##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545738_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 691541 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.56842038288402 31.0 31.0 33.0 30.0 34.0 2 31.756251617763805 31.0 31.0 34.0 30.0 34.0 3 31.76476882787861 31.0 31.0 34.0 30.0 34.0 4 35.63834393043941 37.0 35.0 37.0 33.0 37.0 5 26.99256298614254 35.0 22.0 37.0 0.0 37.0 6 31.283151685872564 35.0 25.0 37.0 17.0 37.0 7 15.116464533556217 0.0 0.0 32.0 0.0 37.0 8 25.196585596515607 17.0 17.0 35.0 17.0 37.0 9 33.37119274200662 32.0 32.0 37.0 28.0 39.0 10 36.24289232308713 37.0 35.0 39.0 33.0 39.0 11 37.139586806855995 39.0 37.0 39.0 34.0 39.0 12 36.77769069368266 39.0 35.0 39.0 33.0 39.0 13 35.992509482445726 38.0 35.0 39.0 32.0 39.0 14 37.275198433643126 39.0 35.0 41.0 33.0 41.0 15 37.66849977080173 40.0 35.0 41.0 33.0 41.0 16 37.8129843349852 40.0 35.0 41.0 33.0 41.0 17 37.86907934598238 40.0 35.0 41.0 34.0 41.0 18 37.851298766089066 40.0 36.0 41.0 34.0 41.0 19 37.766612536349975 39.0 36.0 41.0 34.0 41.0 20 37.745128633009465 39.0 35.0 41.0 34.0 41.0 21 37.54794148141614 39.0 35.0 41.0 33.0 41.0 22 37.464335447934396 39.0 35.0 41.0 33.0 41.0 23 37.35028870305593 39.0 35.0 41.0 33.0 41.0 24 37.21168231529295 38.0 35.0 41.0 33.0 41.0 25 37.03395315679042 38.0 35.0 41.0 33.0 41.0 26 36.82528729316122 38.0 35.0 40.0 33.0 41.0 27 36.58406515304226 38.0 35.0 40.0 32.0 41.0 28 36.646090398110886 38.0 35.0 40.0 32.0 41.0 29 36.670276961163545 38.0 35.0 40.0 32.0 41.0 30 36.474762884630124 38.0 35.0 40.0 32.0 41.0 31 36.18495360361859 38.0 35.0 40.0 31.0 41.0 32 35.80868524064372 38.0 34.0 40.0 30.0 41.0 33 35.55711230425962 38.0 34.0 40.0 30.0 41.0 34 35.32661982442111 38.0 34.0 40.0 29.0 41.0 35 35.16527581155709 38.0 34.0 40.0 27.0 41.0 36 34.967770529874585 37.0 34.0 40.0 26.0 41.0 37 34.7457403104082 37.0 34.0 40.0 25.0 41.0 38 34.60778898141976 37.0 34.0 40.0 25.0 41.0 39 34.63952824199867 37.0 34.0 40.0 25.0 41.0 40 34.405579712555 37.0 34.0 40.0 24.0 40.0 41 34.26659735286845 36.0 34.0 40.0 23.0 40.0 42 34.266530834758896 36.0 33.0 40.0 23.0 40.0 43 34.119045725416136 36.0 33.0 40.0 23.0 41.0 44 33.92419104579483 36.0 33.0 40.0 23.0 40.0 45 33.6401616100853 35.0 33.0 39.0 23.0 40.0 46 33.69724282435893 36.0 33.0 39.0 23.0 40.0 47 33.55903554525328 35.0 33.0 39.0 23.0 40.0 48 33.605859956242654 35.0 33.0 39.0 23.0 40.0 49 33.54756695553843 36.0 33.0 39.0 23.0 40.0 50 33.51251480389449 35.0 33.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 0.0 13 0.0 14 7.0 15 13.0 16 48.0 17 92.0 18 268.0 19 539.0 20 1106.0 21 1825.0 22 2998.0 23 4779.0 24 7321.0 25 10835.0 26 12974.0 27 13607.0 28 13585.0 29 14865.0 30 17857.0 31 24057.0 32 34634.0 33 72803.0 34 64059.0 35 72168.0 36 78232.0 37 152743.0 38 75403.0 39 14720.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.729775964114925 23.43765590181927 28.72367654267787 17.108891591387927 2 33.21928851651601 23.677554909976415 30.4099106199054 12.693245953602172 3 28.330930487129468 22.89553330894336 36.08679745669454 12.686738747232628 4 24.046585813422485 27.30597318163348 34.88093981412527 13.766501190818767 5 16.785121923356677 48.06237085002914 25.087305018791366 10.06520220782282 6 19.527547896653992 39.26506165216524 30.95463609532913 10.252754355851641 7 38.92032431916546 55.543778315385495 4.653809390911023 0.8820879745380246 8 87.7768635554508 2.4209699786419026 8.588789384866551 1.213377081040748 9 84.40728749271554 3.6777284354796027 10.201998146169208 1.7129859256356457 10 61.539084450524264 18.025684666563517 13.634332599224052 6.800898283688168 11 57.84024374549015 15.125205880779301 18.63490378733871 8.39964658639184 12 51.78738498512742 18.683924741989266 20.330826371827555 9.197863901055758 13 20.169736863034874 50.02190759477746 20.12201734965823 9.686338192529439 14 11.891268919702519 51.233838629958306 25.76275303994991 11.112139410389261 15 9.995647401961707 20.484251837562777 59.24984924971911 10.270251510756411 16 11.488689752306804 13.54612380177025 57.83576100332446 17.129425442598485 17 12.450310249139243 13.646045570689228 30.23725274423353 43.666391435938 18 19.80186279627672 20.41816754176542 39.04989002821235 20.730079633745504 19 30.04623008614095 23.253285054682223 26.677087837163665 20.023397022013157 20 35.157712991709815 20.59183764953922 24.747050427957273 19.503398930793693 21 20.403996292338416 29.174119828036225 28.975866940644156 21.446016938981202 22 21.790465062809 24.013615967816804 26.286800059577086 27.909118909797105 23 17.00896982246895 31.97424303114349 24.995914920445784 26.020872225941773 24 19.320040315758575 21.724091557839664 44.656932849968406 14.298935276433355 25 13.738303296550747 22.247415554536897 43.18890709299954 20.82537405591281 26 13.678147788778974 37.8508288011846 29.35502016510952 19.11600324492691 27 15.174082230843869 35.683929080126845 31.486347158013768 17.655641531015515 28 12.0167857003417 27.540521820109003 45.315895948324105 15.126796531225192 29 11.648477819825578 22.983019083467212 44.76900140411053 20.59950169259668 30 15.702322783464757 30.709965135834317 35.250982949673265 18.336729131027663 31 31.82732477177781 25.642442024406364 24.56802995050185 17.962203253313977 32 32.65518602656965 26.486209783657078 26.434730551044694 14.42387363872858 33 29.06566638854385 26.64541943283189 26.85668673296305 17.432227445661212 34 17.76771008515764 27.37466035997866 30.178832491493633 24.678797063370066 35 17.447700136362123 25.402109202491246 33.99740579372734 23.152784867419285 36 32.423818688985904 22.765822995310472 27.413125179851956 17.39723313585167 37 19.15909541155188 32.846497893834204 30.603536160545797 17.390870534068117 38 19.24556895397381 34.24728251831778 23.75419534055103 22.752953187157377 39 18.562456889757804 33.57226831091722 27.69336886750026 20.17190593182472 40 24.371946131899627 25.977057036386853 23.976018775459444 25.674978056254076 41 15.43480429938355 23.558545335706775 27.640009775270013 33.366640589639665 42 22.521875058745614 25.54382169676129 22.85142891021646 29.08287433427664 43 23.216700094426795 26.365031140597594 23.976307984631426 26.441960780344186 44 19.346502954994715 31.657269778653763 28.578204329172095 20.41802293717943 45 15.10134612409098 40.869160324550535 21.15695237158751 22.872541179770973 46 21.99088701899092 34.4848678530991 25.37608037701308 18.14816475089691 47 21.063248599866096 27.789386312597518 26.75690956863006 24.390455518906325 48 23.753183108449104 21.653090706118654 31.762108103496395 22.83161808193585 49 20.115220934116703 21.27625115502913 34.33520210659961 24.273325804254554 50 17.56830036107765 34.709294170555324 26.543762408881033 21.17864305948599 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 463.0 1 618.0 2 773.0 3 4285.0 4 7797.0 5 6022.5 6 4248.0 7 4595.5 8 4943.0 9 5513.0 10 6083.0 11 6119.0 12 6155.0 13 5886.0 14 5617.0 15 5114.0 16 4611.0 17 4211.5 18 3812.0 19 3542.5 20 3273.0 21 3060.0 22 2847.0 23 2731.5 24 2616.0 25 3301.0 26 3986.0 27 4750.5 28 5515.0 29 6447.5 30 7380.0 31 8144.0 32 8908.0 33 10357.0 34 11806.0 35 13716.0 36 15626.0 37 20158.0 38 24690.0 39 36952.0 40 49214.0 41 64918.5 42 80623.0 43 83615.0 44 86607.0 45 80486.5 46 74366.0 47 68071.0 48 61776.0 49 57448.0 50 53120.0 51 47229.0 52 41338.0 53 35502.0 54 29666.0 55 26235.5 56 22805.0 57 20467.0 58 18129.0 59 16402.0 60 14675.0 61 12631.5 62 10588.0 63 8667.0 64 6746.0 65 5429.0 66 4112.0 67 3334.5 68 2557.0 69 2112.5 70 1668.0 71 1353.5 72 1039.0 73 868.0 74 697.0 75 539.5 76 382.0 77 239.0 78 96.0 79 93.0 80 90.0 81 78.5 82 67.0 83 44.5 84 22.0 85 12.5 86 3.0 87 4.0 88 5.0 89 2.5 90 0.0 91 0.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 691541.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.200545412274863 #Duplication Level Percentage of deduplicated Percentage of total 1 74.75787401225048 17.3442345094634 2 6.20243547562834 2.8779977183803993 3 2.740159458358072 1.9071958185153286 4 1.8286741169201721 1.6970494757543235 5 1.3124679260559482 1.5224985860307618 6 1.025513885798696 1.4275488887034666 7 0.8848393498110565 1.437012886250143 8 0.7150299866637629 1.3271268541384738 9 0.6208940205114979 1.2964571927178232 >10 8.424241986066098 43.97306062303038 >50 1.3811826829305947 20.84458357141294 >100 0.10413171938838434 3.2685964682151187 >500 0.0 0.0 >1k 0.002555379616892867 1.0766374073874132 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2577 0.3726460180958179 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2507 0.3625236970765291 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1130 0.1634031821685193 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1050 0.1518348152893321 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01547269070091289 0.0 2 0.0 0.0 0.0 0.05032239592446435 0.0 3 0.0 0.0 0.0 0.06579508662537724 0.0 4 0.0 0.0 0.0 0.08791958828182277 0.0 5 0.0 0.0 0.0 0.1370851475183684 0.0 6 0.0 0.0 0.0 0.2304997100678051 0.0 7 0.0 0.0 0.0 0.29166744994150745 0.0 8 0.0 0.0 0.0 0.5936018254882935 0.0 9 0.0 0.0 0.0 0.724324371223109 0.0 10 0.0 0.0 0.0 0.9302413016726413 0.0 11 0.0 0.0 0.0 1.1497510632052186 0.0 12 0.0 0.0 0.0 1.3443888359475433 0.0 13 0.0 0.0 0.0 1.430573169197488 0.0 14 0.0 0.0 0.0 1.4618077597712933 0.0 15 0.0 0.0 0.0 1.5090934593899712 0.0 16 0.0 0.0 0.0 1.624777128181843 0.0 17 0.0 0.0 0.0 1.76330832156011 0.0 18 0.0 0.0 0.0 1.9887468711182708 0.0 19 0.0 0.0 0.0 2.069725439272581 0.0 20 0.0 0.0 0.0 2.1499809844969424 0.0 21 0.0 0.0 0.0 2.263206375326987 0.0 22 0.0 0.0 0.0 2.371081396475408 0.0 23 0.0 0.0 0.0 2.514818354949309 0.0 24 0.0 0.0 0.0 2.6147401238682884 0.0 25 0.0 0.0 0.0 2.6890668810670664 0.0 26 0.0 0.0 0.0 2.7740943776290923 0.0 27 0.0 0.0 0.0 2.8497225761017786 0.0 28 0.0 0.0 0.0 2.92072342782279 0.0 29 0.0 0.0 0.0 3.010089061964511 0.0 30 0.0 0.0 0.0 3.12895403164816 0.0 31 0.0 0.0 0.0 3.238275098656479 0.0 32 0.0 0.0 0.0 3.332123474963885 0.0 33 0.0 0.0 0.0 3.42683947878723 0.0 34 0.0 0.0 0.0 3.531967012801844 0.0 35 0.0 0.0 0.0 3.690019825288739 0.0 36 0.0 0.0 0.0 3.8064265170105607 0.0 37 0.0 0.0 0.0 3.916326002362839 0.0 38 0.0 0.0 0.0 4.021164327205473 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGGAT 25 4.4409957E-5 44.0 18 GTGCAAC 20 7.854305E-4 44.0 39 TTAGGCG 40 8.303687E-9 44.0 5 AGCGTAA 60 0.0 44.0 1 AGGTACG 20 7.854305E-4 44.0 7 GGTACGT 20 7.854305E-4 44.0 8 CCGGGTA 20 7.854305E-4 44.0 29 CGAACGG 20 7.854305E-4 44.0 2 ACACGAT 25 4.4409957E-5 44.0 13 GGTGTAA 45 4.783942E-10 44.0 1 ATAGGCG 120 0.0 44.0 5 TCCGATG 20 7.854305E-4 44.0 1 CATGCCA 20 7.854305E-4 44.0 15 CGTGCAC 20 7.854305E-4 44.0 23 GCGCGAA 20 7.854305E-4 44.0 1 TTTCGAT 25 4.4409957E-5 44.0 39 CGGTTAG 30 2.5262489E-6 44.0 2 ATTACGA 25 4.4409957E-5 44.0 1 CCGGATA 30 2.5262489E-6 44.0 20 GCCGGAT 30 2.5262489E-6 44.0 19 >>END_MODULE