##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545730_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 894066 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.584689497195956 31.0 31.0 33.0 30.0 34.0 2 31.76518176510459 31.0 31.0 34.0 30.0 34.0 3 31.80462180644382 31.0 31.0 34.0 30.0 34.0 4 35.6750519536589 37.0 35.0 37.0 35.0 37.0 5 27.209780933398655 35.0 26.0 37.0 0.0 37.0 6 31.39151024644713 35.0 28.0 37.0 17.0 37.0 7 14.87688716492966 0.0 0.0 32.0 0.0 37.0 8 25.065904530538013 17.0 17.0 35.0 17.0 37.0 9 33.32155679782029 32.0 32.0 37.0 28.0 39.0 10 36.21840893177909 37.0 35.0 39.0 33.0 39.0 11 37.14873957850986 39.0 37.0 39.0 34.0 39.0 12 36.77370686280431 39.0 35.0 39.0 33.0 39.0 13 36.02109352105997 38.0 35.0 39.0 32.0 39.0 14 37.2770567273557 39.0 35.0 41.0 33.0 41.0 15 37.688809327275614 40.0 35.0 41.0 33.0 41.0 16 37.83723461131505 40.0 35.0 41.0 33.0 41.0 17 37.900462605668935 40.0 35.0 41.0 34.0 41.0 18 37.891950929797126 40.0 36.0 41.0 34.0 41.0 19 37.809139370024134 40.0 36.0 41.0 34.0 41.0 20 37.79887950106592 39.0 35.0 41.0 34.0 41.0 21 37.61511230714511 39.0 35.0 41.0 33.0 41.0 22 37.53673889847058 39.0 35.0 41.0 33.0 41.0 23 37.44379385861894 39.0 35.0 41.0 33.0 41.0 24 37.30900403325929 39.0 35.0 41.0 33.0 41.0 25 37.134735019562314 38.0 35.0 41.0 33.0 41.0 26 36.90648117700483 38.0 35.0 40.0 33.0 41.0 27 36.661301290956146 38.0 35.0 40.0 32.0 41.0 28 36.75988573550499 38.0 35.0 40.0 32.0 41.0 29 36.806375591958535 38.0 35.0 40.0 33.0 41.0 30 36.576605082846235 38.0 35.0 40.0 32.0 41.0 31 36.329498046005554 38.0 35.0 40.0 31.0 41.0 32 36.010612191941085 38.0 35.0 40.0 31.0 41.0 33 35.81488055691638 38.0 35.0 40.0 30.0 41.0 34 35.646715119465455 38.0 35.0 40.0 30.0 41.0 35 35.548796173884256 38.0 35.0 40.0 30.0 41.0 36 35.321139602669156 38.0 34.0 40.0 29.0 41.0 37 35.071019365460714 37.0 34.0 40.0 27.0 41.0 38 34.943501933861704 37.0 34.0 40.0 27.0 41.0 39 34.959651748304935 37.0 34.0 40.0 27.0 41.0 40 34.71940102855941 37.0 34.0 40.0 27.0 40.0 41 34.59844015989871 37.0 34.0 40.0 26.0 40.0 42 34.615199549026585 37.0 34.0 40.0 26.0 40.0 43 34.50445716535468 36.0 33.0 40.0 26.0 41.0 44 34.296721942227975 36.0 34.0 40.0 24.0 40.0 45 34.00467191460138 36.0 33.0 39.0 24.0 40.0 46 34.029001214675425 36.0 33.0 39.0 24.0 40.0 47 33.932172792612626 36.0 33.0 39.0 24.0 40.0 48 33.960382119440844 36.0 33.0 39.0 24.0 40.0 49 33.849531242659936 36.0 33.0 39.0 24.0 40.0 50 33.85649381589278 35.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 2.0 12 3.0 13 2.0 14 9.0 15 14.0 16 50.0 17 116.0 18 342.0 19 668.0 20 1324.0 21 2123.0 22 3531.0 23 5338.0 24 8072.0 25 11732.0 26 14803.0 27 15772.0 28 16323.0 29 18268.0 30 22258.0 31 30607.0 32 44765.0 33 94090.0 34 83168.0 35 93621.0 36 102665.0 37 205968.0 38 98674.0 39 19757.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.095093650804305 24.08211474320688 30.210297673773525 15.612493932215296 2 31.86263653913693 24.39316560522378 31.61791187675183 12.126285978887465 3 29.20466721696161 23.279153887968 34.27297313621142 13.243205758858966 4 25.71700523227592 27.598745506483862 32.23240789829834 14.451841362941886 5 17.439540257654357 48.30728380231437 24.179646692749753 10.07352924728152 6 19.635463153726906 40.11594222350475 29.518849838826217 10.729744783942124 7 38.97195509056378 56.255690295794714 3.8436759702303855 0.928678643411113 8 88.98504137278455 2.5265472571376164 7.160880740348027 1.3275306297297962 9 85.77152022333921 3.6858576436191512 8.727208058465482 1.8154140745761498 10 62.37335946115835 17.563244771638782 12.233884299369398 7.829511467833471 11 59.11230267116745 15.080430303803075 17.66435587529332 8.14291114973615 12 52.42957455042468 20.160368473915796 18.69358637952903 8.716470596130486 13 19.710625390071872 51.19577301899413 19.175653698943925 9.917947891990076 14 11.527560605145482 51.33905103202672 25.75145459060069 11.381933772227107 15 9.3127353014207 20.810096793749008 58.802705840508416 11.074462064321873 16 10.908366943827414 13.782092149796549 56.55824066679641 18.75130023957963 17 11.801477743253853 14.60943599242114 29.752389644612364 43.83669661971264 18 20.091246060134264 21.1799800014764 37.727192399666244 21.00158153872309 19 29.94197296396463 22.94550961562122 25.76140911297376 21.351108307440388 20 34.16022978169397 20.692543950894006 24.829263164016975 20.31796310339505 21 20.123905841403207 29.374565188699712 28.40506181870242 22.096467151194656 22 22.30238036118139 24.325944617064067 24.252012714944982 29.119662306809563 23 17.247608118416313 32.549834128576634 23.933691696138766 26.268866056868283 24 17.839398881066945 21.48420810096794 46.18383877700304 14.492554240962077 25 14.004558947549734 24.26196723731805 41.262166327765506 20.471307487366705 26 13.822133936420803 38.04707929839631 28.224426384629325 19.90636038055356 27 15.26956622889138 37.5427541143495 29.2774806334208 17.910199023338322 28 11.61010484684576 28.811295810376414 44.16922240639953 15.4093769363783 29 11.90806942664188 23.115183890227343 42.43534593642975 22.541400746701026 30 16.52886923336756 32.10959817284183 33.70131511543891 17.66021747835171 31 31.861853599175006 26.353647269888352 23.780571009299088 18.003928121637554 32 33.511060704690706 25.38884153966262 25.76465272138746 15.335445034259216 33 29.068659360718335 28.082378705822613 24.328293436949842 18.520668496509206 34 17.730682074925117 26.64512463285708 29.4773540208441 26.1468392713737 35 18.9921102021551 24.828703921187024 32.95562072598667 23.223565150671202 36 34.09826567613577 23.250073260810723 25.39398657369814 17.25767448935537 37 19.56969619692506 34.15083450215084 29.129057586352687 17.150411714571405 38 19.532674321582526 34.48872902000523 24.089944142826145 21.8886525155861 39 19.81363791934824 33.40178465571893 26.716372169392415 20.06820525554042 40 24.42358841517293 25.35976091250534 24.01165014663347 26.20500052568826 41 14.957620578346564 23.11160473611568 28.28281133607586 33.6479633494619 42 21.710589598530756 24.84212574910577 22.841266752118973 30.606017900244503 43 22.703133773121895 26.639308507425625 24.152355642648303 26.505202076804174 44 19.5403918726358 32.378929519744624 27.010869443642864 21.069809163976707 45 15.598624710032594 41.6385367523203 19.980515979804622 22.782322557842484 46 21.311513915080095 35.2437068404346 25.596656175271175 17.848123069214132 47 21.366655258112935 27.304807475063363 27.229757087284383 24.098780179539318 48 23.07245773801934 21.99379016761626 32.43496565130538 22.498786443059014 49 20.84834900331743 22.437605277462737 33.65243729210148 23.061608427118355 50 17.890178130026193 35.52489413533229 25.629875199370066 20.955052535271445 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 769.0 1 954.0 2 1139.0 3 4606.0 4 8073.0 5 6207.0 6 4341.0 7 4733.5 8 5126.0 9 5624.5 10 6123.0 11 6251.0 12 6379.0 13 6093.0 14 5807.0 15 5374.0 16 4941.0 17 4652.0 18 4363.0 19 3842.5 20 3322.0 21 3076.0 22 2830.0 23 3116.5 24 3403.0 25 3879.0 26 4355.0 27 5112.0 28 5869.0 29 8208.5 30 10548.0 31 12398.0 32 14248.0 33 15763.0 34 17278.0 35 19346.5 36 21415.0 37 27898.0 38 34381.0 39 51919.0 40 69457.0 41 87365.0 42 105273.0 43 106778.0 44 108283.0 45 101294.0 46 94305.0 47 87265.5 48 80226.0 49 74367.0 50 68508.0 51 61512.5 52 54517.0 53 46866.0 54 39215.0 55 33670.5 56 28126.0 57 25361.0 58 22596.0 59 20711.0 60 18826.0 61 16681.5 62 14537.0 63 12099.5 64 9662.0 65 7453.5 66 5245.0 67 4579.0 68 3913.0 69 3321.5 70 2730.0 71 2166.5 72 1603.0 73 1356.0 74 1109.0 75 876.5 76 644.0 77 432.5 78 221.0 79 201.5 80 182.0 81 139.5 82 97.0 83 65.5 84 34.0 85 24.0 86 14.0 87 11.0 88 8.0 89 13.5 90 19.0 91 11.5 92 4.0 93 2.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 894066.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.247121824559116 #Duplication Level Percentage of deduplicated Percentage of total 1 75.74454251445263 14.578644373211668 2 5.995413967650986 2.307889260480837 3 2.3928856236853955 1.381684833339268 4 1.4076988350199324 1.0837660387967434 5 0.9957397596068032 0.9582562229354673 6 0.823755323738833 0.9512951441778269 7 0.7205582464085796 0.9708070645221633 8 0.5958400455722835 0.9174564756064478 9 0.5778255487521208 1.0009330857157315 >10 8.318291346010781 38.246063027747965 >50 2.0872359025051446 28.102688141359778 >100 0.3372285630298561 8.536679185475272 >500 5.96864713327179E-4 0.0670894986451024 >1k 0.002387458853308716 0.896747647985735 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2793 0.3123930448087725 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2720 0.3042280994915364 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1154 0.1290732451519239 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1139 0.12739551666208088 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.011408553730932615 0.0 2 0.0 0.0 0.0 0.03758111817248391 0.0 3 0.0 0.0 0.0 0.05044370326128049 0.0 4 0.0 0.0 0.0 0.07001720230944919 0.0 5 0.0 0.0 0.0 0.10994714036771334 0.0 6 0.0 0.0 0.0 0.19137289640809516 0.0 7 0.0 0.0 0.0 0.2464023908749466 0.0 8 0.0 0.0 0.0 0.596376553856203 0.0 9 0.0 0.0 0.0 0.75117496918572 0.0 10 0.0 0.0 0.0 0.9989195428525411 0.0 11 0.0 0.0 0.0 1.2040498128773491 0.0 12 0.0 0.0 0.0 1.3918435551737791 0.0 13 0.0 0.0 0.0 1.465551760160883 0.0 14 0.0 0.0 0.0 1.4948560844501413 0.0 15 0.0 0.0 0.0 1.5414969364677775 0.0 16 0.0 0.0 0.0 1.6442857686121606 0.0 17 0.0 0.0 0.0 1.765082219880859 0.0 18 0.0 0.0 0.0 1.9715546726975413 0.0 19 0.0 0.0 0.0 2.037880872329336 0.0 20 0.0 0.0 0.0 2.114944534296126 0.0 21 0.0 0.0 0.0 2.211917241009053 0.0 22 0.0 0.0 0.0 2.2999420624428173 0.0 23 0.0 0.0 0.0 2.415593479675997 0.0 24 0.0 0.0 0.0 2.4967955385844 0.0 25 0.0 0.0 0.0 2.553614610107084 0.0 26 0.0 0.0 0.0 2.6170327470231505 0.0 27 0.0 0.0 0.0 2.6783257611854157 0.0 28 0.0 0.0 0.0 2.7379410468578382 0.0 29 0.0 0.0 0.0 2.808070097733277 0.0 30 0.0 0.0 0.0 2.913766992593388 0.0 31 0.0 0.0 0.0 3.008390879420535 0.0 32 0.0 0.0 0.0 3.075723716146235 0.0 33 0.0 0.0 0.0 3.1430565528719354 0.0 34 0.0 0.0 0.0 3.2266074316661184 0.0 35 0.0 0.0 0.0 3.354785888290126 0.0 36 0.0 0.0 0.0 3.4449358324776918 0.0 37 0.0 0.0 0.0 3.5307236825916655 0.0 38 0.0 0.0 0.0 3.6119257415000683 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGTCAT 20 7.8555424E-4 44.0 7 TCGCCTG 20 7.8555424E-4 44.0 17 TCTGCGA 20 7.8555424E-4 44.0 1 AACCGTA 25 4.442045E-5 44.0 16 CGGGTAT 75 0.0 44.0 6 AGCGTAA 40 8.309144E-9 44.0 1 CTCACGT 20 7.8555424E-4 44.0 44 CTCACGA 150 0.0 44.0 24 CTCGTTA 25 4.442045E-5 44.0 1 ACGCCCG 25 4.442045E-5 44.0 10 GGTGTCG 25 4.442045E-5 44.0 8 CGAGTGA 20 7.8555424E-4 44.0 41 GGTCGCT 25 4.442045E-5 44.0 8 CCTAGTC 25 4.442045E-5 44.0 26 CGAAACA 20 7.8555424E-4 44.0 38 ACCGCTC 30 2.5270838E-6 44.0 18 GTTTACG 25 4.442045E-5 44.0 1 CGTTGTA 30 2.5270838E-6 44.0 1 TAGCGTG 20 7.8555424E-4 44.0 10 ATTACTA 40 8.309144E-9 44.0 1 >>END_MODULE