SRR1545727_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545727_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	443174
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1305	0.2944667331567285	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1234	0.27844593771295245	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	702	0.1584027943877574	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTACGG	50	2.1827873E-11	45.000004	2
AATAGGC	50	2.1827873E-11	45.000004	4
ATCGAAG	25	3.8869126E-5	45.000004	2
TCGCAAC	40	6.7993824E-9	45.0	16
AATCTCG	20	7.0285896E-4	45.0	18
CTCGAGC	20	7.0285896E-4	45.0	36
CGACGCT	30	2.1624728E-6	44.999996	12
CGTACAT	30	2.1624728E-6	44.999996	35
CGTAAAG	30	2.1624728E-6	44.999996	2
CGTTTTA	730	0.0	43.150684	1
AGGATGC	85	0.0	42.35294	7
AGGCGAT	375	0.0	41.999996	7
CGTTTTT	1045	0.0	41.339714	1
CGACGGT	100	0.0	40.500004	28
CGGTCTA	100	0.0	40.500004	31
ATAACGC	50	1.0786607E-9	40.500004	11
GGTCTAA	100	0.0	40.500004	32
CGACGTC	45	1.9237632E-8	40.0	18
TAACGGG	45	1.9237632E-8	40.0	3
CGTCAGA	45	1.9237632E-8	40.0	31