SRR1545723_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545723_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	550681
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1697	0.3081638916178332	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1630	0.29599713808902073	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	579	0.10514254168929016	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	20	7.0300803E-4	45.000004	6
AGCGTAA	20	7.0300803E-4	45.000004	1
AAATCGT	20	7.0300803E-4	45.000004	12
TAACGCC	40	6.8030204E-9	45.000004	12
ATATACG	20	7.0300803E-4	45.000004	1
TTACGAG	20	7.0300803E-4	45.000004	1
ACGTATA	20	7.0300803E-4	45.000004	13
TAGCGAA	30	2.163435E-6	44.999996	1
CGTTAAG	60	0.0	44.999996	2
GAACGTT	30	2.163435E-6	44.999996	39
CGTTTTA	825	0.0	43.909092	1
CGGTCTA	135	0.0	43.333332	31
GGTATGC	70	0.0	41.785717	8
CGTTTTT	1215	0.0	41.296295	1
CGCAGTA	120	0.0	41.249996	37
AGGTACC	240	0.0	40.312496	7
ACGACGG	140	0.0	40.178574	27
ATAACGC	45	1.9252184E-8	40.000004	11
GGTTAAC	45	1.9252184E-8	40.000004	8
CAAGGAC	445	0.0	39.94382	5