##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545739_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 180484 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.119999556747413 31.0 31.0 33.0 30.0 34.0 2 31.25599499124576 31.0 31.0 33.0 30.0 34.0 3 31.14101527005164 31.0 31.0 34.0 28.0 34.0 4 35.096429600407795 35.0 35.0 37.0 32.0 37.0 5 32.91132731987323 35.0 35.0 37.0 28.0 37.0 6 34.09480064714878 35.0 35.0 37.0 29.0 37.0 7 15.349271957625053 0.0 0.0 35.0 0.0 37.0 8 24.99803860730037 17.0 17.0 35.0 17.0 37.0 9 32.95066044635536 32.0 32.0 37.0 28.0 39.0 10 35.732353006360675 37.0 35.0 38.0 32.0 39.0 11 36.56039870570245 37.0 35.0 39.0 32.0 39.0 12 36.38554664125352 37.0 35.0 39.0 32.0 39.0 13 36.03318853748809 37.0 35.0 39.0 32.0 39.0 14 37.10236918508012 39.0 35.0 40.0 32.0 41.0 15 37.50548525077015 39.0 36.0 41.0 32.0 41.0 16 37.588838899847076 39.0 35.0 41.0 33.0 41.0 17 37.53985394827242 39.0 35.0 41.0 33.0 41.0 18 37.44480951220053 39.0 36.0 41.0 32.0 41.0 19 37.346102701624524 39.0 36.0 41.0 32.0 41.0 20 37.4156711952306 39.0 35.0 41.0 32.0 41.0 21 37.26096496088296 39.0 35.0 41.0 32.0 41.0 22 37.28606413864941 39.0 35.0 41.0 32.0 41.0 23 37.263208927107115 39.0 35.0 41.0 33.0 41.0 24 37.092074643735735 39.0 35.0 41.0 32.0 41.0 25 36.85567695751424 38.0 35.0 40.0 32.0 41.0 26 36.74742359433523 38.0 35.0 40.0 32.0 41.0 27 36.66030783892201 38.0 35.0 40.0 31.0 41.0 28 36.61202655082999 38.0 35.0 40.0 31.0 41.0 29 36.662906407216155 38.0 35.0 40.0 31.0 41.0 30 36.38336916291749 38.0 35.0 40.0 31.0 41.0 31 36.191667959486715 38.0 35.0 40.0 30.0 41.0 32 35.99447596462844 38.0 35.0 40.0 30.0 41.0 33 35.7129330023714 38.0 35.0 40.0 29.0 41.0 34 35.51349150063164 38.0 34.0 40.0 27.0 41.0 35 35.288291482901535 38.0 34.0 40.0 26.0 41.0 36 35.084112719132996 38.0 34.0 40.0 25.0 41.0 37 34.922037410518385 38.0 34.0 40.0 24.0 41.0 38 34.85969393408834 38.0 34.0 40.0 24.0 41.0 39 34.79227521553157 38.0 34.0 40.0 24.0 41.0 40 34.640771481128525 38.0 34.0 40.0 23.0 41.0 41 34.54214778041267 38.0 34.0 40.0 23.0 41.0 42 34.50227721016822 38.0 34.0 40.0 23.0 41.0 43 34.40330444803971 38.0 33.0 40.0 23.0 41.0 44 34.16092285188715 37.0 33.0 40.0 22.0 41.0 45 34.095775802841246 37.0 33.0 40.0 22.0 41.0 46 34.104108951486005 37.0 33.0 40.0 22.0 41.0 47 34.058021763702044 37.0 33.0 40.0 22.0 41.0 48 34.050674852064446 37.0 33.0 40.0 22.0 41.0 49 33.99210456328539 37.0 33.0 40.0 22.0 41.0 50 33.830527913831695 37.0 33.0 40.0 20.0 41.0 51 33.68025974601627 36.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 2.0 15 5.0 16 19.0 17 52.0 18 110.0 19 202.0 20 314.0 21 624.0 22 899.0 23 1520.0 24 2286.0 25 3089.0 26 3630.0 27 3497.0 28 3457.0 29 3863.0 30 4737.0 31 6223.0 32 8477.0 33 13157.0 34 17092.0 35 17617.0 36 20249.0 37 32341.0 38 30853.0 39 6169.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.38718113516988 23.69129673544469 29.108397420269945 16.813124709115492 2 33.42235322798697 23.868597770439486 30.616564349194388 12.092484652379158 3 28.32273220894927 22.667383258349773 36.68303007468806 12.326854458012898 4 25.190598612619404 27.09935506748521 33.58192415948228 14.128122160413112 5 20.379645841182597 35.716739433966445 31.395580771702754 12.508033953148201 6 18.921898894084794 39.388533055561716 31.495312603887328 10.194255446466169 7 37.37727443983954 56.61332860530573 5.50741339952572 0.5019835553290043 8 88.41725582323086 2.0694355178298354 8.713237738525299 0.800070920413998 9 84.6274462002172 4.001462733538707 9.623013674342323 1.7480773919017751 10 51.965271159770396 26.95474391081758 14.087675361804925 6.9923095676071005 11 43.575053744376234 19.80618780612132 25.779570488242726 10.839187961259723 12 40.1404002570865 21.32986857560781 26.25274262538508 12.276988541920614 13 19.707010039671108 41.819219432193435 26.39901597925578 12.07475454887968 14 14.269962988408944 43.57671594157931 29.00312493074178 13.150196139269962 15 12.967908512665943 23.49183307107555 51.117550586201546 12.422707830056957 16 14.860042995500985 19.11028124376676 49.204361605460875 16.825314155271382 17 15.926619534141532 18.5539992464706 31.764588550785668 33.7547926686022 18 20.247224130670862 23.05910773254139 37.69974069723632 18.993927439551427 19 27.714922098357746 23.406506947984308 29.58378582034973 19.294785133308213 20 30.222069546330978 23.179339996897234 27.930453669023294 18.668136787748498 21 21.219055428736063 27.938210589304312 31.530218745151924 19.312515236807695 22 22.049599964539794 23.195407903193637 29.392079076261606 25.362913056004967 23 17.53451829525055 29.856940227388577 28.669023292923473 23.939518184437404 24 17.932337492520112 23.718445956428273 42.70461647569868 15.64460007535294 25 15.171427938210588 24.9556747412513 40.65291106136832 19.21998625916979 26 15.194144633319299 34.96764256111345 30.83154185412557 19.006670951441677 27 16.025797300591744 34.39640078898961 32.02167505152811 17.55612685889054 28 14.263868265330998 28.1692560005319 41.66075663216684 15.906119101970258 29 14.373573280734025 23.663593448726758 41.301167970568024 20.661665299971187 30 17.456395026705966 30.587752931007735 34.65958201281 17.296270029476297 31 27.716584295560825 26.497085614237275 28.132133596329865 17.654196493872032 32 28.995922076195118 26.53864054431418 29.00312493074178 15.46231244874892 33 27.7625717515126 27.07608430664214 27.647326078765982 17.514017863079275 34 18.908047250725826 27.803018550120782 29.936725693136236 23.352208506017156 35 19.120808492719576 25.8161388267104 33.60741118326278 21.45564149730724 36 29.341659094434963 24.585558830699675 28.523304004787125 17.549478070078234 37 19.464329248021986 32.08262228230757 30.97061235344961 17.48243611622083 38 19.73637552359212 32.869395625096956 27.005717958378582 20.388510892932338 39 19.894284257884358 32.38347997606436 28.91336628177567 18.808869484275615 40 23.340019059861262 26.82121406883713 26.64502116531105 23.19374570599056 41 17.33837902528756 25.196693335697347 28.852973116730567 28.61195452228452 42 21.92050264843421 25.81503069524168 25.658230092418165 26.606236563905945 43 22.332727554797103 26.78963232197868 26.987433789144745 23.890206334079476 44 19.176769131889806 31.85767159415793 29.374903038496488 19.590656235455775 45 17.048048580483588 38.19618359522174 24.20491567119523 20.550852153099445 46 21.752066665189158 32.602335941136054 27.153099443718006 18.492497949956782 47 20.811263048248044 28.568183329270187 27.734868464794665 22.885685157687107 48 22.36430930165555 25.67263580151149 31.70197912280313 20.26107577402983 49 20.949779481837723 25.00997318321846 32.51700981804481 21.523237516899005 50 19.66656324106292 33.523747257374616 27.307683783604087 19.50200571795838 51 18.55510737793932 34.254559960993774 25.832760798741162 21.35757186232575 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 131.0 1 164.0 2 197.0 3 1191.5 4 2186.0 5 1678.0 6 1170.0 7 1243.0 8 1316.0 9 1386.0 10 1456.0 11 1501.0 12 1546.0 13 1473.0 14 1400.0 15 1334.5 16 1269.0 17 1208.5 18 1148.0 19 1073.0 20 998.0 21 993.5 22 989.0 23 1063.0 24 1137.0 25 1310.0 26 1673.5 27 1864.0 28 2273.0 29 2682.0 30 3196.5 31 3711.0 32 4357.0 33 5003.0 34 5443.0 35 5883.0 36 6419.5 37 6956.0 38 9278.0 39 11600.0 40 14203.0 41 16806.0 42 18086.0 43 19366.0 44 18451.0 45 17536.0 46 16697.5 47 15859.0 48 14819.0 49 13779.0 50 12624.5 51 11470.0 52 10172.0 53 8874.0 54 7811.5 55 6749.0 56 5911.0 57 5073.0 58 4403.5 59 3734.0 60 3177.0 61 2620.0 62 2159.0 63 1698.0 64 1313.5 65 929.0 66 757.5 67 586.0 68 502.0 69 418.0 70 380.0 71 342.0 72 282.5 73 223.0 74 178.5 75 106.0 76 78.0 77 61.5 78 45.0 79 35.5 80 26.0 81 18.0 82 10.0 83 6.0 84 2.0 85 1.5 86 1.0 87 1.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 180484.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.8587354003679 #Duplication Level Percentage of deduplicated Percentage of total 1 66.973647641426 29.37379490702777 2 11.182697895348543 9.809179761086856 3 5.837691705197201 7.681013275414996 4 3.8757927183607466 6.799494692050264 5 2.8297834710326186 6.205536224817712 6 1.9871649106849594 5.22927240087764 7 1.633441976805882 5.014848961680814 8 1.2115010485358397 4.250792314000133 9 0.9487354405113823 3.744930298530617 >10 3.5119634149422674 20.91321114337005 >50 0.0025265923848505523 0.08310986015380864 >100 0.0025265923848505523 0.22605881961835955 >500 0.0025265923848505523 0.6687573413709802 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 663 0.36734558187983424 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 544 0.301411759491146 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 303 0.16788191751069345 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.004986591609228519 0.0 2 0.0 0.0 0.0 0.025487023780501317 0.0 3 0.0 0.0 0.0 0.02991954965537111 0.0 4 0.0 0.0 0.0 0.038784601405110704 0.0 5 0.0 0.0 0.0 0.06316349371689457 0.0 6 0.0 0.0 0.0 0.08865051749739589 0.0 7 0.0 0.0 0.0 0.10194809512200527 0.0 8 0.0 0.0 0.0 0.22384255668092462 0.0 9 0.0 0.0 0.0 0.2764788014450034 0.0 10 0.0 0.0 0.0 0.3800890937700849 0.0 11 0.0 0.0 0.0 0.5235921189689945 0.0 12 0.0 0.0 0.0 0.6360674630438156 0.0 13 0.0 0.0 0.0 0.6859333791361008 0.0 14 0.0 0.0 0.0 0.7036634826355799 0.0 15 0.0 0.0 0.0 0.7346911637596685 0.0 16 0.0 0.0 0.0 0.8122603665698899 0.0 17 0.0 0.0 0.0 0.9047893442077968 0.0 18 0.0 0.0 0.0 1.0239134770949225 0.0 19 0.0 0.0 0.0 1.0887391680148932 0.0 20 0.0 0.0 0.0 1.153564858934864 0.0 21 0.0 0.0 0.0 1.2427694421666187 0.0 22 0.0 0.0 0.0 1.328095565257862 0.0 23 0.0 0.0 0.0 1.4322599233173023 0.0 24 0.0 0.0 0.0 1.5048425345182952 0.0 25 0.0 0.0 0.0 1.5724385541100596 0.0 26 0.0 0.0 0.0 1.6389264422331065 0.0 27 0.0 0.0 0.0 1.702089935950001 0.0 28 0.0 0.0 0.0 1.7724562842135592 0.0 29 0.0 0.0 0.0 1.855012078633009 0.0 30 0.0 0.0 0.0 1.9608386338955253 0.0 31 0.0 0.0 0.0 2.058354203142661 0.0 32 0.0 0.0 0.0 2.1325990115467297 0.0 33 0.0 0.0 0.0 2.2179251346379734 0.0 34 0.0 0.0 0.0 2.3010349947917823 0.0 35 0.0 0.0 0.0 2.4184969304758317 0.0 36 0.0 0.0 0.0 2.5215531570665544 0.0 37 0.0 0.0 0.0 2.6235012521885595 0.0 38 0.0 0.0 0.0 2.7287737417167173 0.0 39 0.0 0.0 0.0 2.837924691385386 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGCGAT 95 0.0 45.000004 7 TCACGGG 20 7.0174714E-4 45.0 3 GGTACTC 20 7.0174714E-4 45.0 9 GCGACCT 35 1.2043347E-7 45.0 11 CACGGGG 45 3.8016879E-10 45.0 4 GCGCGAG 20 7.0174714E-4 45.0 2 GCGCGAC 35 1.2043347E-7 45.0 9 CGGTTTA 25 3.8777012E-5 45.0 1 GACGTGG 35 1.2043347E-7 45.0 25 ATTACGA 20 7.0174714E-4 45.0 1 TGGCGAC 35 1.2043347E-7 45.0 29 CGACCTC 35 1.2043347E-7 45.0 12 ATGCTAG 25 3.8777012E-5 45.0 2 TACGGGA 20 7.0174714E-4 45.0 4 CGCGACC 35 1.2043347E-7 45.0 10 GTGGCGA 35 1.2043347E-7 45.0 28 CGTTAAG 20 7.0174714E-4 45.0 2 AAACGTA 25 3.8777012E-5 45.0 24 GTTACGG 20 7.0174714E-4 45.0 2 AGCGGGA 25 3.8777012E-5 45.0 4 >>END_MODULE