SRR1545729_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545729_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	347182
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1064	0.30646750119533844	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	729	0.20997632365733243	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	618	0.1780046200551872	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	55	1.8189894E-12	45.000004	25
TTAGGCA	35	1.2086457E-7	45.000004	5
TTAGGAC	45	3.8380676E-10	45.000004	5
TTTACGG	35	1.2086457E-7	45.000004	2
TAGACGG	35	1.2086457E-7	45.000004	2
TAACGGG	35	1.2086457E-7	45.000004	3
GACGGTC	55	1.8189894E-12	45.000004	29
ACTAACC	55	1.8189894E-12	45.000004	14
CGGTCTA	55	1.8189894E-12	45.000004	31
TGAATTC	45	3.8380676E-10	45.000004	15
GGTCTAA	55	1.8189894E-12	45.000004	32
AGTACGG	35	1.2086457E-7	45.000004	2
ACGACGG	55	1.8189894E-12	45.000004	27
ATTTACG	25	3.885162E-5	45.0	1
CTTCGCA	20	7.026477E-4	45.0	28
TAGAGAT	25	3.885162E-5	45.0	4
TTGGCCG	25	3.885162E-5	45.0	36
ACTGCAA	25	3.885162E-5	45.0	1
GGTGTTA	25	3.885162E-5	45.0	1
GCGACCG	20	7.026477E-4	45.0	32