##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545722_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 779060 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.52540240803019 31.0 31.0 33.0 30.0 34.0 2 31.708632197776808 31.0 31.0 34.0 30.0 34.0 3 31.73991605267887 31.0 31.0 34.0 30.0 34.0 4 35.63589068877879 37.0 35.0 37.0 33.0 37.0 5 27.099282468616025 35.0 25.0 37.0 0.0 37.0 6 31.324722100993505 35.0 26.0 37.0 17.0 37.0 7 15.003552999768953 0.0 0.0 32.0 0.0 37.0 8 25.10022334608374 17.0 17.0 35.0 17.0 37.0 9 33.20318717428696 32.0 32.0 37.0 28.0 39.0 10 36.09932611095423 37.0 35.0 39.0 32.0 39.0 11 37.074959566657256 39.0 37.0 39.0 34.0 39.0 12 36.85636793058301 39.0 35.0 39.0 33.0 39.0 13 36.22504685133366 39.0 35.0 39.0 32.0 39.0 14 37.524252304058734 40.0 35.0 41.0 33.0 41.0 15 37.85870921366775 40.0 35.0 41.0 33.0 41.0 16 37.97403665956409 40.0 35.0 41.0 33.0 41.0 17 38.01747490565553 40.0 35.0 41.0 34.0 41.0 18 37.98334017919031 40.0 36.0 41.0 34.0 41.0 19 37.921891767001256 40.0 36.0 41.0 34.0 41.0 20 37.90529612610069 40.0 35.0 41.0 34.0 41.0 21 37.74106487305214 40.0 35.0 41.0 33.0 41.0 22 37.64668318229661 39.0 35.0 41.0 33.0 41.0 23 37.54409031396811 39.0 35.0 41.0 33.0 41.0 24 37.383355582368495 39.0 35.0 41.0 33.0 41.0 25 37.195353374579625 39.0 35.0 41.0 33.0 41.0 26 36.93644391959541 38.0 35.0 40.0 33.0 41.0 27 36.6890226683439 38.0 35.0 40.0 32.0 41.0 28 36.745583138654276 38.0 35.0 40.0 32.0 41.0 29 36.73380484173234 38.0 35.0 40.0 32.0 41.0 30 36.5521397581701 38.0 35.0 40.0 32.0 41.0 31 36.307371704361664 38.0 35.0 40.0 31.0 41.0 32 36.00126434420969 38.0 35.0 40.0 30.0 41.0 33 35.77290067517264 38.0 35.0 40.0 30.0 41.0 34 35.53095525376736 38.0 35.0 40.0 29.0 41.0 35 35.38289733781737 38.0 34.0 40.0 29.0 41.0 36 35.17888352630093 38.0 34.0 40.0 27.0 41.0 37 34.975257361435574 38.0 34.0 40.0 26.0 41.0 38 34.82827381716427 37.0 34.0 40.0 26.0 41.0 39 34.78300644366288 37.0 34.0 40.0 26.0 41.0 40 34.565512284034604 37.0 34.0 40.0 24.0 40.0 41 34.41093625651426 37.0 34.0 40.0 24.0 40.0 42 34.39884091084127 37.0 34.0 40.0 24.0 40.0 43 34.28569173106051 37.0 33.0 40.0 23.0 41.0 44 34.079619028059454 36.0 33.0 40.0 23.0 40.0 45 33.81569583857469 36.0 33.0 39.0 23.0 40.0 46 33.81585757194568 36.0 33.0 39.0 23.0 40.0 47 33.683430031063075 36.0 33.0 39.0 23.0 40.0 48 33.63694195569019 36.0 33.0 39.0 23.0 40.0 49 33.550012835981825 36.0 33.0 39.0 23.0 40.0 50 33.57750622545119 35.0 33.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 0.0 13 1.0 14 6.0 15 17.0 16 54.0 17 128.0 18 304.0 19 647.0 20 1247.0 21 2052.0 22 3271.0 23 5044.0 24 7678.0 25 11185.0 26 13884.0 27 14992.0 28 14898.0 29 16715.0 30 20148.0 31 26701.0 32 37556.0 33 73006.0 34 69930.0 35 81865.0 36 96875.0 37 181242.0 38 81707.0 39 17903.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.348214514928245 23.079993838728726 27.946499627756527 16.625292018586503 2 33.205273021333404 23.650809950453112 30.649243960670553 12.494673067542935 3 29.788206299899876 23.061638384720048 34.14165789541242 13.008497419967654 4 26.133545554899495 26.438400123225424 32.658203475983875 14.769850845891202 5 17.081739532256822 48.29936076810515 23.914589376941443 10.704310322696584 6 19.73031602187251 39.744949041152154 29.934408132878083 10.590326804097245 7 38.43311169871384 55.85667342695043 4.619926578183965 1.0902882961517726 8 86.01263060611505 3.1340333222088157 9.031910250815086 1.8214258208610377 9 81.83015428850152 4.699124586039586 10.676712961774445 2.79400816368444 10 55.0453110158396 20.107693887505455 14.59451133417195 10.252483762482992 11 51.19990758093087 17.558339537391216 19.280286499114318 11.961466382563604 12 43.76607706723487 20.364670243626932 23.530151721305163 12.33910096783303 13 21.305419351526197 41.95954098528997 24.364490539881395 12.370549123302442 14 14.473468025569275 44.726721946961725 28.44068492799014 12.359125099478858 15 12.633815110517805 21.49680384052576 53.29846224937745 12.570918799578982 16 14.223166379996405 15.026057043103227 51.58023772238338 19.170538854516984 17 15.256719636484995 15.441172695299462 30.689548943598695 38.61255872461685 18 20.816368444022284 21.072317921597822 37.50789412882191 20.60341950555798 19 29.915410879778193 21.78253279593356 27.312658845275074 20.98939747901317 20 32.14707467974225 21.755577234102635 25.634996020845634 20.462352065309474 21 21.836957358868382 26.449053988139553 30.068030703668526 21.645957949323545 22 22.77347059276564 22.798885836777654 26.57497496983544 27.85266860062126 23 19.444073627191745 29.6133802274536 25.59571791646343 25.346828228891226 24 19.80630503427207 22.6869560752702 40.719970220522164 16.786768669935565 25 17.315354401458166 22.245783379970735 39.63597155546428 20.802890663106822 26 16.71411701281031 33.38420660796345 28.68071778810361 21.220958591122635 27 17.284162965625242 32.71018920237209 31.356121479731986 18.649526352270684 28 14.392344620440017 27.482350524991656 41.789977665391625 16.3353271891767 29 15.19125612918132 23.4816317100095 40.36390008471748 20.9632120760917 30 18.59266295278926 28.20938053551716 33.78622955869894 19.411726952994634 31 30.14235103843093 24.605550278540804 25.76784843272662 19.484250250301645 32 30.426796395656304 25.512797473878777 27.63933458270223 16.42107154776269 33 27.82057864606064 26.23058557749082 25.929453443893923 20.019382332554617 34 19.600415885811106 27.2943033912664 28.91651477421508 24.188765948707417 35 20.335404205067643 24.733268297692092 31.704618386260364 23.226709110979897 36 32.32780530382769 23.00182270941904 25.863348137499038 18.80702384925423 37 20.40099607218956 32.173388442481965 29.031781890996843 18.39383359433163 38 21.521063846173593 33.009139219058866 23.164968038405256 22.304828896362284 39 20.967191230457217 30.531152927887454 27.340898005288423 21.1607578363669 40 23.381125972325624 24.985366980720354 26.49205452725079 25.141452519703233 41 17.794778322593896 23.7776294508767 27.30559905527174 31.121993171257667 42 22.55808281775473 25.679793597412264 24.319179524041797 27.44294406079121 43 23.011578055605472 25.627037712114596 25.764896156907042 25.596488075372886 44 19.77139116371011 29.96701152671168 28.741175262495826 21.520422047082384 45 17.01486406695248 37.50430005391112 23.420018997253102 22.060816881883294 46 22.849331245346956 31.54108797781942 27.162477857931357 18.447102918902267 47 23.088208867096245 27.05837804533669 26.59037814802454 23.263034939542525 48 23.782635483788155 22.901830411008138 30.857186866223397 22.45834723898031 49 21.395656303750673 22.75344646111981 33.18152645495854 22.669370780170976 50 20.059815675301003 32.27813005416784 26.706928862988732 20.955125407542425 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 498.0 1 743.5 2 989.0 3 5225.0 4 9461.0 5 7108.0 6 4755.0 7 5053.5 8 5352.0 9 5771.0 10 6190.0 11 6235.5 12 6281.0 13 5904.0 14 5527.0 15 5134.5 16 4742.0 17 4328.5 18 3915.0 19 3734.5 20 3554.0 21 3648.5 22 3743.0 23 3795.0 24 3847.0 25 4071.0 26 4295.0 27 5251.0 28 6207.0 29 7200.0 30 8193.0 31 9734.0 32 11275.0 33 12435.0 34 13595.0 35 14424.5 36 15254.0 37 20407.0 38 25560.0 39 38126.5 40 50693.0 41 64515.0 42 78337.0 43 81200.0 44 84063.0 45 81423.0 46 78783.0 47 72975.0 48 67167.0 49 62461.5 50 57756.0 51 53422.0 52 49088.0 53 43543.0 54 37998.0 55 33615.0 56 29232.0 57 27622.5 58 26013.0 59 24473.0 60 22933.0 61 20246.5 62 17560.0 63 14894.0 64 12228.0 65 10264.5 66 8301.0 67 7061.0 68 5821.0 69 5025.5 70 4230.0 71 3422.0 72 2614.0 73 2055.0 74 1496.0 75 1150.0 76 804.0 77 590.5 78 377.0 79 273.5 80 170.0 81 132.0 82 94.0 83 70.5 84 47.0 85 28.5 86 10.0 87 5.5 88 1.0 89 1.0 90 1.0 91 1.5 92 2.0 93 2.5 94 3.0 95 4.0 96 5.0 97 2.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 779060.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.454484184143862 #Duplication Level Percentage of deduplicated Percentage of total 1 73.60434410685001 16.527475806315458 2 5.997946430636169 2.6936158652812394 3 2.6310384866337655 1.77235836257975 4 1.6795074558256136 1.5084989441595174 5 1.32487015498171 1.4874637970540516 6 1.0974510365058694 1.4785618165255998 7 0.898262573564728 1.4119015925922282 8 0.8316101955057289 1.4938702385884939 9 0.771040325687385 1.5581981518636066 >10 9.933412369024332 49.89076407148797 >50 1.1390153692864622 16.31740960561272 >100 0.08912483327750091 2.8280361346331495 >500 0.0 0.0 >1k 0.0023766622207333577 1.0318456133062592 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3152 0.4045901471003517 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1892 0.24285677611480505 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1414 0.18150078299489128 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1276 0.16378712807742665 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00924190691345981 0.0 2 0.0 0.0 0.0 0.032346674197109335 0.0 3 0.0 0.0 0.0 0.04415577747541909 0.0 4 0.0 0.0 0.0 0.06713218494082612 0.0 5 0.0 0.0 0.0 0.12065822914794752 0.0 6 0.0 0.0 0.0 0.20242343336841834 0.0 7 0.0 0.0 0.0 0.26493466485251455 0.0 8 0.0 0.0 0.0 0.6158704079275024 0.0 9 0.0 0.0 0.0 0.7768336200035941 0.0 10 0.0 0.0 0.0 1.0560162246810259 0.0 11 0.0 0.0 0.0 1.2221138294868175 0.0 12 0.0 0.0 0.0 1.415552075578261 0.0 13 0.0 0.0 0.0 1.4833260596102995 0.0 14 0.0 0.0 0.0 1.5037352707108567 0.0 15 0.0 0.0 0.0 1.5428850152748184 0.0 16 0.0 0.0 0.0 1.6335070469540216 0.0 17 0.0 0.0 0.0 1.7395322568223244 0.0 18 0.0 0.0 0.0 1.9256539932739456 0.0 19 0.0 0.0 0.0 1.9926578183965291 0.0 20 0.0 0.0 0.0 2.054527250789413 0.0 21 0.0 0.0 0.0 2.1419402870125537 0.0 22 0.0 0.0 0.0 2.2280697250532695 0.0 23 0.0 0.0 0.0 2.335121813467512 0.0 24 0.0 0.0 0.0 2.4129078633224657 0.0 25 0.0 0.0 0.0 2.4675891458937693 0.0 26 0.0 0.0 0.0 2.5281749801042284 0.0 27 0.0 0.0 0.0 2.591584730316022 0.0 28 0.0 0.0 0.0 2.650245167252843 0.0 29 0.0 0.0 0.0 2.7199445485585194 0.0 30 0.0 0.0 0.0 2.8146740944214823 0.0 31 0.0 0.0 0.0 2.902343850281108 0.0 32 0.0 0.0 0.0 2.984879213411034 0.0 33 0.0 0.0 0.0 3.0586861089004698 0.0 34 0.0 0.0 0.0 3.1422483505763354 0.0 35 0.0 0.0 0.0 3.2590557851770083 0.0 36 0.0 0.0 0.0 3.352630092675789 0.0 37 0.0 0.0 0.0 3.4467178394475395 0.0 38 0.0 0.0 0.0 3.5340025158524377 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGTA 20 7.854919E-4 44.0 30 TACCCGC 25 4.441516E-5 44.0 20 AAATCGT 30 2.5266636E-6 44.0 12 ACACGCA 20 7.854919E-4 44.0 44 CGTATGA 20 7.854919E-4 44.0 15 CGCGGAC 25 4.441516E-5 44.0 30 TTGTCTA 20 7.854919E-4 44.0 1 GCTATGC 25 4.441516E-5 44.0 43 TCGGGTA 40 8.307325E-9 44.0 27 CGTCTCA 20 7.854919E-4 44.0 20 CGATTTC 20 7.854919E-4 44.0 23 CGCTGAT 20 7.854919E-4 44.0 43 CCGCTAT 20 7.854919E-4 44.0 24 CCGTCAT 20 7.854919E-4 44.0 31 ATGTACG 30 2.5266636E-6 44.0 1 ACGATTA 35 1.445278E-7 44.0 1 AACGGCT 30 2.5266636E-6 44.0 39 CCGTAGA 20 7.854919E-4 44.0 3 CTAGTAA 55 1.8189894E-12 44.0 1 TGCGATG 20 7.854919E-4 44.0 1 >>END_MODULE