FastQCFastQC Report
Thu 26 May 2016
SRR1545725_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1545725_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences404185
Sequences flagged as poor quality0
Sequence length51
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC12700.3142125511832453No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11930.2951618689461509No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10100.24988557220084864No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACGGT650.045.00000428
CGGTCTA600.045.00000431
ATGCCTC302.1619962E-645.00000443
TTCGCGA302.1619962E-645.0000041
CCGCAGG302.1619962E-645.0000043
TCGCCAG207.027852E-445.025
TTTAGCG207.027852E-445.01
AGCGTAA253.8863018E-545.01
AGTCCAC207.027852E-445.016
TCCGCGT207.027852E-445.029
TCACCGA207.027852E-445.01
CGTATGG253.8863018E-545.02
CGAGTGT207.027852E-445.016
TTAGCCT253.8863018E-545.028
CGTGCAG253.8863018E-545.02
CGCATCG207.027852E-445.021
CGACAAG253.8863018E-545.02
CTGCGAA351.2093187E-745.01
TCGTGAA207.027852E-445.01
CGTAGTC207.027852E-445.013