##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545718_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1614569 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.48907045781258 31.0 31.0 33.0 30.0 34.0 2 31.686123045840716 31.0 31.0 34.0 30.0 34.0 3 31.56008879149792 31.0 31.0 34.0 30.0 34.0 4 35.540637160753114 37.0 35.0 37.0 33.0 37.0 5 26.895489756089706 35.0 19.0 37.0 0.0 37.0 6 31.227077319086394 35.0 25.0 37.0 17.0 37.0 7 15.234928330718601 0.0 0.0 32.0 0.0 37.0 8 25.24228261536051 17.0 17.0 35.0 17.0 37.0 9 33.27848422705998 32.0 32.0 37.0 28.0 39.0 10 36.02730016493566 37.0 35.0 39.0 32.0 39.0 11 36.999417801283194 39.0 37.0 39.0 34.0 39.0 12 37.247527978054826 39.0 37.0 39.0 34.0 39.0 13 37.00235604672206 39.0 37.0 39.0 33.0 39.0 14 38.408838519753566 40.0 38.0 41.0 34.0 41.0 15 38.58656087166296 40.0 38.0 41.0 34.0 41.0 16 38.55434422437195 40.0 38.0 41.0 34.0 41.0 17 38.52321145767075 40.0 38.0 41.0 34.0 41.0 18 38.445755492642306 40.0 38.0 41.0 34.0 41.0 19 38.362530805434766 40.0 37.0 41.0 34.0 41.0 20 38.339532717400125 40.0 37.0 41.0 34.0 41.0 21 38.19448162326912 40.0 37.0 41.0 34.0 41.0 22 37.97359481075135 39.0 36.0 41.0 34.0 41.0 23 37.76234772251914 39.0 36.0 41.0 33.0 41.0 24 37.51536354284023 39.0 35.0 41.0 33.0 41.0 25 37.336038286378596 39.0 35.0 41.0 33.0 41.0 26 37.05195318379084 39.0 35.0 40.0 33.0 41.0 27 36.84417327472533 39.0 35.0 40.0 32.0 41.0 28 36.823061758277284 38.0 35.0 40.0 32.0 41.0 29 36.67200782375978 38.0 35.0 40.0 32.0 41.0 30 36.364507803630566 38.0 35.0 40.0 31.0 41.0 31 36.07202727167436 38.0 35.0 40.0 30.0 41.0 32 35.614815470877986 38.0 35.0 40.0 27.0 41.0 33 35.094709485937116 38.0 34.0 40.0 24.0 41.0 34 34.52186682637905 38.0 34.0 40.0 21.0 41.0 35 34.07027757872225 38.0 33.0 40.0 18.0 41.0 36 33.79939414171832 38.0 33.0 40.0 15.0 41.0 37 33.679353437356966 38.0 33.0 40.0 15.0 41.0 38 33.482440824765 38.0 33.0 40.0 15.0 41.0 39 33.35029967749907 38.0 33.0 40.0 13.0 41.0 40 33.12449762134663 37.0 33.0 40.0 12.0 41.0 41 32.86616799901398 37.0 32.0 40.0 10.0 40.0 42 32.848455532095564 37.0 32.0 40.0 10.0 40.0 43 32.70356423293151 37.0 32.0 40.0 10.0 40.0 44 32.4468040696929 37.0 31.0 40.0 10.0 40.0 45 32.291571310981446 36.0 31.0 39.0 10.0 40.0 46 32.206972263186024 36.0 31.0 39.0 10.0 40.0 47 32.05105449194181 36.0 31.0 39.0 10.0 40.0 48 31.91305419588757 36.0 31.0 39.0 10.0 40.0 49 31.76064695903365 35.0 31.0 39.0 10.0 40.0 50 31.883515043333546 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 0.0 12 2.0 13 7.0 14 17.0 15 45.0 16 128.0 17 335.0 18 897.0 19 2007.0 20 3606.0 21 6346.0 22 10492.0 23 17024.0 24 27081.0 25 40660.0 26 49883.0 27 48135.0 28 42182.0 29 38558.0 30 40970.0 31 49047.0 32 63192.0 33 97231.0 34 115221.0 35 153442.0 36 219715.0 37 384768.0 38 157995.0 39 45580.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.632695165087405 20.67053188807663 24.247337834431356 24.44943511240461 2 42.919813275245595 20.698898591512656 25.20449729927925 11.176790833962501 3 27.266967221592886 21.227212959000205 40.31379272115345 11.192027098253465 4 23.58809069169543 23.995382049327098 39.30225341871422 13.114273840263252 5 15.413091667187961 45.77469281275684 28.886718374996672 9.925497145058525 6 17.90521185530008 36.36580412481597 36.57180337291253 9.15718064697142 7 35.29059457972995 54.62869657475152 9.210383699922394 0.8703251455961313 8 77.67199791399439 2.3927128540186264 18.29862954138225 1.6366596906047373 9 73.37822044149243 4.227134300237401 19.654347383109673 2.740297875160492 10 33.664959503124365 28.974357862686574 25.816796928468218 11.543885705720845 11 26.9428559572245 22.500865556071002 35.770970457131284 14.785308029573219 12 25.84460620760091 20.16761129440736 38.636193312270954 15.351589185720771 13 21.8102168442476 23.49549632130928 38.07486703881965 16.619419795623475 14 17.929057228275784 25.986563596848445 38.62869905219288 17.455680122682896 15 17.291797377504462 22.671499328923076 42.71455725955347 17.32214603401899 16 19.88951850308039 20.34127993291089 41.48041985198527 18.288781712023454 17 19.665743613311047 20.922735417315703 38.36900126287573 21.042519706497522 18 20.930601293596 22.136495869795592 38.59952718031871 18.333375656289697 19 22.975171702169433 24.033348837987102 35.06595258548876 17.925526874354706 20 24.378642225881954 22.76632339652254 35.273562170461595 17.581472207133917 21 22.40294468678638 23.967510834160695 36.6829166173759 16.946627861677015 22 21.262330690109867 21.207517300282614 36.79440147804151 20.73575053156601 23 19.97895413574768 23.92657111588294 36.63516393539081 19.459310812978572 24 19.847835552398195 23.320465090064282 39.713756426637694 17.117942930899826 25 20.651455589696074 23.431949950729887 37.02752870890002 18.88906575067402 26 19.075617084187794 25.076599389682325 35.956345006004696 19.891438520125185 27 18.61245942415592 23.629278154108 37.69761465753399 20.060647764202088 28 18.46697168098731 23.92855306896144 39.111428498874936 18.49304675117632 29 19.367149994828342 23.00737843969505 38.22630064122376 19.39917092425285 30 20.385006772705285 23.37769398520596 38.16430267148694 18.072996570601813 31 22.829931703135635 23.677092772126805 35.10249484537359 18.390480679363964 32 23.131807931404605 23.86389184977539 34.49750366816159 18.50679655065841 33 22.77771962672391 24.57795238233857 33.23815829487622 19.4061696960613 34 20.196535422146717 25.594508503507747 34.450246474446125 19.758709599899415 35 21.30060715893839 25.794004468065474 32.67615072505418 20.229237647941957 36 22.9505830967893 27.57627577390622 30.03476469571756 19.43837643358692 37 21.222134204236546 29.093089239295438 29.997045651192362 19.68773090527565 38 21.730381296804286 28.416500007122643 30.120050614126743 19.733068081946328 39 21.433645759332677 28.055660674768312 29.030224165086782 21.48046940081223 40 22.257456943617772 26.102817532109192 31.364283595188564 20.27544192908448 41 20.54554497206375 26.00520634299308 30.896109116426736 22.55313956851643 42 20.997554146029067 27.692281965032155 29.01090012257141 22.29926376636737 43 20.978415911614803 26.9428559572245 29.797797430769453 22.28093070039125 44 21.96251755112355 26.799721783336604 30.32128078762815 20.91647987791169 45 20.73457374692565 28.00741250451359 29.671881474251023 21.586132274309737 46 21.682814422920295 27.5240017614608 30.453266475449485 20.339917340169418 47 20.563134805635435 27.51025196197871 31.015645661473744 20.910967570912113 48 20.659816954245994 26.73691864516165 31.250073549040025 21.353190851552334 49 21.245298280841514 26.16710713509302 31.489208575167737 21.09838600889773 50 20.13943039907245 26.40302148746817 32.148146037735145 21.309402075724236 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 865.0 1 1774.0 2 2683.0 3 33141.0 4 63599.0 5 45085.0 6 26571.0 7 25933.0 8 25295.0 9 25108.5 10 24922.0 11 24578.5 12 24235.0 13 23524.5 14 22814.0 15 21604.5 16 20395.0 17 19214.0 18 18033.0 19 17051.5 20 16070.0 21 15326.0 22 14582.0 23 14728.5 24 14875.0 25 16049.0 26 17223.0 27 19479.0 28 21735.0 29 25159.0 30 28583.0 31 32231.0 32 35879.0 33 40525.0 34 45171.0 35 48443.0 36 51715.0 37 55506.5 38 59298.0 39 65219.0 40 71140.0 41 77915.0 42 84690.0 43 89506.5 44 94323.0 45 99143.5 46 103964.0 47 107954.5 48 111945.0 49 107557.5 50 103170.0 51 95271.5 52 87373.0 53 81606.0 54 75839.0 55 73984.5 56 72130.0 57 69348.0 58 66566.0 59 61835.5 60 57105.0 61 51529.0 62 45953.0 63 39401.0 64 32849.0 65 27986.5 66 23124.0 67 20519.0 68 17914.0 69 15918.5 70 13923.0 71 11309.5 72 8696.0 73 6632.5 74 4569.0 75 3512.5 76 2456.0 77 1842.0 78 1228.0 79 951.5 80 675.0 81 468.5 82 262.0 83 165.0 84 68.0 85 48.0 86 28.0 87 25.5 88 23.0 89 15.0 90 7.0 91 6.0 92 5.0 93 2.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1614569.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.60766379501295 #Duplication Level Percentage of deduplicated Percentage of total 1 70.54579700970454 28.647000071213117 2 9.780703718264565 7.94343056539841 3 5.000220885847727 6.091418658999189 4 3.197777379376207 5.194170748520263 5 2.2919787388424213 4.6535951026115425 6 1.653588591305252 4.0289021742595645 7 1.3046614447274043 3.708547731966442 8 1.0108733131192054 3.2839362910796437 9 0.7903080984317228 2.888330900003226 >10 4.358545804374851 28.388345656005992 >50 0.04178046980962824 1.1412065328534302 >100 0.02290351827071215 1.828712261185357 >500 5.166167554569742E-4 0.12314437916166264 >1k 0.0 0.0 >5k 1.7220558515232474E-4 0.6267706248869859 >10k+ 1.7220558515232474E-4 1.452488301855136 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20771 1.2864733560473414 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8963 0.5551326700809938 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00532649889846764 0.0 2 0.0 0.0 0.0 0.02297826850385459 0.0 3 0.0 0.0 0.0 0.040382293974429086 0.0 4 0.0 0.0 0.0 0.05549468619798844 0.0 5 0.0 0.0 0.0 0.09884990979016692 0.0 6 0.0 0.0 0.0 0.22451812217378136 0.0 7 0.0 0.0 0.0 0.31853702133510553 0.0 8 0.0 0.0 0.0 0.7502931122795 0.0 9 0.0 0.0 0.0 1.0295626882468325 0.0 10 0.0 0.0 0.0 1.3835890568938212 0.0 11 0.0 0.0 0.0 1.5820940449122955 0.0 12 0.0 0.0 0.0 1.7683356982575535 0.0 13 0.0 0.0 0.0 1.8693533692273294 0.0 14 0.0 0.0 0.0 1.929369385885645 0.0 15 0.0 0.0 0.0 1.973529777915964 0.0 16 0.0 0.0 0.0 2.034784515248342 0.0 17 0.0 0.0 0.0 2.1053915936698897 0.0 18 0.0 0.0 0.0 2.2251139468180052 0.0 19 0.0 0.0 0.0 2.2805466969822907 0.0 20 0.0 0.0 0.0 2.3460750206401833 0.0 21 0.0 0.0 0.0 2.408382670545514 0.0 22 0.0 0.0 0.0 2.482829783056655 0.0 23 0.0 0.0 0.0 2.5652047078817937 0.0 24 0.0 0.0 0.0 2.6330866008204046 0.0 25 6.19360337031121E-5 0.0 0.0 2.6935981057483454 0.0 26 6.19360337031121E-5 0.0 0.0 2.7524373377663016 0.0 27 6.19360337031121E-5 0.0 0.0 2.8293618916255667 0.0 28 1.238720674062242E-4 0.0 0.0 2.898358633170834 0.0 29 1.238720674062242E-4 0.0 0.0 2.975221250996396 0.0 30 1.238720674062242E-4 0.0 0.0 3.0844144784149825 0.0 31 0.0011767846403591298 0.0 0.0 3.1614629043416542 0.0 32 0.0011767846403591298 0.0 0.0 3.2490404559978545 0.0 33 0.0011767846403591298 0.0 0.0 3.334264438373337 0.0 34 0.0011767846403591298 0.0 0.0 3.4297698023435355 0.0 35 0.0011767846403591298 0.0 0.0 3.521311260156735 0.0 36 0.0011767846403591298 0.0 0.0 3.6108707648914353 0.0 37 0.0011767846403591298 0.0 0.0 3.710587779153446 0.0 38 0.0011767846403591298 0.0 0.0 3.8280184990545463 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGATA 20 7.85743E-4 44.0 1 CGTTATG 20 7.85743E-4 44.0 1 CGTTTTA 12205 0.0 43.819748 1 CGTTATT 6925 0.0 43.33285 1 GTTATTT 7255 0.0 42.271538 2 GTTTTAT 13065 0.0 42.02985 2 CGTTTTT 5800 0.0 41.45862 1 CGACGGT 280 0.0 40.07143 28 CGCTAAG 50 1.3478711E-9 39.600002 2 AGGCGAT 1050 0.0 39.6 7 AGGATGC 1015 0.0 39.014782 7 AGGTACC 385 0.0 38.285713 7 CGGTCTA 300 0.0 38.13333 31 CGTAAAG 110 0.0 38.0 2 CGTTGAT 250 0.0 37.839996 25 TAACGGG 320 0.0 37.8125 3 ATAGGAT 880 0.0 37.75 5 ACGGGAT 560 0.0 37.714287 5 ATAACGG 105 0.0 37.714287 2 ATAGGCG 205 0.0 37.560974 5 >>END_MODULE