FastQCFastQC Report
Thu 26 May 2016
SRR1545727_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1545727_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences443174
Sequences flagged as poor quality0
Sequence length51
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13050.2944667331567285No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12340.27844593771295245No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC7020.1584027943877574No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTACGG502.1827873E-1145.0000042
AATAGGC502.1827873E-1145.0000044
ATCGAAG253.8869126E-545.0000042
TCGCAAC406.7993824E-945.016
AATCTCG207.0285896E-445.018
CTCGAGC207.0285896E-445.036
CGACGCT302.1624728E-644.99999612
CGTACAT302.1624728E-644.99999635
CGTAAAG302.1624728E-644.9999962
CGTTTTA7300.043.1506841
AGGATGC850.042.352947
AGGCGAT3750.041.9999967
CGTTTTT10450.041.3397141
CGACGGT1000.040.50000428
CGGTCTA1000.040.50000431
ATAACGC501.0786607E-940.50000411
GGTCTAA1000.040.50000432
CGACGTC451.9237632E-840.018
TAACGGG451.9237632E-840.03
CGTCAGA451.9237632E-840.031