360420588323983 42 22.10156320670598 26.162066930575357 25.985242363806314 25.751127498912346 43 22.326847612114527 27.279012366950823 26.96714638317302 23.42699363776163 44 19.576267170936156 31.937833565222633 28.865264418417325 19.620634845423883 45 17.145090910657288 37.63778747453166 24.327269751153345 20.889851863657704 46 21.826526700294206 31.986939535044 27.574509694121495 18.612024070540294 47 21.24931617783253 28.254670451559544 28.106275656792345 22.389737713815578 48 22.89673531451512 25.215484749150335 31.385606781792884 20.502173154541655 49 20.873698584111203 24.429358477887238 32.4342776899518 22.26266524804976 50 19.390827521742317 32.84629400691791 27.930743352387022 19.832135118952753 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 294.0 1 439.5 2 585.0 3 3602.0 4 6619.0 5 5102.0 6 3585.0 7 3710.0 8 3835.0 9 4146.5 10 4458.0 11 4529.0 12 4600.0 13 4411.5 14 4223.0 15 3883.5 16 3544.0 17 3375.5 18 3207.0 19 3026.5 20 2846.0 21 2801.0 22 2756.0 23 2882.5 24 3009.0 25 3675.0 26 4341.0 27 4706.0 28 5071.0 29 6391.0 30 7711.0 31 8989.5 32 10268.0 33 11482.5 34 12697.0 35 13766.5 36 14836.0 37 17373.0 38 19910.0 39 26764.0 40 33618.0 41 40788.0 42 47958.0 43 49115.0 44 50272.0 45 47971.5 46 45671.0 47 42304.5 48 38938.0 49 36445.0 50 33952.0 51 30709.0 52 27466.0 53 23462.0 54 19458.0 55 16942.5 56 14427.0 57 12770.5 58 11114.0 59 9627.0 60 8140.0 61 6985.0 62 5830.0 63 4636.5 64 3443.0 65 2664.5 66 1886.0 67 1601.5 68 1317.0 69 1141.0 70 965.0 71 810.0 72 655.0 73 520.0 74 385.0 75 279.5 76 174.0 77 152.5 78 131.0 79 95.0 80 59.0 81 42.0 82 25.0 83 18.5 84 12.0 85 9.0 86 6.0 87 3.5 88 1.0 89 0.5 90 0.0 91 0.5 92 1.0 93 1.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 464302.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.697140366197566 #Duplication Level Percentage of deduplicated Percentage of total 1 67.78551120257225 22.16392374584962 2 8.694643348423476 5.685799479948567 3 4.7674943822771825 4.676502990371262 4 3.228063699307962 4.221938075491976 5 2.356623495651675 3.8527424613800996 6 1.9020681370037675 3.7315313317010457 7 1.5243694212631542 3.4889764655886486 8 1.2845949929592468 3.360206623880245 9 1.036685026526205 3.0506972245076316 >10 7.332093323948173 42.90199061262132 >50 0.08244663344749235 1.6656317890751837 >100 0.0027031683097538473 0.12285636438389522 >500 0.0020273762323153857 0.5826838720869275 >1k 6.757920774384618E-4 0.49451896311359256 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2238 0.4820138616676215 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 939 0.2022390599222058 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 874 0.188239550981904 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 824 0.17747069795090264 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00689206593984088 0.0 2 0.0 0.0 0.0 0.02735288669874349 0.0 3 0.0 0.0 0.0 0.036398723244784645 0.0 4 0.0 0.0 0.0 0.04867521570012621 0.0 5 0.0 0.0 0.0 0.07258206942894926 0.0 6 0.0 0.0 0.0 0.11178069446179427 0.0 7 0.0 0.0 0.0 0.13827207291805765 0.0 8 0.0 0.0 0.0 0.3092814590503595 0.0 9 0.0 0.0 0.0 0.3728176919332676 0.0 10 0.0 0.0 0.0 0.501613174184044 0.0 11 0.0 0.0 0.0 0.6762839703468863 0.0 12 0.0 0.0 0.0 0.8098177479313033 0.0 13 0.0 0.0 0.0 0.8744308661173116 0.0 14 0.0 0.0 0.0 0.8994146051492348 0.0 15 0.0 0.0 0.0 0.9312904101209988 0.0 16 0.0 0.0 0.0 1.0135644472778493 0.0 17 0.0 0.0 0.0 1.121683731709103 0.0 18 0.0 0.0 0.0 1.2756783300524228 0.0 19 0.0 0.0 0.0 1.348260399481372 0.0 20 0.0 0.0 0.0 1.418042567122261 0.0 21 0.0 0.0 0.0 1.511946965552593 0.0 22 0.0 0.0 0.0 1.6112357904984256 0.0 23 0.0 0.0 0.0 1.7413235351129221 0.0 24 0.0 0.0 0.0 1.8403969829981348 0.0 25 0.0 0.0 0.0 1.9086715112146835 0.0 26 0.0 0.0 0.0 1.9874995154016135 0.0 27 0.0 0.0 0.0 2.063958371921723 0.0 28 0.0 0.0 0.0 2.149463064987874 0.0 29 0.0 0.0 0.0 2.2293679544779046 0.0 30 0.0 0.0 0.0 2.343948550727759 0.0 31 0.0 0.0 0.0 2.4563753763714136 0.0 32 0.0 0.0 0.0 2.546187610649965 0.0 33 0.0 0.0 0.0 2.6362152219891364 0.0 34 0.0 0.0 0.0 2.7406730963898496 0.0 35 0.0 0.0 0.0 2.871191595125586 0.0 36 0.0 0.0 0.0 2.9922335031940417 0.0 37 0.0 0.0 0.0 3.102075804110256 0.0 38 0.0 0.0 0.0 3.2078259408746894 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGTACG 40 8.294592E-9 44.000004 1 CGCATAG 20 7.8516273E-4 44.000004 2 TAGCGCA 20 7.8516273E-4 44.000004 1 CCAATCG 20 7.8516273E-4 44.000004 18 ATCCGCA 20 7.8516273E-4 44.000004 1 ACGATAA 20 7.8516273E-4 44.000004 1 CGTAGGA 20 7.8516273E-4 44.000004 4 AGCGCAG 30 2.5244444E-6 44.000004 2 ATGACGG 20 7.8516273E-4 44.000004 2 GCGATAA 20 7.8516273E-4 44.000004 9 CGTGTGA 20 7.8516273E-4 44.000004 19 CGTAAAC 20 7.8516273E-4 44.000004 23 CCGCCCC 20 7.8516273E-4 44.000004 11 GCGAATG 25 4.4387285E-5 44.0 1 GCGAATA 25 4.4387285E-5 44.0 1 GCGCGCT 25 4.4387285E-5 44.0 29 GCGCGAC 115 0.0 44.0 9 CTATACG 25 4.4387285E-5 44.0 17 CGTTAAG 45 4.783942E-10 44.0 2 TGTTACG 25 4.4387285E-5 44.0 1 >>END_MODULE