##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545734_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1188596 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.557756378113336 31.0 31.0 33.0 30.0 34.0 2 31.735238045559637 31.0 31.0 34.0 30.0 34.0 3 31.785898656902766 31.0 31.0 34.0 30.0 34.0 4 35.68112630363891 37.0 35.0 37.0 35.0 37.0 5 27.142533712043452 35.0 26.0 37.0 0.0 37.0 6 31.372315740588054 35.0 26.0 37.0 17.0 37.0 7 14.968582260078277 0.0 0.0 32.0 0.0 37.0 8 25.08960824367573 17.0 17.0 35.0 17.0 37.0 9 33.22484006340254 32.0 32.0 37.0 28.0 39.0 10 36.11124553675092 37.0 35.0 39.0 32.0 39.0 11 37.0808954430269 39.0 37.0 39.0 34.0 39.0 12 36.95056436333287 39.0 35.0 39.0 33.0 39.0 13 36.38306792215353 39.0 35.0 39.0 32.0 39.0 14 37.71569229578427 40.0 36.0 41.0 33.0 41.0 15 38.024111640961266 40.0 36.0 41.0 33.0 41.0 16 38.093155285732074 40.0 36.0 41.0 33.0 41.0 17 38.128880628910075 40.0 36.0 41.0 34.0 41.0 18 38.103618891532534 40.0 36.0 41.0 34.0 41.0 19 38.026049221097836 40.0 36.0 41.0 34.0 41.0 20 38.04507502969891 40.0 36.0 41.0 34.0 41.0 21 37.90104880043345 40.0 35.0 41.0 34.0 41.0 22 37.809414637101256 40.0 35.0 41.0 33.0 41.0 23 37.72416700039374 39.0 35.0 41.0 33.0 41.0 24 37.58735011728123 39.0 35.0 41.0 33.0 41.0 25 37.3994948662119 39.0 35.0 41.0 33.0 41.0 26 37.152549730943065 39.0 35.0 40.0 33.0 41.0 27 36.945575283780194 39.0 35.0 40.0 32.0 41.0 28 36.99773598430417 39.0 35.0 40.0 32.0 41.0 29 36.95915096466756 38.0 35.0 40.0 33.0 41.0 30 36.77291443013438 38.0 35.0 40.0 32.0 41.0 31 36.56162817307142 38.0 35.0 40.0 31.0 41.0 32 36.32034013239149 38.0 35.0 40.0 31.0 41.0 33 36.14051284035955 38.0 35.0 40.0 31.0 41.0 34 35.91394721166822 38.0 35.0 40.0 30.0 41.0 35 35.761309982534016 38.0 35.0 40.0 30.0 41.0 36 35.57929691838101 38.0 35.0 40.0 29.0 41.0 37 35.42798309938785 38.0 34.0 40.0 29.0 41.0 38 35.249136796691225 38.0 34.0 40.0 28.0 41.0 39 35.22533560604276 38.0 34.0 40.0 28.0 41.0 40 34.98292859811071 37.0 34.0 40.0 27.0 41.0 41 34.81642038169403 37.0 34.0 40.0 26.0 40.0 42 34.808764289969005 37.0 34.0 40.0 26.0 41.0 43 34.67401202763597 37.0 34.0 40.0 26.0 41.0 44 34.45432173757946 37.0 34.0 40.0 25.0 40.0 45 34.16576532312072 36.0 33.0 39.0 24.0 40.0 46 34.16566941164197 36.0 33.0 39.0 24.0 40.0 47 34.033782715068874 36.0 33.0 39.0 24.0 40.0 48 33.98998061578535 36.0 33.0 39.0 24.0 40.0 49 33.88509552446752 36.0 33.0 39.0 24.0 40.0 50 33.94511171163288 36.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 2.0 12 2.0 13 4.0 14 5.0 15 20.0 16 51.0 17 147.0 18 356.0 19 840.0 20 1551.0 21 2658.0 22 4199.0 23 6387.0 24 9964.0 25 14039.0 26 18220.0 27 20021.0 28 20971.0 29 23930.0 30 29248.0 31 39304.0 32 55673.0 33 106301.0 34 103100.0 35 125248.0 36 155217.0 37 289545.0 38 130687.0 39 30904.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.49775701752319 23.366980874914606 28.05292967501153 15.082332432550674 2 32.8066054403683 24.687278099539288 30.050580685110837 12.455535774981573 3 31.002544178173242 23.639318994847702 32.719864445110034 12.638272381869028 4 27.422101370019753 26.51413937115723 31.462582744683644 14.601176514139372 5 16.85349774019095 48.56057062281886 23.713355925814994 10.872575711175202 6 20.586557585588373 40.45882705309457 28.75451372880272 10.200101632514327 7 39.14509219280563 55.87743859141373 3.982177291527146 0.9952919242534889 8 87.80426654641275 2.9301798087827993 7.60157362131456 1.663980023489899 9 83.72062500630997 4.769324480311225 9.02569081504565 2.4843596983331597 10 53.651198556952906 21.098422003775884 13.866191708536796 11.384187730734412 11 48.52018684229124 18.97903072196104 19.077802718501495 13.42297971724623 12 42.37335478160788 19.98870936802749 23.665400186438454 13.972535663926177 13 22.150082955015833 38.740665457396794 24.50496215703233 14.604289430555042 14 16.101602226492435 41.85021655802308 27.33838915830105 14.709792057183432 15 14.538245122817173 21.502175676175924 48.308424393149565 15.651154807857337 16 15.824720931249978 16.158307784983293 48.45675065371245 19.560220630054282 17 16.56113599574624 16.504346304379283 30.023237500378595 36.91128019949588 18 21.22647224119886 22.622657320065017 34.91951849072351 21.231351948012612 19 29.547634351789842 22.98770986945943 26.16793258600904 21.296723192741688 20 31.11536636502226 22.227485201027093 24.696869247414597 21.96027918653605 21 22.988046400963828 26.94759194882029 28.57169298903917 21.492668661176715 22 22.629051418648558 23.224712181430863 25.869092610104694 28.277143789815884 23 20.03851603067821 30.019283255201934 25.214538834052952 24.727661880066904 24 20.929819720073095 23.540294599678948 37.96437140962951 17.565514270618444 25 18.892457992454965 22.960114286098893 36.78583808123197 21.361589640214167 26 17.07939451251729 32.27009008948373 28.02533409165099 22.625181306347994 27 18.696596656896038 30.92202901574631 29.79077836371652 20.590595963641135 28 15.677572530952485 27.48427556545706 39.46328273021279 17.374869173377665 29 16.56231385601163 24.7172294034306 37.30392833225083 21.41652840830694 30 19.27164486503404 27.9615613715678 32.652137479850175 20.114656283547987 31 30.59130267980037 24.694008729627225 24.74474085391504 19.969947736657367 32 29.719938482040998 25.369679857579868 27.73061662667551 17.17976503370363 33 28.19696515889335 24.981827298762575 25.70814641812693 21.113061124217143 34 19.824902658262353 26.549306913366692 28.94095218223854 24.68483824613241 35 20.567964219970452 23.48485103432958 32.23811959656604 23.709065149133938 36 30.9544201730445 23.555101985872405 26.16271634769089 19.327761493392202 37 21.014709792057186 31.057398813389913 27.73827271840053 20.189618676152367 38 21.942022352422523 32.545709391584694 22.889947467432165 22.62232078856062 39 21.781917489205753 29.443309585426842 25.497814227878944 23.276958697488464 40 24.246337695903403 24.37379900319368 25.697629808614536 25.682233492288383 41 18.749011438705836 23.165061972276536 27.222874719416858 30.86305186960077 42 22.317928042833728 27.090449572436725 22.586311917590166 28.00531046713938 43 22.787389491467245 25.880787079882484 24.58362639618508 26.748197032465193 44 20.870001245166566 29.676273519345514 27.59406896876651 21.85965626672141 45 19.07511046646632 35.33530316440574 23.365214084516523 22.224372284611423 46 22.88801241128188 30.668115995678935 26.822402229184682 19.621469363854498 47 22.97929658184951 27.10618242026727 26.3812935597966 23.533227438086616 48 23.6710370891371 24.109116974985614 29.560843213337417 22.65900272253987 49 21.52480741984661 23.472735900171294 31.926323157742413 23.076133522239683 50 20.506715486170236 30.362797788314953 26.96340892952694 22.167077795987872 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 627.0 1 1241.5 2 1856.0 3 7857.0 4 13858.0 5 10299.5 6 6741.0 7 6891.0 8 7041.0 9 7264.5 10 7488.0 11 7413.0 12 7338.0 13 7018.0 14 6698.0 15 6309.5 16 5921.0 17 5499.5 18 5078.0 19 4848.0 20 4618.0 21 4502.0 22 4386.0 23 4864.5 24 5343.0 25 6346.5 26 7350.0 27 8759.0 28 10168.0 29 11947.5 30 13727.0 31 15706.0 32 17685.0 33 19669.0 34 21653.0 35 23138.5 36 24624.0 37 31107.0 38 37590.0 39 53926.0 40 70262.0 41 88211.5 42 106161.0 43 110471.0 44 114781.0 45 112202.5 46 109624.0 47 103619.5 48 97615.0 49 94303.5 50 90992.0 51 84091.5 52 77191.0 53 69170.0 54 61149.0 55 57538.5 56 53928.0 57 51272.0 58 48616.0 59 45596.5 60 42577.0 61 37928.0 62 33279.0 63 27950.5 64 22622.0 65 19053.5 66 15485.0 67 13798.0 68 12111.0 69 10756.5 70 9402.0 71 7947.5 72 6493.0 73 5085.5 74 3678.0 75 2611.0 76 1544.0 77 1117.5 78 691.0 79 500.0 80 309.0 81 227.5 82 146.0 83 110.0 84 74.0 85 52.0 86 30.0 87 23.5 88 17.0 89 20.0 90 23.0 91 13.5 92 4.0 93 3.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1188596.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.243753820611023 #Duplication Level Percentage of deduplicated Percentage of total 1 73.45249172963102 14.869541600851177 2 6.002921274672665 2.430433209779639 3 2.6892978803148324 1.6332445271815352 4 1.7154409980678873 1.3890786103467834 5 1.296460373648997 1.312261232116384 6 1.090004781413011 1.3239473074928354 7 0.9111469950831468 1.2911524823996898 8 0.7858232594542383 1.2726410088721396 9 0.7131005611972205 1.299224898919449 >10 9.515202940736973 43.90014088138506 >50 1.6242391841917156 22.06108902222339 >100 0.1989412957916846 5.912176293703409 >500 0.003136461870589622 0.36962440007427727 >1k 0.0017922639260512126 0.9354445246542383 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4273 0.35949977957186463 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2455 0.20654621082352626 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1853 0.15589821941181026 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1732 0.1457181414038075 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.006646497211836486 0.0 2 0.0 0.0 0.0 0.021958680661890162 0.0 3 0.0 0.0 0.0 0.029867171015214588 0.0 4 0.0 0.0 0.0 0.04795573937654173 0.0 5 0.0 0.0 0.0 0.07790704326785552 0.0 6 0.0 0.0 0.0 0.14546574277550994 0.0 7 0.0 0.0 0.0 0.19527240542623397 0.0 8 0.0 0.0 0.0 0.5127898798245998 0.0 9 0.0 0.0 0.0 0.664397322555351 0.0 10 0.0 0.0 0.0 0.9030822920487701 0.0 11 0.0 0.0 0.0 1.0604949032303659 0.0 12 0.0 0.0 0.0 1.236500880029884 0.0 13 0.0 0.0 0.0 1.2990116069715867 0.0 14 0.0 0.0 0.0 1.3196241616158897 0.0 15 0.0 0.0 0.0 1.3475562764808227 0.0 16 0.0 0.0 0.0 1.4187326896607426 0.0 17 0.0 0.0 0.0 1.5048847547863193 0.0 18 0.0 0.0 0.0 1.6668405412772718 0.0 19 0.0 0.0 0.0 1.7239667641486258 0.0 20 0.0 0.0 0.0 1.7948066458241487 0.0 21 0.0 0.0 0.0 1.8689277096675405 0.0 22 0.0 0.0 0.0 1.9406089201040555 0.0 23 0.0 0.0 0.0 2.027181649610128 0.0 24 0.0 0.0 0.0 2.09499274774608 0.0 25 0.0 0.0 0.0 2.1481647254407723 0.0 26 0.0 0.0 0.0 2.20697360583411 0.0 27 0.0 0.0 0.0 2.2646046259620594 0.0 28 0.0 0.0 0.0 2.320552988568025 0.0 29 0.0 0.0 0.0 2.3817175894921405 0.0 30 0.0 0.0 0.0 2.4624851505473684 0.0 31 0.0 0.0 0.0 2.540728725319621 0.0 32 0.0 0.0 0.0 2.613756061773723 0.0 33 0.0 0.0 0.0 2.6865309995995275 0.0 34 0.0 0.0 0.0 2.763176049725895 0.0 35 0.0 0.0 0.0 2.873979047548536 0.0 36 0.0 0.0 0.0 2.9570181962584425 0.0 37 0.0 0.0 0.0 3.0411510723576387 0.0 38 0.0 0.0 0.0 3.1258728785895293 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGATCG 20 7.856591E-4 44.0 20 ACACGTC 20 7.856591E-4 44.0 40 CTCGTTA 20 7.856591E-4 44.0 1 CGTATCA 20 7.856591E-4 44.0 33 CGTATAT 25 4.4429315E-5 44.0 14 CAACGGC 25 4.4429315E-5 44.0 42 CGCATCG 30 2.5277895E-6 44.0 21 GTGATCG 25 4.4429315E-5 44.0 19 GTCTAAC 30 2.5277895E-6 44.0 33 CGATTCG 35 1.446133E-7 44.0 10 TACGCAA 20 7.856591E-4 44.0 1 TCTACCG 20 7.856591E-4 44.0 18 TACGACG 20 7.856591E-4 44.0 1 CTCGACA 30 2.5277895E-6 44.0 1 ACGTAGA 25 4.4429315E-5 44.0 1 CGCAAAC 25 4.4429315E-5 44.0 29 TATACGA 20 7.856591E-4 44.0 1 TAAGACG 25 4.4429315E-5 44.0 1 ACCCATC 20 7.856591E-4 44.0 24 ACGACTC 20 7.856591E-4 44.0 16 >>END_MODULE